NO21G01460.1, NO21G01460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01460.1
Unique NameNO21G01460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2025
Alignment locationchr21:440506..442738 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:440506..442738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01460.1 vs.
Match: EWM22677.1 (WD40/YVTN repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 323.6 bits (828), Expect = 1.500e-84
Identity = 272/658 (41.34%), Postives = 341/658 (51.82%), Query Frame = 0 
Query:   34 KDSAAAPGNGRRRRSRGIDPGAFELQLEEQRQRQQQRREGGNGGGERGEDNGGGSAIGEQRTSS----VKSGPHNT---TPPSISAPSSSDQQRSEQRRPQSLIRGFQYDEARGRYFPTSSPFFSSSSSSEPFRPPKNLRGASSLSTLPASASAFSSLSTSSFSKGAPFVCVNFTRRLREREWRHGQQQLHMGSLHRLLHLSTS-TDLGQEGTLEDIDVAGGGVVTGARNGMLHVSALPLSSDEFPRRWPILSFHSSVVRVRWRV----GRQGELPCLLAVATMGTAAGK----AAVTVCKLQGESSEEGIGHGEGGGSDGGQGGRRGWMGSERLIREDRFPLDARDVWGVEWEPGQGRRLLPCLSHGPLLVVDVEARRQLRHSFRLPSDCFAACWSTGGESSNGSSNSSSSEAEEGVFLGLRNGQVRFVDLRAPTGIAQPLTTMGSVVDQIEMLPNGRGLLVSDRLGALRLLDLRLVSSLPGAGAAGAAGGLASTRTTTAYLRDFPAPRMSNTPASTGFVLDRVDGSLVLTLTTRGQLRTYDLNAPQREEEWKDGRRTHVCVADMLPLLSSGFVNDAALTIPATTGAAAPPRFFLARRW-AGEGWDVSGRGREESGSLIGNGIVDVWPSKLVCGDRTSGRIRQLRLQRE--SCGREK 673
            +D  AA G  RRRR R +DP AFE QLEEQR+RQQ     G GGG + +   G   I E   +S    + +GP ++    PPS  A S +  +   +R  Q +IRG+ +DE  GRYF         S  S   R P            P   S      T   S+G P    N  RRLR RE + G++  HMG L  LL LS +   LGQ+ TLED+DV  G V TGARNG L +S L    + F  +  ILS  SS+ RVRWR     G+   LP LLAVA  G +AG     AAVTVC L+GES +         GS          +     +   RF L +RD+WGVEW+   GRRLLP LS GPL+V+D+EARRQLRH F L SDCFA+ WS GG              +  VFLGLRNGQV+ VDLR+    ++PLT MG +VDQ+E+L + R L VSDRLGA+RLLDLR  +S           GL               P  S+ PASTGFVLD  DG+L +T+T  G L +YDL A +  E+   G R H+                 +LT  A +   APPR FL+RRW    G+       +E   +  N   D     LV GDRTSG++ +LRLQRE   C RE+
Sbjct:   28 QDGMAARGR-RRRRGRRVDPHAFERQLEEQRRRQQA---AGEGGGVKTKGGDGEEKIEEPVVNSEEAGMDAGPASSPCAAPPSSLAISDNGYRPGLRRGRQPVIRGYYFDEGCGRYFRLEQSSLRGSLPSRQARIP------------PEKPSP--PPRTPQLSRGPP---QNIYRRLRLREGQRGRR-FHMGDLGGLLRLSAAGAVLGQDSTLEDVDVMRGWVATGARNGTLCLSHLS-QGEHF--QTGILSLASSITRVRWRDDRRWGQSHALPGLLAVAETGASAGSGGGAAAVTVCALRGESYD---------GST---------LEECTALASTRFLLGSRDLWGVEWDHVAGRRLLPGLSPGPLVVLDLEARRQLRHPFSLASDCFASHWSPGGAE------------DRPVFLGLRNGQVQRVDLRSGATSSRPLTRMGCLVDQLELLHDERRLAVSDRLGAIRLLDLRFATS----------RGLCD------------IPPTSSRPASTGFVLDPHDGTLCMTMTPDGSLLSYDLKASEPGEQ---GGRAHLL---------------GSLTAHAPSSHPAPPRHFLSRRWECSVGF--GALPAQEIPGVFDNQDKDALLPILVSGDRTSGKLMRLRLQREDGDCPRER 588
