NO21G01160, NO21G01160 (gene) Nannochloropsis oceanica

Overview
NameNO21G01160
Unique NameNO21G01160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4951
Alignment locationchr21:353226..358176 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:353226..358176 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G01160 vs. NCBI_GenBank
Match: XP_005853371.1 (hypothetical protein NGA_0150002, partial [Nannochloropsis gaditana CCMP526] >EKU22987.1 hypothetical protein NGA_0150002, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 90.5 bits (223), Expect = 1.600e-14
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0 
Query:  268 RDNPVVLVFEIDISSTQTENLELREGQRLAPAVKAFCRQHGLDVATVAPALEDYLRGKAPPGL 331
            R+ PV+L+F+I+++ +Q E LELREGQRL  AV+AFCRQHGLD+A VA  LEDYLR K P GL
Sbjct:  258 REAPVILIFKIELTPSQIETLELREGQRLGQAVRAFCRQHGLDIAAVARPLEDYLRAKTPRGL 320
[Close]
BLAST of NO21G01160 vs. NCBI_GenBank
Match: EWM22647.1 (hypothetical protein Naga_100023g63 [Nannochloropsis gaditana])

HSP 1 Score: 90.5 bits (223), Expect = 1.600e-14
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0 
Query:  268 RDNPVVLVFEIDISSTQTENLELREGQRLAPAVKAFCRQHGLDVATVAPALEDYLRGKAPPGL 331
            R+ PV+L+F+I+++ +Q E LELREGQRL  AV+AFCRQHGLD+A VA  LEDYLR K P GL
Sbjct:  264 REAPVILIFKIELTPSQIETLELREGQRLGQAVRAFCRQHGLDIAAVARPLEDYLRAKTPRGL 326
The following BLAST results are available for this feature:
BLAST of NO21G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853371.11.600e-1465.08hypothetical protein NGA_0150002, partial [Nannoch... [more]
EWM22647.11.600e-1465.08hypothetical protein Naga_100023g63 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01160.1NO21G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01160.1NO21G01160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01160 ID=NO21G01160|Name=NO21G01160|organism=Nannochloropsis oceanica|type=gene|length=4951bp
GGCGGGAGGGAGGGGCTTGAGTTCTTCGAGGTGCTTGCCCGTGCAGAGAA
GGAGGGAGAGTTGGACGGGGCGGAATTTGGTGATATACAGATGAGCATTC
AACCAAGAGGCGATTTGAGTGAGATTGGGAAGAGTGGCACTCAAACCCAC
AATTTGAATGTGTGTCCCTCCTACGGCTCCTGCGAGGGAGGGAGAGAGTG
AGGCCGCCATCCGGAGCTTGGCCAGCATTACCTCGATCAGAAAGCCTCGG
CTATCATCCCCAATCATATGCAGTTCATCCACCACCACGACCTTCAACCT
GCCCAACTCTCCCCGTTCCAACAGCCGATTCACCAGGGCGTTTGCCCTCT
CGATTGTACACACCGCCACGTGCACGTTCTCCGTCAAGCTGGAATCAACC
GCATCGCTATGAAAGCTTTTCACCCCTAGCTCCAGACCCGCCCAGATCTG
TCGAAAATACCGTGCTTTTTCCTCTGCAAGCGCAATGAAGGGCACGACGA
ACATCGCGGTCCCACTCTCCACCGCATGGGTCAAGGCCCGCACCATTAAC
AACTCGGCCACCAGCGTCTTTCCCCCACTCGTTGGGGCACTATACACGAG
ATTCCTCCCCTCCCTCAGCACTCTCCCTTGTCCCGCCTCCAAACATTCCA
