NO21G01460, NO21G01460 (gene) Nannochloropsis oceanica

Overview
NameNO21G01460
Unique NameNO21G01460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2233
Alignment locationchr21:440506..442738 +

Link to JBrowse

Properties
Property NameValue
DescriptionWD40/YVTN repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:440506..442738 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
Homology
BLAST of NO21G01460 vs. NCBI_GenBank
Match: EWM22677.1 (WD40/YVTN repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 300.4 bits (768), Expect = 1.400e-77
Identity = 231/558 (41.40%), Postives = 287/558 (51.43%), Query Frame = 0
Query:  127 QSLIRGFQYDEARGRYFPTSSPFFSSSSSSEPFRPPKNLRGASSLSTLPASASAFSSLSTSSFSKGAPFVCVNFTRRLREREWRHGQQQLHMGSLHRLLHLSTS-TDLGQEGTLEDIDVAGGGVVTGARNGMLHVSALPLSSDEFPRRWPILSFHSSVVRVRW----RVGRQGELPCLLAVATMGTAAGK----AAVTVCKLQGESSEEGIGXXXXXXXXXXXXXXXXWMGSERLIREDRFPLDARDVWGVEWEPGQGRRLLPCLSHGPLLVVDVEARRQLRHSFRLPSDCFAACWSTGGEXXXXXXXXXXXXXEEGVFLGLRNGQVRFVDLRAPTGIAQPLTTMGSVVDQIEMLPNGRGLLVSDRLGALRLLDLRLVSSLPGAGAAGAAGGLASTRTTTAYLRDFPAPRMSNTPASTGFVLDRVDGSLVLTLTTRGQLRTYDLNAPQREEEWKDGRRTHVCVADMLPLLSSGFVNDAALTIPATTGAAAPPRFFLARRW-AGEGWDVSGRGREESGSLIGNGIVDVWPSKLVCGDRTSGRIRQLRLQRE--SCGREK 673
            Q +IRG+ +DE  GRYF         S  S   R P            P   S      T   S+G P    N  RRLR RE + G ++ HMG L  LL LS +   LGQ+ TLED+DV  G V TGARNG L +S L    + F  +  ILS  SS+ RVRW    R G+   LP LLAVA  G +AG     AAVTVC L+GES +                     +     +   RF L +RD+WGVEW+   GRRLLP LS GPL+V+D+EARRQLRH F L SDCFA+ WS GG              +  VFLGLRNGQV+ VDLR+    ++PLT MG +VDQ+E+L + R L VSDRLGA+RLLDLR  +S           GL               P  S+ PASTGFVLD  DG+L +T+T  G L +YDL A +  E+   G R H+                 +LT  A +   APPR FL+RRW    G+       +E   +  N   D     LV GDRTSG++ +LRLQRE   C RE+
Sbjct:  124 QPVIRGYYFDEGCGRYFRLEQSSLRGSLPSRQARIP------------PEKPS--PPPRTPQLSRGPP---QNIYRRLRLREGQRG-RRFHMGDLGGLLRLSAAGAVLGQDSTLEDVDVMRGWVATGARNGTLCLSHLS-QGEHF--QTGILSLASSITRVRWRDDRRWGQSHALPGLLAVAETGASAGSGGGAAAVTVCALRGESYDGST------------------LEECTALASTRFLLGSRDLWGVEWDHVAGRRLLPGLSPGPLVVLDLEARRQLRHPFSLASDCFASHWSPGG------------AEDRPVFLGLRNGQVQRVDLRSGATSSRPLTRMGCLVDQLELLHDERRLAVSDRLGAIRLLDLRFATS----------RGLCD------------IPPTSSRPASTGFVLDPHDGTLCMTMTPDGSLLSYDLKASEPGEQ---GGRAHLL---------------GSLTAHAPSSHPAPPRHFLSRRWECSVGF--GALPAQEIPGVFDNQDKDALLPILVSGDRTSGKLMRLRLQREDGDCPRER 588          
The following BLAST results are available for this feature:
BLAST of NO21G01460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22677.11.400e-7741.40WD40/YVTN repeat containing protein [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL025nonsL025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR060ngnoR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004622NSK004622Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01460.1NO21G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|201634gene_8105Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g25gene7781Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01460.1NO21G01460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01460 ID=NO21G01460|Name=NO21G01460|organism=Nannochloropsis oceanica|type=gene|length=2233bp
ATGAAAAGCGGAGATTGTAGCACGAGGGGAGGTCGGCGAGATGGAGGGCG
AGGCGGCAGGGGCAGTGGGCGTGTAGACTCCTCACGCGAGCAAAAGCACA
AAGACTCGGCCGCGGCACCAGGCAATGGGCGGCGGAGGCGCAGCAGAGGC
ATCGATCCTGGTGCATTTGAGCTGCAGCTGGAGGAGCAGCGGCAGAGACA
ACAGCAGCGACGAGAGGGAGGAAATGGAGGCGGAGAACGAGGAGAAGATA
ACGGAGGAGGAAGTGCAATCGGGGAACAGCGCACAAGCTCTGTTAAATCA
GGCCCGCATAACACTACACCACCGTCAATCTCCGCTCCCTCATCCTCCGA
CCAGCAGCGATCGGAGCAGCGTCGCCCTCAGTCATTAATTCGAGgtacgg
cttgtacaaaaaaagggtcactgcgcggctccgcaaatcgtatagctttt
ctttgagccacacgttctggagaagtgggcgtatacttattaccatcttt
tcaaaatgaaacacatttctgcgtgctttggcgctcctcttcgtctcttt
ttcaaggtactcattctttccgtcattccttcctatttgcgccatttccc
agGCTTCCAATACGACGAGGCCCGCGGCCGGTACTTTCCTACCTCTTCCC
CCTTCTTCTCCTCTTCTTCTTCTTCAGAGCCCTTTCGGCCTCCCAAAAAT
CTTCGTGGCGCCTCTTCCTTATCGACGCTACCAGCATCCGCCTCCGCCTT
CTCCTCATTATCCACCTCCTCCTTTTCGAAAGGAGCGCCATTTGTCTGTG
TAAACTTCACCCGCCGCCTGCGCGAACGAGAATGGCGACACGGACAACAG
CAGCTTCACATGGGATCACTTCACAGGCTCCTTCACCTGAGCACCTCCAC
AGATCTAGGCCAGGAAGGCACATTGGAGGACATCGATGTGGCGGGGGGTG
GAGTAGTAACAGGAGCTCGCAACGGCATGCTACACGTGAGCGCCCTTCCC
CTATCATCCGACGAATTCCCTCGGCGCTGGCCTATTTTGAGCTTTCACTC
TTCAGTGGTACGCGTTCGTTGGCGGGTCGGCAGGCAGGGAGAGCTGCCGT
GTCTCCTGGCGGTTGCGACGATGGGAACGGCGGCGGGAAAGGCGGCTGTA
ACGGTGTGCAAGCTCCAGGGGGAAAGTAGTGAAGAAGGAATCGGGCATGG
AGAAGGAGGAGGAAGCGATGGAGGACAGGGAGGAAGAAGAGGATGGATGG
GAAGCGAAAGGCTAATTCGAGAGGATCGATTTCCGTTGGATGCTCGGGAT
GTGTGGGGGGTGGAGTGGGAGCCGGGGCAAGGGCGGCGCCTCCTTCCCTG
CCTCTCCCATGGGCCTTTGCTCGTGGTGGACGTTGAGGCGCGTCGGCAAT
TACGGCATTCTTTTCGGTTGCCGAGCGATTGTTTTGCAGCATGTTGGAGC
ACTGGTGGCGAAAGCAGCAATGGCAGCAGCAACAGTAGCAGCAGTGAGGC
AGAGGAGGGTGTGTTTTTGGGGCTGAGGAATGGACAGGTGCGGTTCGTGG
ACTTGAGGGCACCGACAGGGATAGCTCAGCCCTTGACGACAATGGGTTCT
GTTGTCGACCAGATTGAGATGCTACCGAATGGGAGGGGCTTGTTAGTGAG
TGATCGTTTGGGTGCCCTGCGTTTGCTCGACCTGCGTCTTGTGTCCTCCC
TACCTGGTGCTGGTGCTGCTGGTGCTGCTGGTGGCTTGGCTTCGACGAGG
ACAACGACCGCCTACCTACGTGACTTCCCCGCTCCCCGCATGTCCAATAC
TCCTGCGAGCACTGGCTTCGTCCTCGACCGCGTAGATGGCTCCCTCGTTC
TCACCCTCACCACCCGAGGGCAGCTTCGCACCTATGACTTGAATGCACCG
CAAAGGGAAGAGGAGTGGAAAGATGGGAGGCGGACCCATGTGTGTGTCGC
CGACATGCTTCCGCTTCTCTCTTCGGGATTTGTGAATGATGCCGCACTTA
CTATACCTGCTACCACTGGTGCTGCTGCGCCGCCGCGCTTCTTTTTGGCT
CGTCGTTGGGCAGGAGAGGGGTGGGATGTTTCGGGGAGAGGGCGGGAGGA
ATCGGGCAGTCTTATCGGGAATGGGATTGTCGACGTGTGGCCGTCGAAGC
TGGTATGTGGGGATAGGACGTCAGGGCGCATACGGCAGTTGCGGCTGCAG
AGGGAGAGTTGCGGCCGTGAGAAGGAAGGATAG
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protein sequence of NO21G01460.1