The following BLAST results are available for this feature:
BLAST of NO21G01460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22677.11.500e-8441.34WD40/YVTN repeat containing protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01460NO21G01460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01460.1NO21G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01460.1.cds1NO21G01460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01460.1.cds2NO21G01460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01460.1 ID=NO21G01460.1|Name=NO21G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2025bp
ATGAAAAGCGGAGATTGTAGCACGAGGGGAGGTCGGCGAGATGGAGGGCG
AGGCGGCAGGGGCAGTGGGCGTGTAGACTCCTCACGCGAGCAAAAGCACA
AAGACTCGGCCGCGGCACCAGGCAATGGGCGGCGGAGGCGCAGCAGAGGC
ATCGATCCTGGTGCATTTGAGCTGCAGCTGGAGGAGCAGCGGCAGAGACA
ACAGCAGCGACGAGAGGGAGGAAATGGAGGCGGAGAACGAGGAGAAGATA
ACGGAGGAGGAAGTGCAATCGGGGAACAGCGCACAAGCTCTGTTAAATCA
GGCCCGCATAACACTACACCACCGTCAATCTCCGCTCCCTCATCCTCCGA
CCAGCAGCGATCGGAGCAGCGTCGCCCTCAGTCATTAATTCGAGGCTTCC
AATACGACGAGGCCCGCGGCCGGTACTTTCCTACCTCTTCCCCCTTCTTC
TCCTCTTCTTCTTCTTCAGAGCCCTTTCGGCCTCCCAAAAATCTTCGTGG
CGCCTCTTCCTTATCGACGCTACCAGCATCCGCCTCCGCCTTCTCCTCAT
TATCCACCTCCTCCTTTTCGAAAGGAGCGCCATTTGTCTGTGTAAACTTC
ACCCGCCGCCTGCGCGAACGAGAATGGCGACACGGACAACAGCAGCTTCA
CATGGGATCACTTCACAGGCTCCTTCACCTGAGCACCTCCACAGATCTAG
GCCAGGAAGGCACATTGGAGGACATCGATGTGGCGGGGGGTGGAGTAGTA
ACAGGAGCTCGCAACGGCATGCTACACGTGAGCGCCCTTCCCCTATCATC
CGACGAATTCCCTCGGCGCTGGCCTATTTTGAGCTTTCACTCTTCAGTGG
TACGCGTTCGTTGGCGGGTCGGCAGGCAGGGAGAGCTGCCGTGTCTCCTG
GCGGTTGCGACGATGGGAACGGCGGCGGGAAAGGCGGCTGTAACGGTGTG
CAAGCTCCAGGGGGAAAGTAGTGAAGAAGGAATCGGGCATGGAGAAGGAG
GAGGAAGCGATGGAGGACAGGGAGGAAGAAGAGGATGGATGGGAAGCGAA
AGGCTAATTCGAGAGGATCGATTTCCGTTGGATGCTCGGGATGTGTGGGG
GGTGGAGTGGGAGCCGGGGCAAGGGCGGCGCCTCCTTCCCTGCCTCTCCC
ATGGGCCTTTGCTCGTGGTGGACGTTGAGGCGCGTCGGCAATTACGGCAT
TCTTTTCGGTTGCCGAGCGATTGTTTTGCAGCATGTTGGAGCACTGGTGG
CGAAAGCAGCAATGGCAGCAGCAACAGTAGCAGCAGTGAGGCAGAGGAGG
