NO21G00030, NO21G00030 (gene) Nannochloropsis oceanica

Overview
NameNO21G00030
Unique NameNO21G00030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1348
Alignment locationchr21:8301..9648 +

Link to JBrowse

Properties
Property NameValue
DescriptionMitochondrial protein translocase family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:8301..9648 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035427Tim10-like_dom_sf
IPR004217Tim10/DDP_fam_Znf
Vocabulary: Biological Process
TermDefinition
GO:0072321chaperone-mediated protein transport
GO:0015031protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005758mitochondrial intermembrane space
GO:0005739mitochondrion
Homology
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BLAST of NO21G00030 vs. NCBI_GenBank
Match: EWM20661.1 (mitochondrial protein translocase family [Nannochloropsis gaditana])

HSP 1 Score: 99.8 bits (247), Expect = 5.900e-18
Identity = 67/139 (48.20%), Postives = 73/139 (52.52%), Query Frame = 0 
Query:    1 MSWFGLGGSKKEEVPESNYDF--TASGFEESVGGXXXXXXXXXXXXXG--------------------------------------SGGNMGQLEELVMAEQQKALVQSVIARLTEMAFENCVAKPASALSSSEQGCIK 100
            MSWFG GG KKE+  ES+YDF  +ASGFEES GG             G                                        G  GQLEELVMAEQQKALVQSVIARLTEMAFE C+ KPAS+LSS EQ CI+
Sbjct:    1 MSWFGFGG-KKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMGVTTMHSIVNSNEVLLEILGGIIFLLKDVECLRTTNVRLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQ 138
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BLAST of NO21G00030 vs. NCBI_GenBank
Match: XP_005853348.1 (mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526] >XP_005855610.1 mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526] >EKU20741.1 mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526] >EKU23012.1 mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.1 bits (196), Expect = 4.800e-12
Identity = 64/103 (62.14%), Postives = 70/103 (67.96%), Query Frame = 0 
Query:    1 MSWFGLGGSKKEEVPESNYDFT----ASGFEESVGGXXXXXXXXXXXXXGSGGNMGQLEELVMAEQQKALVQSVIARLTEMAFENCVAKPASALSSSEQGCIK 100
            MSWFG GG KKE+  ES+YDF+              XXXXXXXXXXXXX           LVMAEQQKALVQSVIARLTEMAFE C+ KPAS+LSS EQ CI+
Sbjct:    1 MSWFGFGG-KKEDTQESSYDFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQ 102
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BLAST of NO21G00030 vs. NCBI_GenBank
Match: CBJ28576.1 (Mitochondrial protein import TIM8.13 complex subunit, Tim13 homolog [Ectocarpus siliculosus])

