NO21G01560.1, NO21G01560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01560.1
Unique NameNO21G01560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length591
Alignment locationchr21:463333..463923 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:463333..463923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G01560.1 vs.
Match: EWM29048.1 (phytanoyl- dioxygenase [Nannochloropsis gaditana])

HSP 1 Score: 286.6 bits (732), Expect = 5.900e-74
Identity = 137/181 (75.69%), Postives = 155/181 (85.64%), Query Frame = 0 
Query:   19 GNKELQLM---DDPEVWEDYRTRFETEGYLVLEGYWSRAKCAALRGRMNALIQGFDLAAHRSVFSTDDQSRISDDYFLGSGDKIRFFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLARAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVGF 197
            G+++L+L    +D ++WE YR RFE +GYLVLEGYWS+A C ALR RM+ L+ GFDLAAH SVFSTD+Q+R SD YFL SGDKI +FWE  A DK TGAFRQPRA SINK+GHALHDLDP FQ+VTYTPQIG+LARAVGGL VPLVAQSMYIF+QPRIG KVGAHQDGTFLYTEPQSVVGF
Sbjct:   10 GSEDLRLPGIEEDRDLWEAYRRRFEEDGYLVLEGYWSKATCTALRERMDHLVAGFDLAAHDSVFSTDEQNRTSDTYFLESGDKIHYFWEEGAIDKATGAFRQPRATSINKVGHALHDLDPLFQKVTYTPQIGQLARAVGGLHVPLVAQSMYIFKQPRIGGKVGAHQDGTFLYTEPQSVVGF 190
The following BLAST results are available for this feature:
BLAST of NO21G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29048.15.900e-7475.69phytanoyl- dioxygenase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01560NO21G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01560.1NO21G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01560.1.cds1NO21G01560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01560.1 ID=NO21G01560.1|Name=NO21G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=591bp
ATGACGACCACCAGCACTAACGCCATCGCACAACGAATACTTGCGCTCGA
CAATGGCAACAAGGAGCTCCAACTCATGGATGACCCCGAGGTGTGGGAGG
ACTATCGCACGCGCTTCGAGACGGAGGGATACCTCGTCCTGGAAGGATAC
TGGTCCCGGGCAAAGTGCGCAGCACTCCGTGGCCGAATGAACGCCTTGAT
TCAAGGGTTTGACCTGGCCGCACACCGCTCCGTCTTCTCCACGGACGATC
AAAGCCGCATTTCCGACGATTACTTCCTCGGGAGTGGCGACAAGATTCGT
TTCTTCTGGGAGGCAGATGCCTTTGACAAGGAGACGGGTGCATTCCGACA
ACCCCGGGCCGCCAGCATCAATAAAATTGGACATGCATTGCATGATCTTG
ACCCAAATTTCCAGCAAGTAACCTACACTCCTCAAATCGGCAAGTTGGCT
CGAGCTGTGGGGGGCCTGAGCGTCCCCTTGGTCGCCCAAAGCATGTATAT
TTTCGAGCAGCCGAGGATAGGGAGGAAGGTGGGGGCGCACCAAGACGGCA
CCTTTTTGTACACGGAGCCTCAGTCCGTGGTGGGGTTTTGA
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protein sequence of NO21G01560.1

>NO21G01560.1-protein ID=NO21G01560.1-protein|Name=NO21G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MTTTSTNAIAQRILALDNGNKELQLMDDPEVWEDYRTRFETEGYLVLEGY
WSRAKCAALRGRMNALIQGFDLAAHRSVFSTDDQSRISDDYFLGSGDKIR
FFWEADAFDKETGAFRQPRAASINKIGHALHDLDPNFQQVTYTPQIGKLA
RAVGGLSVPLVAQSMYIFEQPRIGRKVGAHQDGTFLYTEPQSVVGF*
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mRNA from alignment at chr21:463333..463923+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01560.1 ID=NO21G01560.1|Name=NO21G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=591bp|location=Sequence derived from alignment at chr21:463333..463923+ (Nannochloropsis oceanica)
ATGACGACCACCAGCACTAACGCCATCGCACAACGAATACTTGCGCTCGA
CAATGGCAACAAGGAGCTCCAACTCATGGATGACCCCGAGGTGTGGGAGG
ACTATCGCACGCGCTTCGAGACGGAGGGATACCTCGTCCTGGAAGGATAC
TGGTCCCGGGCAAAGTGCGCAGCACTCCGTGGCCGAATGAACGCCTTGAT
TCAAGGGTTTGACCTGGCCGCACACCGCTCCGTCTTCTCCACGGACGATC
AAAGCCGCATTTCCGACGATTACTTCCTCGGGAGTGGCGACAAGATTCGT
TTCTTCTGGGAGGCAGATGCCTTTGACAAGGAGACGGGTGCATTCCGACA
ACCCCGGGCCGCCAGCATCAATAAAATTGGACATGCATTGCATGATCTTG
ACCCAAATTTCCAGCAAGTAACCTACACTCCTCAAATCGGCAAGTTGGCT
CGAGCTGTGGGGGGCCTGAGCGTCCCCTTGGTCGCCCAAAGCATGTATAT
TTTCGAGCAGCCGAGGATAGGGAGGAAGGTGGGGGCGCACCAAGACGGCA
CCTTTTTGTACACGGAGCCTCAGTCCGTGGTGGGGTTTTGA
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Coding sequence (CDS) from alignment at chr21:463333..463923+

>NO21G01560.1 ID=NO21G01560.1|Name=NO21G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at chr21:463333..463923+ (Nannochloropsis oceanica)
ATGACGACCACCAGCACTAACGCCATCGCACAACGAATACTTGCGCTCGA
CAATGGCAACAAGGAGCTCCAACTCATGGATGACCCCGAGGTGTGGGAGG
ACTATCGCACGCGCTTCGAGACGGAGGGATACCTCGTCCTGGAAGGATAC
TGGTCCCGGGCAAAGTGCGCAGCACTCCGTGGCCGAATGAACGCCTTGAT
TCAAGGGTTTGACCTGGCCGCACACCGCTCCGTCTTCTCCACGGACGATC
AAAGCCGCATTTCCGACGATTACTTCCTCGGGAGTGGCGACAAGATTCGT
TTCTTCTGGGAGGCAGATGCCTTTGACAAGGAGACGGGTGCATTCCGACA
ACCCCGGGCCGCCAGCATCAATAAAATTGGACATGCATTGCATGATCTTG
ACCCAAATTTCCAGCAAGTAACCTACACTCCTCAAATCGGCAAGTTGGCT
CGAGCTGTGGGGGGCCTGAGCGTCCCCTTGGTCGCCCAAAGCATGTATAT
TTTCGAGCAGCCGAGGATAGGGAGGAAGGTGGGGGCGCACCAAGACGGCA
CCTTTTTGTACACGGAGCCTCAGTCCGTGGTGGGGTTTTGA
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Synonyms
Publications