GTGTGTTTTTGGGGCTGAGGAATGGACAGGTGCGGTTCGTGGACTTGAGG
GCACCGACAGGGATAGCTCAGCCCTTGACGACAATGGGTTCTGTTGTCGA
CCAGATTGAGATGCTACCGAATGGGAGGGGCTTGTTAGTGAGTGATCGTT
TGGGTGCCCTGCGTTTGCTCGACCTGCGTCTTGTGTCCTCCCTACCTGGT
GCTGGTGCTGCTGGTGCTGCTGGTGGCTTGGCTTCGACGAGGACAACGAC
CGCCTACCTACGTGACTTCCCCGCTCCCCGCATGTCCAATACTCCTGCGA
GCACTGGCTTCGTCCTCGACCGCGTAGATGGCTCCCTCGTTCTCACCCTC
ACCACCCGAGGGCAGCTTCGCACCTATGACTTGAATGCACCGCAAAGGGA
AGAGGAGTGGAAAGATGGGAGGCGGACCCATGTGTGTGTCGCCGACATGC
TTCCGCTTCTCTCTTCGGGATTTGTGAATGATGCCGCACTTACTATACCT
GCTACCACTGGTGCTGCTGCGCCGCCGCGCTTCTTTTTGGCTCGTCGTTG
GGCAGGAGAGGGGTGGGATGTTTCGGGGAGAGGGCGGGAGGAATCGGGCA
GTCTTATCGGGAATGGGATTGTCGACGTGTGGCCGTCGAAGCTGGTATGT
GGGGATAGGACGTCAGGGCGCATACGGCAGTTGCGGCTGCAGAGGGAGAG
TTGCGGCCGTGAGAAGGAAGGATAG
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protein sequence of NO21G01460.1

>NO21G01460.1-protein ID=NO21G01460.1-protein|Name=NO21G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=675bp
MKSGDCSTRGGRRDGGRGGRGSGRVDSSREQKHKDSAAAPGNGRRRRSRG
IDPGAFELQLEEQRQRQQQRREGGNGGGERGEDNGGGSAIGEQRTSSVKS
GPHNTTPPSISAPSSSDQQRSEQRRPQSLIRGFQYDEARGRYFPTSSPFF
SSSSSSEPFRPPKNLRGASSLSTLPASASAFSSLSTSSFSKGAPFVCVNF
TRRLREREWRHGQQQLHMGSLHRLLHLSTSTDLGQEGTLEDIDVAGGGVV
TGARNGMLHVSALPLSSDEFPRRWPILSFHSSVVRVRWRVGRQGELPCLL
AVATMGTAAGKAAVTVCKLQGESSEEGIGHGEGGGSDGGQGGRRGWMGSE
RLIREDRFPLDARDVWGVEWEPGQGRRLLPCLSHGPLLVVDVEARRQLRH
SFRLPSDCFAACWSTGGESSNGSSNSSSSEAEEGVFLGLRNGQVRFVDLR
APTGIAQPLTTMGSVVDQIEMLPNGRGLLVSDRLGALRLLDLRLVSSLPG
AGAAGAAGGLASTRTTTAYLRDFPAPRMSNTPASTGFVLDRVDGSLVLTL
TTRGQLRTYDLNAPQREEEWKDGRRTHVCVADMLPLLSSGFVNDAALTIP
ATTGAAAPPRFFLARRWAGEGWDVSGRGREESGSLIGNGIVDVWPSKLVC
GDRTSGRIRQLRLQRESCGREKEG*
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mRNA from alignment at chr21:440506..442738+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01460.1 ID=NO21G01460.1|Name=NO21G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2233bp|location=Sequence derived from alignment at chr21:440506..442738+ (Nannochloropsis oceanica)
ATGAAAAGCGGAGATTGTAGCACGAGGGGAGGTCGGCGAGATGGAGGGCG
AGGCGGCAGGGGCAGTGGGCGTGTAGACTCCTCACGCGAGCAAAAGCACA
AAGACTCGGCCGCGGCACCAGGCAATGGGCGGCGGAGGCGCAGCAGAGGC
ATCGATCCTGGTGCATTTGAGCTGCAGCTGGAGGAGCAGCGGCAGAGACA
ACAGCAGCGACGAGAGGGAGGAAATGGAGGCGGAGAACGAGGAGAAGATA
