NO21G01560, NO21G01560 (gene) Nannochloropsis oceanica

Overview
NameNO21G01560
Unique NameNO21G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length591
Alignment locationchr21:463333..463923 +

Link to JBrowse

Properties
Property NameValue
DescriptionPhytanoyl-dioxygenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:463333..463923 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008775Phytyl_CoA_dOase
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO21G01560 vs. NCBI_GenBank
Match: EWM29048.1 (phytanoyl- dioxygenase [Nannochloropsis gaditana])

HSP 1 Score: 286.6 bits (732), Expect = 5.900e-74
Identity = 137/181 (75.69%), Postives = 155/181 (85.64%), Query Frame = 0
Query:   19 GNKELQL---MDDPEVWEDYRTRFETEGYLVLEGYWSRAKCAALRGRMNALIQGFDLAAHRSVFSTDDQSRISDDYFLGSGDKIRFFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLARAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVGF 197
            G+++L+L    +D ++WE YR RFE +GYLVLEGYWS+A C ALR RM+ L+ GFDLAAH SVFSTD+Q+R SD YFL SGDKI +FWE  A DK TGAFRQPRA SINK+GHALHDLDP FQ+VTYTPQIG+LARAVGGL VPLVAQSMYIF+QPRIG KVGAHQDGTFLYTEPQSVVGF
Sbjct:   10 GSEDLRLPGIEEDRDLWEAYRRRFEEDGYLVLEGYWSKATCTALRERMDHLVAGFDLAAHDSVFSTDEQNRTSDTYFLESGDKIHYFWEEGAIDKATGAFRQPRATSINKVGHALHDLDPLFQKVTYTPQIGQLARAVGGLHVPLVAQSMYIFKQPRIGGKVGAHQDGTFLYTEPQSVVGF 190          
BLAST of NO21G01560 vs. NCBI_GenBank
Match: CBN78369.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 193.4 bits (490), Expect = 6.900e-46
Identity = 92/164 (56.10%), Postives = 117/164 (71.34%), Query Frame = 0
Query:   33 EDYRTRFETEGYLVLEGYWSRAKCAALRGRMNALIQGFDLAAHRSVFSTDDQSRISDDYFLGSGDKIRFFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLARAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVGF 197
            E+ R  F  +GYLVL  +WS+ +C  +R R+  ++Q  DL   R++FSTD+     D YFLGSGDKIRFFWEA AFD + G F   R  SINKIGHALHDLDP  ++ +Y  ++G+++R + GLS PL  QSMYIF+QPRIG +V  HQDG FLYTEPQSVVG+
Sbjct:   18 EEQREHFNEKGYLVLPDWWSKQECEEIRERVQQVVQDMDLDEARTIFSTDESKHAEDAYFLGSGDKIRFFWEAGAFD-DKGEFVHDRLKSINKIGHALHDLDPVMKKYSYEKRVGQVSRDL-GLSTPLAVQSMYIFKQPRIGGEVTPHQDGAFLYTEPQSVVGY 179          
BLAST of NO21G01560 vs. NCBI_GenBank
Match: WP_053231552.1 (phytanoyl-CoA dioxygenase family protein [Sandaracinus amylolyticus] >AKF04184.1 Phytanoyl-CoA dioxygenase domain containing 1 [Sandaracinus amylolyticus])

HSP 1 Score: 182.2 bits (461), Expect = 1.600e-42
Identity = 90/162 (55.56%), Postives = 117/162 (72.22%), Query Frame = 0
Query:   34 DYRTRFETEGYLVLEGYWSRAKCAALRGRMNALIQGFDLAAHRSVFSTDDQSRISDDYFLGSGDKIRFFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLARAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVG 196
            D R R+  +G+LVLEG+   A+C ALR   + L+  FD  AHRSVF+T++Q+R SDD+FL S  +IRFF+E DAFD ETGA RQP+  SINKIGHALHDLDP     +  P+I  L   + GL+ PL+ QSMYIF+QP IG +V  HQD TFL+TEP++++G
Sbjct:    7 DARERYHRDGFLVLEGFVDPARCDALRAHADRLVAAFDPDAHRSVFTTNEQTRHSDDHFLDSAGEIRFFFEEDAFD-ETGALRQPKERSINKIGHALHDLDPEIDAFSRDPKIETLVAEL-GLAAPLLMQSMYIFKQPFIGGEVRCHQDSTFLHTEPEAMLG 166          
BLAST of NO21G01560 vs. NCBI_GenBank
Match: APR81959.1 (Phytanoyl-CoA dioxygenase domain containing 1 [Minicystis rosea])

