NO21G00480, NO21G00480 (gene) Nannochloropsis oceanica

Overview
NameNO21G00480
Unique NameNO21G00480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length986
Alignment locationchr21:167295..168280 +

Link to JBrowse

Properties
Property NameValue
DescriptionAutophagy-related protein 3
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:167295..168280 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007135Autophagy-rel_prot_3
IPR019461Autophagy-rel_prot_3_C
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0006914autophagy
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
[Close]
BLAST of NO21G00480 vs. NCBI_GenBank
Match: CBJ29817.1 (Autophagy-related protein3 [Ectocarpus siliculosus])

HSP 1 Score: 157.1 bits (396), Expect = 7.300e-35
Identity = 74/148 (50.00%), Postives = 99/148 (66.89%), Query Frame = 0 
Query:   94 AMLPSESLPYMKTEEPQASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPLSAPALFEDIQQDYAHRTVTIETHPHTGVPQASIHPCQHANVMXXXXXXXXXXXXXXXXXXXPRMDQYLFIFLKFLQSMIPTIDYDFTVEVDVGTG 242
            A + +  + Y+  +EP   ++ +RSYD+SITYDK++QTPR +L GYDE GQPL A  +FED+ QDYA +TVT+E HPH     AS+HPC+HA+ M                    R+DQYLFIFLKF+QS++PTIDYD+T+ VD G G
Sbjct:  274 ATVQAGGVSYLTAQEPDDPILPTRSYDLSITYDKHHQTPRMFLFGYDESGQPLPAEEVFEDVMQDYARQTVTMEPHPHLSSHHASVHPCKHASTM------KIMLENLTKGGKEARVDQYLFIFLKFIQSVVPTIDYDYTMSVDAGGG 415
[Close]
BLAST of NO21G00480 vs. NCBI_GenBank
Match: XP_008875836.1 (hypothetical protein H310_11064 [Aphanomyces invadans] >ETV95643.1 hypothetical protein H310_11064 [Aphanomyces invadans])

HSP 1 Score: 154.1 bits (388), Expect = 6.200e-34
Identity = 76/146 (52.05%), Postives = 98/146 (67.12%), Query Frame = 0 
Query:  100 SLPYMKTEEPQ-------ASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPLSAPALFEDIQQDYAHRTVTIETHPH-TGVPQASIHPCQHANVMXXXXXXXXXXXXXXXXXXXPRMDQYLFIFLKFLQSMIPTIDYDFTVEVD 238
            +L Y+ T EP+        +LV +R+YD+SI+YDKYY+TPR WL GY+E G PL    + +DI QDYA++TVTI+ HPH TG+P ASIHPCQH  VM                    R DQY+FIFLKFLQS+IPTIDYD+T++V+
Sbjct:  178 TLTYIATSEPEPTELDADGNLVYTRTYDVSISYDKYYRTPRVWLFGYEESGAPLKPDDMLQDIMQDYANKTVTIDPHPHLTGIPHASIHPCQHGAVMKRIVANLMAGGKEV------RSDQYMFIFLKFLQSVIPTIDYDYTIDVE 317
[Close]
BLAST of NO21G00480 vs. NCBI_GenBank
Match: XP_013757210.1 (hypothetical protein AMSG_05805 [Thecamonas trahens ATCC 50062] >KNC50044.1 hypothetical protein AMSG_05805 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 154.1 bits (388), Expect = 6.200e-34
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 0 
Query:  110 QASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPLSAPALFEDIQQDYAHRTVTIETHPHTGVPQASIHPCQHANVMXXXXXXXXXXXXXXXXXXXPRMDQYLFIFLKFLQSMIPTIDYDFTVEVD 238
            +A+++ +R+YD+SITYDKYYQTPR WL GYDE GQPLS   +FEDI QD+A +TVT E HPH+G+P ASIHPC+H+NVM                    R DQY+F+F+KF+ ++IPTIDYD T +++
Sbjct:  178 EANILMTRTYDVSITYDKYYQTPRVWLFGYDETGQPLSQEQIFEDISQDHAKKTVTFEPHPHSGIPHASIHPCKHSNVMKKIIDNLGLSGQTL------RADQYMFLFVKFISTIIPTIDYDHTFDME 299
[Close]
BLAST of NO21G00480 vs. NCBI_GenBank
Match: GAQ83284.1 (autophagy-related protein 3 [Klebsormidium nitens])