HSP 1 Score: 66.2 bits (160), Expect = 7.200e-8
Identity = 41/103 (39.81%), Postives = 55/103 (53.40%), Query Frame = 0 
Query:    1 MSWF-GLGGSKKEEVPESNYDFTASGFEESVGGXXXXXXXXXXXXXGSGG----NMGQLEELVMAEQQKALVQSVIARLTEMAFENCVAKPASALSSSEQGCI 99
            MSWF G    + E  PE  +    S FE S                G GG     MG L+  +  EQQKA +Q++++RLT++AF  C+ KP+S+LSSSEQ CI
Sbjct:    1 MSWFRGKKEPEPESTPEPTFSSDTSAFEGSTN------FASGPPSRGGGGATSAGMGDLQAAMQIEQQKAQMQAIVSRLTDLAFTKCIQKPSSSLSSSEQSCI 97
The following BLAST results are available for this feature:
BLAST of NO21G00030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM20661.15.900e-1848.20mitochondrial protein translocase family [Nannochl... [more]
XP_005853348.14.800e-1262.14mitochondrial protein translocase family [Nannochl... [more]
CBJ28576.17.200e-839.81Mitochondrial protein import TIM8.13 complex subun... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR093ncniR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR100ngnoR100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007573NSK007573Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00030.1NO21G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO21G00030.2NO21G00030.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613092gene_11040Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Tim13gene9747Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00030.1NO21G00030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO21G00030.2NO21G00030.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00030 ID=NO21G00030|Name=NO21G00030|organism=Nannochloropsis oceanica|type=gene|length=1348bp
CAGCGTCATAGTGCATGCAATACTGCACGCGACGCTAGCATTGGGTTCCC
CAAGAGTCGGACCGTTTGCCATGCTGTAATGCCTCTCCTTTCACCTCCTC
CATCCTTTTTTCGACAGGCGCCGAATGAGGCCCCTTTGCGGCGCAGCAAG
CAACAGTCGAGGCAAGCTCCTGTGTTCCTAACGATGATGATAAAACCAAG
CTCATGCACCATATCTCCCTCTCTTTAAGACTGCAGCACATTAAACAGCC
ATGTCCTGGTTCGGATTGGGTGGATCCAAGAAGGAGGAAGTGCCAGAGAG
CAACTATGACTTTACGGCGAGCGGCTTTGAGGAGAGCGTGGGCGGGGGAG
GGGGAGGGTATGATCCGTCGTTGGGAGGAGgtgagtgtgtgggccaaaga
aagggttgagaggatggggaaagggatagccaatatagttgggcatgtgc
gaaaaggaaaatgtaggtatggaggattgtggagggcaggggctgaagtg
cgagttgcgacggccggatagaagaaaaaatatcataggacacggcacca
gggggtttaaccttgcttgtgggaatcctgggccgcatatgagagagcaa
cgacgtacaggacatgacagcagaacgcccgactattggtccgcgctgct
tgatatatatatatatttatatttacataaatatataaactcggcaaatt
cggatatatatatatccgaattcgcttcttgcttctttccccttcctccc
tcatcgttccctcaattcctcttagGCGTGGGCAGTGGTGGGAATATGGG
GCAATTGGAGGAGCTCGTGATGGCGGAGCAGCAGAAAGCTTTGGTGCAGT
CCGTCATTGCCAGGTTGACTGAGATGGCCTTTGAGAATTGTGTTGCCAAG
CCTGCTTCTGCTCTGTCCAGTTCAGAGCAGGGCTGCATAAAGGTAAGGGG
GGAGGAAGGAGGGAGTGAGGGAGGCAAGAAGTGAGGAAGGAAGGAAGGGG
ATTTTTTTCATGTTATGAACTTCATAATGTCCACTAAATGCCTTTCCATC
ATTCTCATCAAGCGCCCGGAATCACAATGTCTGTACTTCTCCCTCCCTCC
CTCCCTTCCTCCCTCAGTTCGTCTTCTATGTGTCCATCGTCTCAAAGATT
TATAATCATCACACACATCCTTCCCCAATCACTCATCTCTCTCTCTCGCT
CTCTCACACCCTTCCTCCCTCGTTGAGGCGACGGTGGCCAAGTATCTGGA
CACGTCCGAGTTCGTCCTGGGCCGAGTCCAACGCTCGGCCCAACGGGGAC
AGAGCGGGGGGCACTAGGGCGGGCGGAAGGGAGGGGGGCAGGGAGGGG
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protein sequence of NO21G00030.1

>NO21G00030.1-protein ID=NO21G00030.1-protein|Name=NO21G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MSWFGLGGSKKEEVPESNYDFTASGFEESVGGGGGGYDPSLGGGVGSGGN
MGQLEELVMAEQQKALVQSVIARLTEMAFENCVAKPASALSSSEQGCIKA
TVAKYLDTSEFVLGRVQRSAQRGQSGGH*
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protein sequence of NO21G00030.2

>NO21G00030.2-protein ID=NO21G00030.2-protein|Name=NO21G00030.2|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MSWFGLGGSKKEEVPESNYDFTASGFEESVGGGGGGYDPSLGGGVGSGGN
MGQLEELVMAEQQKALVQSVIARLTEMAFENCVAKPASALSSSEQGCIKV
RGEEGGSEGGKK*
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Synonyms
Publications