>NO21G01460.1-protein ID=NO21G01460.1-protein|Name=NO21G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=675bp
MKSGDCSTRGGRRDGGRGGRGSGRVDSSREQKHKDSAAAPGNGRRRRSRG
IDPGAFELQLEEQRQRQQQRREGGNGGGERGEDNGGGSAIGEQRTSSVKS
GPHNTTPPSISAPSSSDQQRSEQRRPQSLIRGFQYDEARGRYFPTSSPFF
SSSSSSEPFRPPKNLRGASSLSTLPASASAFSSLSTSSFSKGAPFVCVNF
TRRLREREWRHGQQQLHMGSLHRLLHLSTSTDLGQEGTLEDIDVAGGGVV
TGARNGMLHVSALPLSSDEFPRRWPILSFHSSVVRVRWRVGRQGELPCLL
AVATMGTAAGKAAVTVCKLQGESSEEGIGHGEGGGSDGGQGGRRGWMGSE
RLIREDRFPLDARDVWGVEWEPGQGRRLLPCLSHGPLLVVDVEARRQLRH
SFRLPSDCFAACWSTGGESSNGSSNSSSSEAEEGVFLGLRNGQVRFVDLR
APTGIAQPLTTMGSVVDQIEMLPNGRGLLVSDRLGALRLLDLRLVSSLPG
AGAAGAAGGLASTRTTTAYLRDFPAPRMSNTPASTGFVLDRVDGSLVLTL
TTRGQLRTYDLNAPQREEEWKDGRRTHVCVADMLPLLSSGFVNDAALTIP
ATTGAAAPPRFFLARRWAGEGWDVSGRGREESGSLIGNGIVDVWPSKLVC
GDRTSGRIRQLRLQRESCGREKEG*
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Synonyms
Publications