HSP 1 Score: 176.8 bits (447), Expect = 6.600e-41
Identity = 92/169 (54.44%), Postives = 114/169 (67.46%), Query Frame = 0
Query:   29 PEVWEDYRTRFETEGYLVLEGYWSRAKCAALRGRMNALIQGFDLAAHRSVF-STDDQSRISDDYFLGSGDKIRFFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLARAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVGF 197
            P + E+ RTR++ +G+LVLEG+ S   C AL  R   L+  FD     S+F S D QSR +D YFLGSGD +RFF+EA AFD E G  RQ +A SINKIGHALHDLD  F   + TP +  +AR V G+  P + QSMYIF+QP IG +V  HQD T+LYT+P SVVGF
Sbjct:    9 PRITEEQRTRYDRDGFLVLEGFASPEACDALMARARELVAAFDPPDVASIFVSGDAQSRTTDAYFLGSGDTVRFFFEAGAFD-ERGQLRQDKALSINKIGHALHDLDATFASFSRTPALAAVARDV-GMRAPRLMQSMYIFKQPHIGGEVVCHQDATYLYTDPISVVGF 175          
BLAST of NO21G01560 vs. NCBI_GenBank
Match: WP_089287645.1 (MULTISPECIES: phytanoyl-CoA dioxygenase family protein [Azospirillum] >SNS29648.1 phytanoyl-CoA hydroxylase [Azospirillum sp. RU38E] >SNS48077.1 phytanoyl-CoA hydroxylase [Azospirillum sp. RU37A])

HSP 1 Score: 175.6 bits (444), Expect = 1.500e-40
Identity = 86/157 (54.78%), Postives = 110/157 (70.06%), Query Frame = 0
Query:   39 FETEGYLVLEGYWSRAKCAALRGRMNALIQGFDLAAHRSVFSTDDQSRISDDYFLGSGDKIRFFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLARAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVG 196
            +  +G+L+LEG+   A C AL  +   L+ GFD AAH SVFST +Q + SDDYFL SGD+IRFF+E +AFD   G  RQ ++ SINKIGHALHD DP F Q +  P++  +   + G++ PL+ QSMYIF+QP IG +V  HQD TFLYTEP SVVG
Sbjct:   12 YHRDGFLLLEGFADPADCRALMDQAGRLVAGFDAAAHASVFSTVNQQKTSDDYFLSSGDQIRFFFEEEAFD-AAGHLRQEKSLSINKIGHALHDRDPVFSQFSRDPRLASITADI-GMARPLLMQSMYIFKQPHIGGEVVCHQDSTFLYTEPMSVVG 166          
BLAST of NO21G01560 vs. NCBI_GenBank
Match: WP_094453107.1 (phytanoyl-CoA dioxygenase family protein [Niveispirillum lacus] >OYQ37255.1 phytanoyl-CoA dioxygenase [Niveispirillum lacus])

HSP 1 Score: 175.6 bits (444), Expect = 1.500e-40
Identity = 87/168 (51.79%), Postives = 114/168 (67.86%), Query Frame = 0
Query:   29 PEVWEDYRTRFETEGYLVLEGYWSRAKCAALRGRMNALIQGFDLAAHRSVFSTDDQSRISDDYFLGSGDKIRFFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLARAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVGF 197
            P +  D    +  +G+LVL G+ S A C AL  +   L+ GFD  AH SVFST +Q ++SDDYF+ SGD+IRFF+E +AFD + G  RQ +  SINK+GHALHD DP F + +   ++G +A  + G+  PL+ QSMYIF+QP IG +V  HQD TFLYTEP SVVGF
Sbjct:    2 PHLNRDQIDAYHRDGFLVLPGFASDAACDALMAQAGRLVDGFDADAHASVFSTVNQQKMSDDYFMSSGDQIRFFFEEEAFDAQ-GRLRQEKHLSINKLGHALHDRDPVFDRFSRDARLGVIASDI-GMEKPLLMQSMYIFKQPHIGGEVVCHQDSTFLYTEPMSVVGF 167          
BLAST of NO21G01560 vs. NCBI_GenBank
Match: WP_035708429.1 (phytanoyl-CoA dioxygenase family protein [Niveispirillum irakense])