ACGGAGGAGGAAGTGCAATCGGGGAACAGCGCACAAGCTCTGTTAAATCA
GGCCCGCATAACACTACACCACCGTCAATCTCCGCTCCCTCATCCTCCGA
CCAGCAGCGATCGGAGCAGCGTCGCCCTCAGTCATTAATTCGAGGTACGG
CTTGTACAAAAAAAGGGTCACTGCGCGGCTCCGCAAATCGTATAGCTTTT
CTTTGAGCCACACGTTCTGGAGAAGTGGGCGTATACTTATTACCATCTTT
TCAAAATGAAACACATTTCTGCGTGCTTTGGCGCTCCTCTTCGTCTCTTT
TTCAAGGTACTCATTCTTTCCGTCATTCCTTCCTATTTGCGCCATTTCCC
AGGCTTCCAATACGACGAGGCCCGCGGCCGGTACTTTCCTACCTCTTCCC
CCTTCTTCTCCTCTTCTTCTTCTTCAGAGCCCTTTCGGCCTCCCAAAAAT
CTTCGTGGCGCCTCTTCCTTATCGACGCTACCAGCATCCGCCTCCGCCTT
CTCCTCATTATCCACCTCCTCCTTTTCGAAAGGAGCGCCATTTGTCTGTG
TAAACTTCACCCGCCGCCTGCGCGAACGAGAATGGCGACACGGACAACAG
CAGCTTCACATGGGATCACTTCACAGGCTCCTTCACCTGAGCACCTCCAC
AGATCTAGGCCAGGAAGGCACATTGGAGGACATCGATGTGGCGGGGGGTG
GAGTAGTAACAGGAGCTCGCAACGGCATGCTACACGTGAGCGCCCTTCCC
CTATCATCCGACGAATTCCCTCGGCGCTGGCCTATTTTGAGCTTTCACTC
TTCAGTGGTACGCGTTCGTTGGCGGGTCGGCAGGCAGGGAGAGCTGCCGT
GTCTCCTGGCGGTTGCGACGATGGGAACGGCGGCGGGAAAGGCGGCTGTA
ACGGTGTGCAAGCTCCAGGGGGAAAGTAGTGAAGAAGGAATCGGGCATGG
AGAAGGAGGAGGAAGCGATGGAGGACAGGGAGGAAGAAGAGGATGGATGG
GAAGCGAAAGGCTAATTCGAGAGGATCGATTTCCGTTGGATGCTCGGGAT
GTGTGGGGGGTGGAGTGGGAGCCGGGGCAAGGGCGGCGCCTCCTTCCCTG
CCTCTCCCATGGGCCTTTGCTCGTGGTGGACGTTGAGGCGCGTCGGCAAT
TACGGCATTCTTTTCGGTTGCCGAGCGATTGTTTTGCAGCATGTTGGAGC
ACTGGTGGCGAAAGCAGCAATGGCAGCAGCAACAGTAGCAGCAGTGAGGC
AGAGGAGGGTGTGTTTTTGGGGCTGAGGAATGGACAGGTGCGGTTCGTGG
ACTTGAGGGCACCGACAGGGATAGCTCAGCCCTTGACGACAATGGGTTCT
GTTGTCGACCAGATTGAGATGCTACCGAATGGGAGGGGCTTGTTAGTGAG
TGATCGTTTGGGTGCCCTGCGTTTGCTCGACCTGCGTCTTGTGTCCTCCC
TACCTGGTGCTGGTGCTGCTGGTGCTGCTGGTGGCTTGGCTTCGACGAGG
ACAACGACCGCCTACCTACGTGACTTCCCCGCTCCCCGCATGTCCAATAC
TCCTGCGAGCACTGGCTTCGTCCTCGACCGCGTAGATGGCTCCCTCGTTC
TCACCCTCACCACCCGAGGGCAGCTTCGCACCTATGACTTGAATGCACCG
CAAAGGGAAGAGGAGTGGAAAGATGGGAGGCGGACCCATGTGTGTGTCGC
CGACATGCTTCCGCTTCTCTCTTCGGGATTTGTGAATGATGCCGCACTTA
CTATACCTGCTACCACTGGTGCTGCTGCGCCGCCGCGCTTCTTTTTGGCT
CGTCGTTGGGCAGGAGAGGGGTGGGATGTTTCGGGGAGAGGGCGGGAGGA
ATCGGGCAGTCTTATCGGGAATGGGATTGTCGACGTGTGGCCGTCGAAGC
TGGTATGTGGGGATAGGACGTCAGGGCGCATACGGCAGTTGCGGCTGCAG
AGGGAGAGTTGCGGCCGTGAGAAGGAAGGATAG
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Coding sequence (CDS) from alignment at chr21:440506..442738+