CTTGCCAGGGAAAGAGCTTGTGGACCCCCATTTCTTCGTAAGAACGCACG
AGCACTTCAGGCAACCCCCATGCCGGGTAAGACAAATGCGCCTTGGCCTC
CTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTTTCCCCGT
TCCCTCCCTCCTTCGCTCCTTGCAGACTCCTCTTTTCCACACTGCCACTG
CTGCTGCCGCTGCTCGTGACGAGACTTTTTTGAATTGCAGCTCTCTGCGC
ATTGAAAGTCAGTCCCCCTCTCATCTTCAGCAGGTCCTCCTTCGACCTCT
CCACCGCCTCCCTCCCCCTCAATCTATCTCCATTCAAAGCCAAGTAAACC
TTGTCAGCCACCCCCCCTCTTCTTCTTACCCCTCTACCTCGTCCAAGATA
AGCACTACCAACAGCAGTTCGTCGTCCTACACTACCTCCCCCTCTGCCTC
CTCCTTCTCCAACACGACGCCAGATCCCGAGCCCTTCCTGCAGCATGCCC
CCCCTCCCCCTCCCCCGTCCTTGCCCTCCCTCCTTCACTCCTCTTATTCT
TCCTCCACCTCCTTCTGCTCCTTCTGACGCTTGTGACGGGGGAGGAATAG
GTGGGGGGGAACCTCCGTGGCAGGGCGATGGTGCGAAACGTGGTGCGAGT
GAAGGAGAAAAGTTTGAAACCTCCTCTTCGTCCTTCAGCTGTTGCTGATG
TCGCTGCTGCTGCTGCTGTCGATAGGGCGACACGTGCGAATGAGAGAAAG
GATAGGAAATCTCAGGCTGCGGCGGCGAGGGCTGCAATTGATGTTTCTCG
GAGGGGGCTTCATGTCGTTGTGTGTGCTGCTGCTGCTGCAGCAGCTGAAC
ACGGAAAGATCGATAGGGACGATGAAGAGGAGGCGGAGGCGGAGGAAGAA
GATGACCGTGTCCTTCTTGCTGTGATGGTTGCCTTTTTTCTTCTTCCGCT
GCTGGTAGAGCGGTGACTAATGCTGCTGCTGCAGCTCCTATTGTCGATTT
CGCAGCTTCCGTTTGTGCTGTTGCTAGTACTGCCGAGGTCACTGCCGATG
TTGATTTGTGCCGTGAAAAGGGTAAAGGAGGAGGGAGGAAAGGAGGCAAG
TTTGACGAGAAAGAAGTATGGGGACAAGAGGGAGGAAGGGGAGGAGGGGG
GGCCGAGGCGCATGCTGGTGCATGCAATTTCAAGCCTTGCGGCGAGTCTT
GCACAGGGACAGGAGGAAGGAGAGGACGAGGAGGATGTGAAGAGCTTGAT
GAATATGCGTGAGAGAAAGAAGAGGATCGTGGAAGCGTTTGTTGGCAAGG
ACTGTGCTGCATGCGTTTTTTGCCGGTGGGGGAAGGAGCGGTTGGTCCTC
GGCCTAGTGAGTGTGTCAGCTGCATCGCTTTTCTCTGAGCAAGCAGCTCA
CAGCCACGCTGGGATATGTATCGACGAAAAGATGGTGTGGAGGAAGAAGG
AGGAGGTCGAGGAGGCGATGCTTCGAGGGCAGCTCGTGGTAGAGGTGATG
ACTCTGCTTCGGGTGGTGGTCCTGGGGACACTGCTTCCTCCTTCTCCGTC
CCCTCCTCGCGACCACGTTGGGAGATGTAGCGACCATGTGCGGGGAGATG
TTGGAGCATGACCGCTCGCTCCAAAGGAATTAGAGAAGGCGCTGTTACGG
AGACTGGTAGTTGAAATGTTGCTGCTTCAGATATTGGACCTGCTGTTGGG
GCGGCGGCTTCCTCATATACTCTCTCATGCCGGCATTCCTTCTTCCTTTC
CCCTTCCCATTGCTCCCCTTCCTCGACATCCTCGGCAAAGAAGGATACAA
ACTCTGCGCAATTGATAAAGTCGCGGTCGTCATCACTCAACAAGGCATTG
TATGACAAGGCAGAGGCAAGAGCTGGAGGCGGCGGGGGCAACTTAAGTGG
TGGGACGAGCGCGAGACTGGCAGAGCTGTCGGCCTGCACTGCTGCTCCGG
GCGAAGCCAACAGCCGTTTTGTACCCCGCGGAGAAGGCATCTGGAGAGGA
GACTGTCCATTGCGACCCAACGGCGCACGCATGGCGTTTGGTAGGATGGG
CGGAGTCCAGGAGGAGGCGGAAGCGGAAGGGGAAGTGGGGTCGGCTGGCT
GAATGGCATCTATGGGTGACGGTGGCGGCGGCGGCGGTTGCATTGGTCTT
GATGGTTTCCTTAGCTGGTCATGCAATAAACTGCCTTGTCTTGACTGTGT
CTGTGCTAGAGGAGGGGCTGGTTAAAGAAATTAGAAGCACGGTCTGTTGC
GGCATAAATCGGCGAGAGGCCTCGCTCGCGATGGAAGATTTGGACTCGAC
AACCGCACAGCATAGCAAACACAGTACGAAGAGTTCACACATCTATGTGA
TCTCTCACTACACAATTAGAAAGGCGTGAGCAGGCAGGGCATTTTCCAGG
CGTCAGCTCGTCCGCCGCAAGCTGAACAAGAAAGCCACACTTCGTCATAA
CCCTAGCTTCATCAAAGCCGGCCAACAATCGACACGATGGGACAAAGCGA
CTCCAAGGCGCGAAATAAGAGCAAGGgtaagccgctgccataatggctgt