HSP 1 Score: 173.3 bits (438), Expect = 7.300e-40
Identity = 83/162 (51.23%), Postives = 110/162 (67.90%), Query Frame = 0
Query:   34 DYRTRFETEGYLVLEGYWSRAKCAALRGRMNALIQGFDLAAHRSVFSTDDQSRISDDYFLGSGDKIRFFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLARAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVG 196
            + +  +  +G+L+LE + S   C  L  +   L++GFD  AH SVFST +Q + SDDYFL SGD IRFF+E +AFD ETG   Q +A SINKIGHA+HD DP F Q +  P++  +   + G++ PL+ QSMYIF+QP IG +V  HQD TFLYT+P SVVG
Sbjct:    8 EQKAAYHRDGFLLLENFASAPDCEGLMEQAGRLVEGFDADAHASVFSTTNQQKTSDDYFLSSGDHIRFFFEEEAFD-ETGRLHQEKALSINKIGHAMHDRDPVFSQFSRDPRLASITADI-GMAQPLLMQSMYIFKQPHIGGEVVCHQDSTFLYTDPMSVVG 167          
BLAST of NO21G01560 vs. NCBI_GenBank
Match: AKJ02956.1 (Phytanoyl-CoA dioxygenase domain containing 1 [Archangium gephyra])

HSP 1 Score: 172.2 bits (435), Expect = 1.600e-39
Identity = 86/158 (54.43%), Postives = 113/158 (71.52%), Query Frame = 0
Query:   39 FETEGYLVLEGYWSRAKCAALRGRMNALIQGFDLAAHRSVFSTDDQSRISDDYFLGSGDKIRFFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLARAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVGF 197
            FE +G+LVL G+   A C AL+ R   L+ GF      S+F+T+DQ+R SD+YFL SGD IRFF+E +AF +  G+ RQ +A SINKIGHALHDLDP F++ + TP++  LA  + GL+ PL+ QSMYIF+QP IG +V  HQD TFLYTEP + +GF
Sbjct:   11 FERQGFLVLPGFAPAAACDALKARAEQLVAGFQ-PETVSIFTTNDQTRTSDEYFLASGDDIRFFFEENAF-RPDGSLRQDKALSINKIGHALHDLDPLFERFSRTPELAGLASEL-GLTKPLLLQSMYIFKQPHIGGEVNCHQDATFLYTEPSTCLGF 165          
BLAST of NO21G01560 vs. NCBI_GenBank
Match: WP_047862199.1 (phytanoyl-CoA dioxygenase family protein [Archangium gephyra])

HSP 1 Score: 172.2 bits (435), Expect = 1.600e-39
Identity = 86/158 (54.43%), Postives = 113/158 (71.52%), Query Frame = 0
Query:   39 FETEGYLVLEGYWSRAKCAALRGRMNALIQGFDLAAHRSVFSTDDQSRISDDYFLGSGDKIRFFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLARAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVGF 197
            FE +G+LVL G+   A C AL+ R   L+ GF      S+F+T+DQ+R SD+YFL SGD IRFF+E +AF +  G+ RQ +A SINKIGHALHDLDP F++ + TP++  LA  + GL+ PL+ QSMYIF+QP IG +V  HQD TFLYTEP + +GF
Sbjct:    7 FERQGFLVLPGFAPAAACDALKARAEQLVAGFQ-PETVSIFTTNDQTRTSDEYFLASGDDIRFFFEENAF-RPDGSLRQDKALSINKIGHALHDLDPLFERFSRTPELAGLASEL-GLTKPLLLQSMYIFKQPHIGGEVNCHQDATFLYTEPSTCLGF 161          
BLAST of NO21G01560 vs. NCBI_GenBank
Match: WP_102113666.1 (phytanoyl-CoA dioxygenase family protein [Niveispirillum cyanobacteriorum] >AUN32116.1 phytanoyl-CoA dioxygenase [Niveispirillum cyanobacteriorum])