HSP 1 Score: 153.3 bits (386), Expect = 1.100e-33
Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = 0 
Query:  101 LPYMKTEEP-QASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPLSAPALFEDIQQDYAHRTVTIETHPHTGVPQASIHPCQHANVMXXXXXXXXXXXXXXXXXXXPRMDQYLFIFLKFLQSMIPTIDYDFTVEVDVGTGARE 245
            +PY++ EEP   +++ +R+YD+SITYDKYYQTPR WL GYDE  +PL    + +D+ QD+A +TVTIE HPH     AS+HPC+H+ VM                   PR+DQYLFIFLKF+ S+IPTI+YD+TV+ D+G   R+
Sbjct:  178 IPYLRAEEPGDENILRTRTYDLSITYDKYYQTPRVWLYGYDEAKRPLHPEQVLQDVSQDHARKTVTIEDHPHLHGKHASVHPCKHSLVM------KKILDVICAKGADPRVDQYLFIFLKFIASVIPTIEYDYTVDFDLGPSKRQ 316
[Close]
BLAST of NO21G00480 vs. NCBI_GenBank
Match: PIA18462.1 (hypothetical protein COEREDRAFT_79912 [Coemansia reversa NRRL 1564])

HSP 1 Score: 152.9 bits (385), Expect = 1.400e-33
Identity = 70/134 (52.24%), Postives = 94/134 (70.15%), Query Frame = 0 
Query:  105 KTEEPQASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPLSAPALFEDIQQDYAHRTVTIETHPHTGVPQASIHPCQHANVMXXXXXXXXXXXXXXXXXXXPRMDQYLFIFLKFLQSMIPTIDYDFTVEVDV 239
            K +  +  ++ +R+YD+SITYDKYYQTPR WL GYDE+G+PL+   +FEDI +D+A +TVTIETHPH  V QASIHPC+HA+VM                    R+DQYL IFLKF+ S++PTI+YD+T+  D+
Sbjct:  214 KVDGDEDKILRTRTYDLSITYDKYYQTPRVWLFGYDEQGKPLTTRQIFEDISEDHAKKTVTIETHPHLAVQQASIHPCKHAHVMKKIIERAVEGGRKEI-----RVDQYLIIFLKFMSSVLPTIEYDYTMSTDI 342
[Close]
BLAST of NO21G00480 vs. NCBI_GenBank
Match: XP_008902199.1 (hypothetical protein PPTG_09093 [Phytophthora parasitica INRA-310] >ETI51924.1 hypothetical protein F443_04836 [Phytophthora parasitica P1569] >ETK91793.1 hypothetical protein L915_04707 [Phytophthora parasitica] >ETL45188.1 hypothetical protein L916_04666 [Phytophthora parasitica] >ETL98359.1 hypothetical protein L917_04553 [Phytophthora parasitica] >ETN12200.1 hypothetical protein PPTG_09093 [Phytophthora parasitica INRA-310] >ETO80679.1 hypothetical protein F444_04876 [Phytophthora parasitica P1976] >ETP21700.1 hypothetical protein F441_04833 [Phytophthora parasitica CJ01A1] >ETP49608.1 hypothetical protein F442_04903 [Phytophthora parasitica P10297])

HSP 1 Score: 152.5 bits (384), Expect = 1.800e-33
Identity = 95/234 (40.60%), Postives = 120/234 (51.28%), Query Frame = 0 
Query:   13 AGEKEEGGNGVLLGGVGSTLKVVDGHFALKEQEGKEGEVPRXXXXXXXXXXXXYADMASYEEAGLGGQXXXXXXXXXXXXVAMLPSESLPYMKTEEP---QASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPLSAPALFEDIQQDYAHRTVTIETHPH-TGVPQASIHPCQHANVMXXXXXXXXXXXXXXXXXXXP-----RMDQYLFIFLKFLQSMIPTIDYDFTVEVD 238
            A  +    NG +LG       +VD HF      G E E+                D++SYEE                   A+ PS    Y+   EP     +++ +R+YD+SITYDKYYQTPR WL GYDE   PLS   +FEDI QDYA+RTVT+E HPH + +  ASIHPCQH  VM                         R DQYLF+FLKF+QS+IPTIDYD+T+EV+
Sbjct:  133 ASAQSSNSNGGILGA------IVDEHFKAAPAGGAESEI---------------RDLSSYEE---------EDNLVEDDEAALGPSTG--YLVASEPDDADDAILRTRTYDLSITYDKYYQTPRVWLFGYDERNAPLSGDQMFEDIMQDYANRTVTMEPHPHRSSLVHASIHPCQHGAVMKRIIANLKMRKPGEMETEEQAANEIRSDQYLFLFLKFIQSVIPTIDYDYTIEVN 334
[Close]
BLAST of NO21G00480 vs. NCBI_GenBank
Match: KUF84142.1 (Autophagy-related protein 3 [Phytophthora nicotianae])