gtctgtggtggcgtgatgatagcgcgggtgctctcttttcgtcagatgtt
tcgatccgaccagcgccctcccccatcccccaccccaacccttcccccac
aacagGCGGGTCCGATGCCTCTGAAAAAGGCCTGCCGCAGTCAGTGCAGC
AGAAACAGCAGCAGCCCACTGCACCCATTATCACGTCCCCAGTGGCAGCG
GTGCCGACTGGCTCAAAGGCCGCGCCGAACCCACCGAGTACTAGTGGTGG
AAGTGGTAGTTCCAGCACCCTGCCTCCGTCGTCAGCAGCGAAAGTCGCCG
TCGCCGCTACCACCAGCAAGGCGCCAGCACCACCATCAGCAGCTACGGCA
GTAGGTAAACCTGGTACCACTAGTCCCTCCACCTTCTCTGCTGTGGAAAA
AGGCAGCAGCAGCAGCAGCTGTAAGCCCGCCTCCTCCTCTTCTTCGACCC
TTCCTCCTCCGTCATCCTTTTCTGCATCCTCTTCTTCCTCGACGACCACA
AAGATAGCTAAAGCTAAAGCTTTCTCGCCTTCTCCATCGTCCATGCCGGA
GGAATCAGGAGATATAGTGCCAGAAATTCACCCTGTTGGGAATGGGAACA
TGTCCGGTCCTCTGACCGCCCCTCCCTCTTTGACTTCAAAGTCTACAACC
ACCAACAATAAAAATAAGAATAAGAAGAAAAATGATAACAACAATAAGAA
GGAGAAGGGCACACACGAGAGGAAGACGGGAGCTGGTCCTGATGCAGCAG
CAGCGGCAGGAGGAGCAGGAGGAGAAGAAAGAGGAGAATCTGCCGTTCTC
CCCTCCACTGGAGGAGCAAAGAGCAAGAAGCAGCTTAAGAAGGCAAAAAA
CAATCCCTTCGCCTGGCGCGATAATCCCGTCGTTCTAGTCTTCGAGATTG
ACATTTCTTCCACCCAGACCGAGAACTTGGAACTGAGGGAAGGGCAGCGT
CTGGCCCCTGCTGTGAAGGCATTTTGTCGGCAGCACGGCTTGGATGTGGC
TACCGTTGCGCCCGCCCTTGAAGACTACTTGAGAGGTAAAGCCCCTCCTG
GGCTTTTGCCGCCGGAAGCTTCTGGTCCTCCGAAAGGAAATAGGAATCAA
GAGCAGCAGCCGCTTCCGCAGCAGCAGCAGGAGGGACGGCAGCAACAGTC
GCAGCAGCAGAAAAAGAAGAAAGGAGGGAAAAGTACAGGAGGCGGCGGTG
GTAACGGTGGTGGTGGTGGAGGAGGAGGTAGAGAAGGAGGAGAAAGAGAA
AGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGCTGCGGGAATGGGAATGGAGGGAAAAAACAGCAGCGCGGGA
ATGGGAGAGGAGAGGAGACAGGAAGAAAGGGAGGAGGAAGAAAAGGAGGA
GGAGAAGTGCATGGACAGTCCCAACAGCAACAGCAACAGCAGCCGCAGCC
GCAGCAGCAGCAGCAACAGGAGGAGGAGGAGGGGGGGGAGGGTGATGGGC
AAGTGCCAGCTTTGCACCCGGCGGGATGGATGGAGTGAATGGAAGTTGGT
AGAGGATGACTTGTGGCATTATCTGGAAGCAAAGGTAAAATTAAAAGGCA
AAGAAGAGGTTTTGGGAAGAAGTGAGCGGGACCCAGGTACGGAGACCCGC
AGAGAGCAGTATGCACAACCAACGGATCGGATCAGTGGAATGGAGGGGAA
TGCAGAGAGGAGAAAGAATGAATTATGAAAGCCCAAAACCCCGACTTGAG
A
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protein sequence of NO21G01160.1

>NO21G01160.1-protein ID=NO21G01160.1-protein|Name=NO21G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MGQSDSKARNKSKGGSDASEKGLPQSVQQKQQQPTAPIITSPVAAVPTGS
KAAPNPPSTSGGSGSSSTLPPSSAAKVAVAATTSKAPAPPSAATAVGKPG
TTSPSTFSAVEKGSSSSSCKPASSSSSTLPPPSSFSASSSSSTTTKIAKA
KAFSPSPSSMPEESGDIVPEIHPVGNGNMSGPLTAPPSLTSKSTTTNNKN
KNKKKNDNNNKKEKGTHERKTGAGPDAAAAAGGAGGEERGESAVLPSTGG
AKSKKQLKKAKNNPFAWRDNPVVLVFEIDISSTQTENLELREGQRLAPAV
KAFCRQHGLDVATVAPALEDYLRGKAPPGLLPPEASGPPKGNRNQEQQPL
PQQQQEGRQQQSQQQKKKKGGKSTGGGGGNGGGGGGGGREGGERERERGG
GGGGGGGGGGGGGGGCGNGNGGKKQQRGNGRGEETGRKGGGRKGGGEVHG
QSQQQQQQQPQPQQQQQQEEEEGGEGDGQVPALHPAGWME*
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Synonyms
Publications