HSP 1 Score: 172.2 bits (435), Expect = 1.600e-39
Identity = 86/168 (51.19%), Postives = 113/168 (67.26%), Query Frame = 0
Query:   29 PEVWEDYRTRFETEGYLVLEGYWSRAKCAALRGRMNALIQGFDLAAHRSVFSTDDQSRISDDYFLGSGDKIRFFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLARAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVGF 197
            P + +D    +  +G+LVL G+ S A C AL  +   L+ GFD  AH SVFST +Q + SDDYF+ SG++IRFF+E +AFD   G  RQ +  SINKIGHA+HD DP F   +   ++G +A  + G++ PL+ QSMYIF+QP IG +V  HQD TFLYTEP SVVGF
Sbjct:    2 PYLTQDQIDAYHRDGFLVLPGFASDAACDALMAQAGRLVDGFDADAHASVFSTVNQQKTSDDYFMSSGNQIRFFFEEEAFD-TAGRLRQEKHLSINKIGHAMHDRDPVFDGFSRDARLGAIAGDI-GMAKPLLMQSMYIFKQPHIGGEVVCHQDSTFLYTEPMSVVGF 167          
The following BLAST results are available for this feature:
BLAST of NO21G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29048.15.900e-7475.69phytanoyl- dioxygenase [Nannochloropsis gaditana][more]
CBN78369.16.900e-4656.10conserved unknown protein [Ectocarpus siliculosus][more]
WP_053231552.11.600e-4255.56phytanoyl-CoA dioxygenase family protein [Sandarac... [more]
APR81959.16.600e-4154.44Phytanoyl-CoA dioxygenase domain containing 1 [Min... [more]
WP_089287645.11.500e-4054.78MULTISPECIES: phytanoyl-CoA dioxygenase family pro... [more]
WP_094453107.11.500e-4051.79phytanoyl-CoA dioxygenase family protein [Niveispi... [more]
WP_035708429.17.300e-4051.23phytanoyl-CoA dioxygenase family protein [Niveispi... [more]
AKJ02956.11.600e-3954.43Phytanoyl-CoA dioxygenase domain containing 1 [Arc... [more]
WP_047862199.11.600e-3954.43phytanoyl-CoA dioxygenase family protein [Archangi... [more]
WP_102113666.11.600e-3951.19phytanoyl-CoA dioxygenase family protein [Niveispi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL025nonsL025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR060ngnoR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01560.1NO21G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01560.1NO21G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01560 ID=NO21G01560|Name=NO21G01560|organism=Nannochloropsis oceanica|type=gene|length=591bp
ATGACGACCACCAGCACTAACGCCATCGCACAACGAATACTTGCGCTCGA
CAATGGCAACAAGGAGCTCCAACTCATGGATGACCCCGAGGTGTGGGAGG
ACTATCGCACGCGCTTCGAGACGGAGGGATACCTCGTCCTGGAAGGATAC
TGGTCCCGGGCAAAGTGCGCAGCACTCCGTGGCCGAATGAACGCCTTGAT
TCAAGGGTTTGACCTGGCCGCACACCGCTCCGTCTTCTCCACGGACGATC
AAAGCCGCATTTCCGACGATTACTTCCTCGGGAGTGGCGACAAGATTCGT
TTCTTCTGGGAGGCAGATGCCTTTGACAAGGAGACGGGTGCATTCCGACA
ACCCCGGGCCGCCAGCATCAATAAAATTGGACATGCATTGCATGATCTTG
ACCCAAATTTCCAGCAAGTAACCTACACTCCTCAAATCGGCAAGTTGGCT
CGAGCTGTGGGGGGCCTGAGCGTCCCCTTGGTCGCCCAAAGCATGTATAT
TTTCGAGCAGCCGAGGATAGGGAGGAAGGTGGGGGCGCACCAAGACGGCA
CCTTTTTGTACACGGAGCCTCAGTCCGTGGTGGGGTTTTGA
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protein sequence of NO21G01560.1

>NO21G01560.1-protein ID=NO21G01560.1-protein|Name=NO21G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MTTTSTNAIAQRILALDNGNKELQLMDDPEVWEDYRTRFETEGYLVLEGY
WSRAKCAALRGRMNALIQGFDLAAHRSVFSTDDQSRISDDYFLGSGDKIR
FFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLA
RAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVGF*
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Synonyms
Publications