HSP 1 Score: 152.5 bits (384), Expect = 1.800e-33
Identity = 95/234 (40.60%), Postives = 120/234 (51.28%), Query Frame = 0 
Query:   13 AGEKEEGGNGVLLGGVGSTLKVVDGHFALKEQEGKEGEVPRXXXXXXXXXXXXYADMASYEEAGLGGQXXXXXXXXXXXXVAMLPSESLPYMKTEEP---QASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPLSAPALFEDIQQDYAHRTVTIETHPH-TGVPQASIHPCQHANVMXXXXXXXXXXXXXXXXXXXP-----RMDQYLFIFLKFLQSMIPTIDYDFTVEVD 238
            A  +    NG +LG       +VD HF      G E E+                D++SYEE                   A+ PS    Y+   EP     +++ +R+YD+SITYDKYYQTPR WL GYDE   PLS   +FEDI QDYA+RTVT+E HPH + +  ASIHPCQH  VM                         R DQYLF+FLKF+QS+IPTIDYD+T+EV+
Sbjct:  133 ASAQSSNSNGGILGA------IVDEHFKAAPAGGAESEI---------------RDLSSYEE---------EDNLVEDDEAALGPSTG--YLVASEPDDADDAILRTRTYDLSITYDKYYQTPRVWLFGYDERNAPLSGDQMFEDIMQDYANRTVTMEPHPHRSSLVHASIHPCQHGAVMKRIIANLKMRKPGEMETEEQAANEIRSDQYLFLFLKFIQSVIPTIDYDYTIEVN 334
[Close]
BLAST of NO21G00480 vs. NCBI_GenBank
Match: OQR93259.1 (autophagocytosis associated protein [Achlya hypogyna])

HSP 1 Score: 152.5 bits (384), Expect = 1.800e-33
Identity = 76/146 (52.05%), Postives = 97/146 (66.44%), Query Frame = 0 
Query:  100 SLPYMKTEEPQ-------ASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPLSAPALFEDIQQDYAHRTVTIETHPH-TGVPQASIHPCQHANVMXXXXXXXXXXXXXXXXXXXPRMDQYLFIFLKFLQSMIPTIDYDFTVEVD 238
            +L Y+   EP+        +LV +R+YD+SITYDKYY+TPR WL GY+E G PL    + +DI QDYA++TVT+E HPH  G+PQA+IHPCQH  VM                    R DQY+FIFLKFLQS+IPTIDYD+T+EV+
Sbjct:  167 ALTYIAATEPEPLEHDADGNLVYTRTYDLSITYDKYYRTPRVWLFGYEESGAPLKPEDMLQDIMQDYANKTVTLEAHPHQPGIPQAAIHPCQHGAVMKRIVANLMAGGKEI------RADQYMFIFLKFLQSVIPTIDYDYTMEVE 306
[Close]
BLAST of NO21G00480 vs. NCBI_GenBank
Match: XP_002900448.1 (autophagocytosis associated protein, putative [Phytophthora infestans T30-4] >EEY60241.1 autophagocytosis associated protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 152.1 bits (383), Expect = 2.300e-33
Identity = 85/179 (47.49%), Postives = 106/179 (59.22%), Query Frame = 0 
Query:   68 DMASYEEAGLGGQXXXXXXXXXXXXVAMLPSESLPYMKTEEP---QASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPLSAPALFEDIQQDYAHRTVTIETHPH-TGVPQASIHPCQHANVMXXXXXXXXXXXXXXXXXXXP-----RMDQYLFIFLKFLQSMIPTIDYDFTVEVD 238
            D++SYEE                   A+ PS S  Y+   EP   + +++ +R+YD+SITYDKYYQTPR WL GYDE   PLS   LFEDI QDYA+RTVT+E HPH + +  ASIHPCQH  VM                         R DQYLF+FLKF+QS+IPTIDYD+T+EV+
Sbjct:  132 DLSSYEE---------EDNLVEDDEAALGPSTS-SYLVASEPDDAEVAILRTRTYDLSITYDKYYQTPRVWLFGYDERNAPLSGDQLFEDIMQDYANRTVTMEPHPHRSALVHASIHPCQHGAVMKRIIANLKMRQPGETETEEQAANEIRSDQYLFLFLKFIQSVIPTIDYDYTIEVN 300
[Close]
BLAST of NO21G00480 vs. NCBI_GenBank
Match: XP_009829078.1 (hypothetical protein H257_05797 [Aphanomyces astaci] >ETV81220.1 hypothetical protein H257_05797 [Aphanomyces astaci])

