NO21G00480.1, NO21G00480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00480.1
Unique NameNO21G00480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length792
Alignment locationchr21:167295..168280 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:167295..168280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00480.1 vs.
Match: XP_002295882.1 (autophagocytosis protein-like protein, partial [Thalassiosira pseudonana CCMP1335]; ACI64599.1 autophagocytosis protein-like protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 174.5 bits (441), Expect = 4.400e-40
Identity = 102/248 (41.13%), Postives = 143/248 (57.66%), Query Frame = 0 
Query:    8 KGEGAAGEKEEGGNGVLLGGVGSTLKVV-------DGHFALKEQEGKEGEVPREGGVEGEGSDEGYADMASYEEAGLGGQEGGEEGREGGEDVAMLPSESLPYMKTEEPQASLVASRSYDISITYDKYYQTPRAWLLGYDEEG--QPLSAPALFEDIQQDYAHRTVTIETHPHTGVPQASIHPCQHANVMKNIVRNLSQ------GREGGREGGGPRMDQYLFIFLKFLQSMIPTIDYDFTVEVDVGT 241
            +G GA G  ++     L+  + +T +V+       +  F + + EG++     +GG + +  DE YADMA +E+  +   E           V   P  +    K E     ++  R+YD+SITYDKYYQTPR WLLGY ++G  +PL+   + +D+  DYAHRTVTIE HP+     ASIHPCQH  VMK IV+NL++      G  GG   GGP ++ YLFIFLKF+ SMIPTI+YDFT++V   T
Sbjct:   74 EGCGAIGGLDDDDGDWLVSQILTTEEVIRREEKALEDEFDILDGEGEDNSENNQGGADDDQEDE-YADMADFEDDNVLEDEAA---------VVAAPVSTNATTKGENDNNHILKVRTYDLSITYDKYYQTPRVWLLGYADDGSSRPLTGDEMMQDVISDYAHRTVTIENHPNISGAHASIHPCQHGAVMKTIVKNLTREGDGGDGESGGEGSGGPSVEMYLFIFLKFVSSMIPTINYDFTMDVSAST 311
The following BLAST results are available for this feature:
BLAST of NO21G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002295882.14.400e-4041.13autophagocytosis protein-like protein, partial [Th... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00480NO21G00480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00480.1NO21G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00480.1.cds1NO21G00480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00480.1.cds2NO21G00480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00480.1 ID=NO21G00480.1|Name=NO21G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
ATGCTGCCGCGGAGGGAGGGAAAGGGGGAGGGGGCGGCGGGGGAGAAGGA
GGAGGGAGGGAATGGAGTGTTGTTGGGAGGGGTGGGAAGTACACTCAAGG
TCGTAGACGGACATTTCGCACTCAAGGAGCAGGAAGGGAAAGAGGGCGAG
GTGCCGAGGGAGGGAGGGGTTGAGGGTGAGGGGTCCGACGAGGGGTATGC
GGACATGGCTTCGTATGAAGAGGCCGGACTAGGTGGACAGGAAGGAGGGG
AGGAAGGGAGGGAGGGAGGGGAGGACGTGGCGATGTTACCGTCGGAGAGC
TTACCGTACATGAAGACGGAGGAGCCGCAGGCGTCGCTGGTCGCTTCAAG
GTCTTACGATATATCCATCACTTACGACAAGTACTACCAGACACCGCGGG
CCTGGCTTTTGGGCTATGACGAGGAAGGTCAGCCTCTGTCAGCCCCCGCT
CTCTTTGAAGATATTCAGCAGGATTATGCTCACCGCACCGTCACGATTGA
GACCCACCCCCACACCGGTGTGCCTCAAGCGTCCATCCACCCTTGCCAGC
ACGCCAATGTCATGAAGAATATTGTGCGGAATCTATCTCAGGGGAGGGAG
GGAGGAAGGGAGGGAGGGGGGCCACGCATGGACCAGTATTTGTTCATCTT
TTTGAAATTCTTGCAGAGCATGATTCCTACGATTGATTATGACTTCACGG
TGGAGGTGGACGTGGGGACAGGAGCCAGGGAGGGAGGAAAGGTGGAGGAC
GAGGGGATAGTAATGGTATTGGAGGAAATTATGGAGGGGTGA
