Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:353226..358176 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01160.1 vs.
Match: EWM22647.1 (hypothetical protein Naga_100023g63 [Nannochloropsis gaditana])
HSP 1 Score: 64.7 bits (156), Expect = 9.200e-7
Identity = 115/364 (31.59%), Postives = 174/364 (47.80%), Query Frame = 0
Query: 44 AAVPTGSKAAPNPPSTSGGSGSSSTLP----PSSAAKVAVAATTSKAPAPPSAATAVGKPGTTS---PSTFSAVEKGSSSSSCKPASSSSSTLPPPSSFSASSSSSTTTKIAKAKAFSPSPSSMPEESGDIVPEIHPVGNGNMSGPLTAPPSLTSKSTTTNNKNKNKKKND--NNNKKEKGTHERKTGAGPDAAAAAGGAGGEERGESAVLPS--TGGAKSKKQLKKAKNNPFAWRDNPVVLVFEIDISSTQTENLELREGQRLAPAVKAFCRQHGLDVATVAPALEDYLRGKAPPGLLPPEASGPPKGNRNQEQQPLPQQQQEGRQQQSQQQKKKKGGKSTGGGGGNGGGGGGGGREGGERER 397
+AV S + + S GS LP PSS A++ + P P A + KP S P+ + ++S KP ++ S+ P + SA +S+ ++ + +P SS +++PEI P+G G + PP L +N K+ + K+KG ++K + A G+G V PS T G + + Q + + R+ PV+L+F+I+++ +Q E LELREGQRL AV+AFCRQHGLD+A VA LEDYLR K P GLL ASGPP ++ P++Q + + + QQ+ KG + GG GG GR+ +ER
Sbjct: 43 SAVVYLSMGQSDSKNRSRSKGSDKGLPQQTIPSSKPGAPTASSAPRTPNPSQAIPSSSKPHVASDRTPNDNVSRPPPMPAASKKPKATPSNVATEPVASSAPTSAVSSENKERQMDTAPPSSSSSVSPDEVLPEIRPIGEGETMAMVETPPCLPGNEKNNHNTESEKRSAELPGAGNKKKGKQQKKKKK--ELARTQPGSG------DPVDPSDLTNGKQQEDQEGERQ------REAPVILIFKIELTPSQIETLELREGQRLGQAVRAFCRQHGLDIAAVARPLEDYLRAKTPRGLL---ASGPPSSDK-------PRRQPKADRPRRAQQEGGKGKRDV-----QQGGKGGSGRKPRRQER 377
The following BLAST results are available for this feature:
BLAST of NO21G01160.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 Expect = 9.20e-7 / Id = 31.59 Sequence EWM22647.1
Match Name E-value Identity Description
EWM22647.1 9.200e-7 31.59 hypothetical protein Naga_100023g63 [Nannochlorops... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G01160.1 ID=NO21G01160.1|Name=NO21G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=4822bp back to top protein sequence of NO21G01160.1
>NO21G01160.1-protein ID=NO21G01160.1-protein|Name=NO21G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp back to top mRNA from alignment at chr21:353226..358176-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01160.1 ID=NO21G01160.1|Name=NO21G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=4951bp|location=Sequence derived from alignment at chr21:353226..358176- (Nannochloropsis oceanica)ATGGGACAAAGCGA
CTCCAAGGCGCGAAATAAGAGCAAGG GTAAGCCGCTGCCATAATGGCTGT
GTCTGTGGTGGCGTGATGATAGCGCGGGTGCTCTCTTTTCGTCAGATGTT
TCGATCCGACCAGCGCCCTCCCCCATCCCCCACCCCAACCCTTCCCCCAC
AACAGGCGGGTCCGATGCCTCTGAAAAAGGCCTGCCGCAGTCAGTGCAGC
AGAAACAGCAGCAGCCCACTGCACCCATTATCACGTCCCCAGTGGCAGCG
GTGCCGACTGGCTCAAAGGCCGCGCCGAACCCACCGAGTACTAGTGGTGG
AAGTGGTAGTTCCAGCACCCTGCCTCCGTCGTCAGCAGCGAAAGTCGCCG
TCGCCGCTACCACCAGCAAGGCGCCAGCACCACCATCAGCAGCTACGGCA
GTAGGTAAACCTGGTACCACTAGTCCCTCCACCTTCTCTGCTGTGGAAAA
AGGCAGCAGCAGCAGCAGCTGTAAGCCCGCCTCCTCCTCTTCTTCGACCC
TTCCTCCTCCGTCATCCTTTTCTGCATCCTCTTCTTCCTCGACGACCACA
AAGATAGCTAAAGCTAAAGCTTTCTCGCCTTCTCCATCGTCCATGCCGGA
GGAATCAGGAGATATAGTGCCAGAAATTCACCCTGTTGGGAATGGGAACA
TGTCCGGTCCTCTGACCGCCCCTCCCTCTTTGACTTCAAAGTCTACAACC
ACCAACAATAAAAATAAGAATAAGAAGAAAAATGATAACAACAATAAGAA
GGAGAAGGGCACACACGAGAGGAAGACGGGAGCTGGTCCTGATGCAGCAG
CAGCGGCAGGAGGAGCAGGAGGAGAAGAAAGAGGAGAATCTGCCGTTCTC
CCCTCCACTGGAGGAGCAAAGAGCAAGAAGCAGCTTAAGAAGGCAAAAAA
CAATCCCTTCGCCTGGCGCGATAATCCCGTCGTTCTAGTCTTCGAGATTG
ACATTTCTTCCACCCAGACCGAGAACTTGGAACTGAGGGAAGGGCAGCGT
CTGGCCCCTGCTGTGAAGGCATTTTGTCGGCAGCACGGCTTGGATGTGGC
TACCGTTGCGCCCGCCCTTGAAGACTACTTGAGAGGTAAAGCCCCTCCTG
GGCTTTTGCCGCCGGAAGCTTCTGGTCCTCCGAAAGGAAATAGGAATCAA
GAGCAGCAGCCGCTTCCGCAGCAGCAGCAGGAGGGACGGCAGCAACAGTC
GCAGCAGCAGAAAAAGAAGAAAGGAGGGAAAAGTACAGGAGGCGGCGGTG
GTAACGGTGGTGGTGGTGGAGGAGGAGGTAGAGAAGGAGGAGAAAGAGAA
AGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGCTGCGGGAATGGGAATGGAGGGAAAAAACAGCAGCGCGGGA
ATGGGAGAGGAGAGGAGACAGGAAGAAAGGGAGGAGGAAGAAAAGGAGGA
GGAGAAGTGCATGGACAGTCCCAACAGCAACAGCAACAGCAGCCGCAGCC
GCAGCAGCAGCAGCAACAGGAGGAGGAGGAGGGGGGGGAGGGTGATGGGC
AAGTGCCAGCTTTGCACCCGGCGGGATGGATGGAGTGA back to top Coding sequence (CDS) from alignment at chr21:353226..358176-
>NO21G01160.1 ID=NO21G01160.1|Name=NO21G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr21:353226..358176- (Nannochloropsis oceanica) back to top