HSP 1 Score: 151.4 bits (381), Expect = 4.000e-33
Identity = 75/146 (51.37%), Postives = 97/146 (66.44%), Query Frame = 0 
Query:  100 SLPYMKTEEPQ-------ASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPLSAPALFEDIQQDYAHRTVTIETHPH-TGVPQASIHPCQHANVMXXXXXXXXXXXXXXXXXXXPRMDQYLFIFLKFLQSMIPTIDYDFTVEVD 238
            +L Y+ T EP+        +LV +R+YD+SI+YDKYY+TPR WL GY+E G PL    + +DI QDYA++TVTI+ HPH  G+P ASIHPCQH  VM                    R DQY+FIFLKFLQS+IPTIDYD+T++V+
Sbjct:  183 TLTYIATSEPEPTELDADGNLVYTRTYDLSISYDKYYRTPRVWLFGYEESGAPLKPDDMLQDIMQDYANKTVTIDPHPHLQGIPHASIHPCQHGAVMKRIVANLMGGGKEV------RSDQYMFIFLKFLQSVIPTIDYDYTIDVE 322
The following BLAST results are available for this feature:
BLAST of NO21G00480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ29817.17.300e-3550.00Autophagy-related protein3 [Ectocarpus siliculosus... [more]
XP_008875836.16.200e-3452.05hypothetical protein H310_11064 [Aphanomyces invad... [more]
XP_013757210.16.200e-3453.91hypothetical protein AMSG_05805 [Thecamonas trahen... [more]
GAQ83284.11.100e-3349.66autophagy-related protein 3 [Klebsormidium nitens][more]
PIA18462.11.400e-3352.24hypothetical protein COEREDRAFT_79912 [Coemansia r... [more]
XP_008902199.11.800e-3340.60hypothetical protein PPTG_09093 [Phytophthora para... [more]
KUF84142.11.800e-3340.60Autophagy-related protein 3 [Phytophthora nicotian... [more]
OQR93259.11.800e-3352.05autophagocytosis associated protein [Achlya hypogy... [more]
XP_002900448.12.300e-3347.49autophagocytosis associated protein, putative [Phy... [more]
XP_009829078.14.000e-3351.37hypothetical protein H257_05797 [Aphanomyces astac... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00480.1NO21G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00480.1NO21G00480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00480 ID=NO21G00480|Name=NO21G00480|organism=Nannochloropsis oceanica|type=gene|length=986bp
ATGCTGCCGCGGAGGGAGGGAAAGGGGGAGGGGGCGGCGGGGGAGAAGGA
GGAGGGAGGGAATGGAGTGTTGTTGGGAGGGGTGGGAAGTACACTCAAGG
TCGTAGACGGACATTTCGCACTCAAGGAGCAGGAAGGGAAAGAGGGCGAG
GTGCCGAGGGAGGGAGGGGTTGAGGGTGAGGGGTCCGACGAGGGGTATGC
GGACATGGCTTCGTATGAAGAGGCCGGACTAGGTGGACAGGAAGGAGGGG
AGGAAGGGAGGGAGGGAGGGGAGGACGTGGCGATGTTACCGTCGGAGAGC
TTACCGTACATGAAGACGGAGGAGCCGCAGGCGTCGCTGGTCGCTTCAAG
GTCTTACGATATATCCATCACTTACGACAAGTACTACCAGACACCGCGGG
CCTGGCTTTTGGGCTATGACGAGgtaatctttccctcttaccccattttg
aggactagggcgagttgtgctgtatttctatctgaaatcgatttatttat
ttatttttcacttgaaacgtgtttaaattaggcagtgcatttatttattt
attcctaccacaaataatcttattacccgccatcctgtattacccgccat
cctgtgcatattaatagGAAGGTCAGCCTCTGTCAGCCCCCGCTCTCTTT
GAAGATATTCAGCAGGATTATGCTCACCGCACCGTCACGATTGAGACCCA
CCCCCACACCGGTGTGCCTCAAGCGTCCATCCACCCTTGCCAGCACGCCA
ATGTCATGAAGAATATTGTGCGGAATCTATCTCAGGGGAGGGAGGGAGGA
AGGGAGGGAGGGGGGCCACGCATGGACCAGTATTTGTTCATCTTTTTGAA
ATTCTTGCAGAGCATGATTCCTACGATTGATTATGACTTCACGGTGGAGG
TGGACGTGGGGACAGGAGCCAGGGAGGGAGGAAAGGTGGAGGACGAGGGG
ATAGTAATGGTATTGGAGGAAATTATGGAGGGGTGA
back to top

protein sequence of NO21G00480.1

>NO21G00480.1-protein ID=NO21G00480.1-protein|Name=NO21G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MLPRREGKGEGAAGEKEEGGNGVLLGGVGSTLKVVDGHFALKEQEGKEGE
VPREGGVEGEGSDEGYADMASYEEAGLGGQEGGEEGREGGEDVAMLPSES
LPYMKTEEPQASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPLSAPA
LFEDIQQDYAHRTVTIETHPHTGVPQASIHPCQHANVMKNIVRNLSQGRE
GGREGGGPRMDQYLFIFLKFLQSMIPTIDYDFTVEVDVGTGAREGGKVED
EGIVMVLEEIMEG*
back to top
Synonyms
Publications