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protein sequence of NO21G00480.1

>NO21G00480.1-protein ID=NO21G00480.1-protein|Name=NO21G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MLPRREGKGEGAAGEKEEGGNGVLLGGVGSTLKVVDGHFALKEQEGKEGE
VPREGGVEGEGSDEGYADMASYEEAGLGGQEGGEEGREGGEDVAMLPSES
LPYMKTEEPQASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPLSAPA
LFEDIQQDYAHRTVTIETHPHTGVPQASIHPCQHANVMKNIVRNLSQGRE
GGREGGGPRMDQYLFIFLKFLQSMIPTIDYDFTVEVDVGTGAREGGKVED
EGIVMVLEEIMEG*
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mRNA from alignment at chr21:167295..168280+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00480.1 ID=NO21G00480.1|Name=NO21G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=986bp|location=Sequence derived from alignment at chr21:167295..168280+ (Nannochloropsis oceanica)
ATGCTGCCGCGGAGGGAGGGAAAGGGGGAGGGGGCGGCGGGGGAGAAGGA
GGAGGGAGGGAATGGAGTGTTGTTGGGAGGGGTGGGAAGTACACTCAAGG
TCGTAGACGGACATTTCGCACTCAAGGAGCAGGAAGGGAAAGAGGGCGAG
GTGCCGAGGGAGGGAGGGGTTGAGGGTGAGGGGTCCGACGAGGGGTATGC
GGACATGGCTTCGTATGAAGAGGCCGGACTAGGTGGACAGGAAGGAGGGG
AGGAAGGGAGGGAGGGAGGGGAGGACGTGGCGATGTTACCGTCGGAGAGC
TTACCGTACATGAAGACGGAGGAGCCGCAGGCGTCGCTGGTCGCTTCAAG
GTCTTACGATATATCCATCACTTACGACAAGTACTACCAGACACCGCGGG
CCTGGCTTTTGGGCTATGACGAGGTAATCTTTCCCTCTTACCCCATTTTG
AGGACTAGGGCGAGTTGTGCTGTATTTCTATCTGAAATCGATTTATTTAT
TTATTTTTCACTTGAAACGTGTTTAAATTAGGCAGTGCATTTATTTATTT
ATTCCTACCACAAATAATCTTATTACCCGCCATCCTGTATTACCCGCCAT
CCTGTGCATATTAATAGGAAGGTCAGCCTCTGTCAGCCCCCGCTCTCTTT
GAAGATATTCAGCAGGATTATGCTCACCGCACCGTCACGATTGAGACCCA
CCCCCACACCGGTGTGCCTCAAGCGTCCATCCACCCTTGCCAGCACGCCA
ATGTCATGAAGAATATTGTGCGGAATCTATCTCAGGGGAGGGAGGGAGGA
AGGGAGGGAGGGGGGCCACGCATGGACCAGTATTTGTTCATCTTTTTGAA
ATTCTTGCAGAGCATGATTCCTACGATTGATTATGACTTCACGGTGGAGG
TGGACGTGGGGACAGGAGCCAGGGAGGGAGGAAAGGTGGAGGACGAGGGG
ATAGTAATGGTATTGGAGGAAATTATGGAGGGGTGA
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Coding sequence (CDS) from alignment at chr21:167295..168280+

>NO21G00480.1 ID=NO21G00480.1|Name=NO21G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr21:167295..168280+ (Nannochloropsis oceanica)
ATGCTGCCGCGGAGGGAGGGAAAGGGGGAGGGGGCGGCGGGGGAGAAGGA
GGAGGGAGGGAATGGAGTGTTGTTGGGAGGGGTGGGAAGTACACTCAAGG
TCGTAGACGGACATTTCGCACTCAAGGAGCAGGAAGGGAAAGAGGGCGAG
GTGCCGAGGGAGGGAGGGGTTGAGGGTGAGGGGTCCGACGAGGGGTATGC
GGACATGGCTTCGTATGAAGAGGCCGGACTAGGTGGACAGGAAGGAGGGG
AGGAAGGGAGGGAGGGAGGGGAGGACGTGGCGATGTTACCGTCGGAGAGC
TTACCGTACATGAAGACGGAGGAGCCGCAGGCGTCGCTGGTCGCTTCAAG
GTCTTACGATATATCCATCACTTACGACAAGTACTACCAGACACCGCGGG
CCTGGCTTTTGGGCTATGACGAGGAAGGTCAGCCTCTGTCAGCCCCCGCT
CTCTTTGAAGATATTCAGCAGGATTATGCTCACCGCACCGTCACGATTGA
GACCCACCCCCACACCGGTGTGCCTCAAGCGTCCATCCACCCTTGCCAGC
ACGCCAATGTCATGAAGAATATTGTGCGGAATCTATCTCAGGGGAGGGAG
GGAGGAAGGGAGGGAGGGGGGCCACGCATGGACCAGTATTTGTTCATCTT
TTTGAAATTCTTGCAGAGCATGATTCCTACGATTGATTATGACTTCACGG
TGGAGGTGGACGTGGGGACAGGAGCCAGGGAGGGAGGAAAGGTGGAGGAC
GAGGGGATAGTAATGGTATTGGAGGAAATTATGGAGGGGTGA
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Synonyms
Publications