>NO21G01460.1 ID=NO21G01460.1|Name=NO21G01460.1|organism=Nannochloropsis oceanica|type=CDS|length=2025bp|location=Sequence derived from alignment at chr21:440506..442738+ (Nannochloropsis oceanica)
ATGAAAAGCGGAGATTGTAGCACGAGGGGAGGTCGGCGAGATGGAGGGCG
AGGCGGCAGGGGCAGTGGGCGTGTAGACTCCTCACGCGAGCAAAAGCACA
AAGACTCGGCCGCGGCACCAGGCAATGGGCGGCGGAGGCGCAGCAGAGGC
ATCGATCCTGGTGCATTTGAGCTGCAGCTGGAGGAGCAGCGGCAGAGACA
ACAGCAGCGACGAGAGGGAGGAAATGGAGGCGGAGAACGAGGAGAAGATA
ACGGAGGAGGAAGTGCAATCGGGGAACAGCGCACAAGCTCTGTTAAATCA
GGCCCGCATAACACTACACCACCGTCAATCTCCGCTCCCTCATCCTCCGA
CCAGCAGCGATCGGAGCAGCGTCGCCCTCAGTCATTAATTCGAGGCTTCC
AATACGACGAGGCCCGCGGCCGGTACTTTCCTACCTCTTCCCCCTTCTTC
TCCTCTTCTTCTTCTTCAGAGCCCTTTCGGCCTCCCAAAAATCTTCGTGG
CGCCTCTTCCTTATCGACGCTACCAGCATCCGCCTCCGCCTTCTCCTCAT
TATCCACCTCCTCCTTTTCGAAAGGAGCGCCATTTGTCTGTGTAAACTTC
ACCCGCCGCCTGCGCGAACGAGAATGGCGACACGGACAACAGCAGCTTCA
CATGGGATCACTTCACAGGCTCCTTCACCTGAGCACCTCCACAGATCTAG
GCCAGGAAGGCACATTGGAGGACATCGATGTGGCGGGGGGTGGAGTAGTA
ACAGGAGCTCGCAACGGCATGCTACACGTGAGCGCCCTTCCCCTATCATC
CGACGAATTCCCTCGGCGCTGGCCTATTTTGAGCTTTCACTCTTCAGTGG
TACGCGTTCGTTGGCGGGTCGGCAGGCAGGGAGAGCTGCCGTGTCTCCTG
GCGGTTGCGACGATGGGAACGGCGGCGGGAAAGGCGGCTGTAACGGTGTG
CAAGCTCCAGGGGGAAAGTAGTGAAGAAGGAATCGGGCATGGAGAAGGAG
GAGGAAGCGATGGAGGACAGGGAGGAAGAAGAGGATGGATGGGAAGCGAA
AGGCTAATTCGAGAGGATCGATTTCCGTTGGATGCTCGGGATGTGTGGGG
GGTGGAGTGGGAGCCGGGGCAAGGGCGGCGCCTCCTTCCCTGCCTCTCCC
ATGGGCCTTTGCTCGTGGTGGACGTTGAGGCGCGTCGGCAATTACGGCAT
TCTTTTCGGTTGCCGAGCGATTGTTTTGCAGCATGTTGGAGCACTGGTGG
CGAAAGCAGCAATGGCAGCAGCAACAGTAGCAGCAGTGAGGCAGAGGAGG
GTGTGTTTTTGGGGCTGAGGAATGGACAGGTGCGGTTCGTGGACTTGAGG
GCACCGACAGGGATAGCTCAGCCCTTGACGACAATGGGTTCTGTTGTCGA
CCAGATTGAGATGCTACCGAATGGGAGGGGCTTGTTAGTGAGTGATCGTT
TGGGTGCCCTGCGTTTGCTCGACCTGCGTCTTGTGTCCTCCCTACCTGGT
GCTGGTGCTGCTGGTGCTGCTGGTGGCTTGGCTTCGACGAGGACAACGAC
CGCCTACCTACGTGACTTCCCCGCTCCCCGCATGTCCAATACTCCTGCGA
GCACTGGCTTCGTCCTCGACCGCGTAGATGGCTCCCTCGTTCTCACCCTC
ACCACCCGAGGGCAGCTTCGCACCTATGACTTGAATGCACCGCAAAGGGA
AGAGGAGTGGAAAGATGGGAGGCGGACCCATGTGTGTGTCGCCGACATGC
TTCCGCTTCTCTCTTCGGGATTTGTGAATGATGCCGCACTTACTATACCT
GCTACCACTGGTGCTGCTGCGCCGCCGCGCTTCTTTTTGGCTCGTCGTTG
GGCAGGAGAGGGGTGGGATGTTTCGGGGAGAGGGCGGGAGGAATCGGGCA
GTCTTATCGGGAATGGGATTGTCGACGTGTGGCCGTCGAAGCTGGTATGT
GGGGATAGGACGTCAGGGCGCATACGGCAGTTGCGGCTGCAGAGGGAGAG
TTGCGGCCGTGAGAAGGAAGGATAG
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Synonyms
Publications