NO21G00030.2, NO21G00030.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00030.2
Unique NameNO21G00030.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length953
Alignment locationchr21:8301..9648 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:8301..9648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00030.2 vs.
Match: XP_005853348.1 (mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526]; XP_005855610.1 mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526]; EKU20741.1 mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526]; EKU23012.1 mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 124.4 bits (311), Expect = 2.200e-25
Identity = 77/105 (73.33%), Postives = 85/105 (80.95%), Query Frame = 0 
Query:    1 MSWFGLGGSKKEEVPESNYDFT--ASGFEESVGGGGGGYDPSLGGG----VGSGGNMGQLEELVMAEQQKALVQSVIARLTEMAFENCVAKPASALSSSEQGCIK 100
            MSWFG GG KKE+  ES+YDF+  ASGFEES GGG G YD SLGGG    +G+GG  GQLEELVMAEQQKALVQSVIARLTEMAFE C+ KPAS+LSS EQ CI+
Sbjct:    1 MSWFGFGG-KKEDTQESSYDFSSSASGFEES-GGGVGAYDSSLGGGGMGGLGAGGG-GQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQ 102
The following BLAST results are available for this feature:
BLAST of NO21G00030.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853348.12.200e-2573.33mitochondrial protein translocase family [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00030NO21G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00030.2NO21G00030.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00030.2.cds1NO21G00030.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00030.2.cds2NO21G00030.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00030.2 ID=NO21G00030.2|Name=NO21G00030.2|organism=Nannochloropsis oceanica|type=mRNA|length=953bp
CAGCGTCATAGTGCATGCAATACTGCACGCGACGCTAGCATTGGGTTCCC
CAAGAGTCGGACCGTTTGCCATGCTGTAATGCCTCTCCTTTCACCTCCTC
CATCCTTTTTTCGACAGGCGCCGAATGAGGCCCCTTTGCGGCGCAGCAAG
CAACAGTCGAGGCAAGCTCCTGTGTTCCTAACGATGATGATAAAACCAAG
CTCATGCACCATATCTCCCTCTCTTTAAGACTGCAGCACATTAAACAGCC
ATGTCCTGGTTCGGATTGGGTGGATCCAAGAAGGAGGAAGTGCCAGAGAG
CAACTATGACTTTACGGCGAGCGGCTTTGAGGAGAGCGTGGGCGGGGGAG
GGGGAGGGTATGATCCGTCGTTGGGAGGAGGCGTGGGCAGTGGTGGGAAT
ATGGGGCAATTGGAGGAGCTCGTGATGGCGGAGCAGCAGAAAGCTTTGGT
GCAGTCCGTCATTGCCAGGTTGACTGAGATGGCCTTTGAGAATTGTGTTG
CCAAGCCTGCTTCTGCTCTGTCCAGTTCAGAGCAGGGCTGCATAAAGGTA
AGGGGGGAGGAAGGAGGGAGTGAGGGAGGCAAGAAGTGAGGAAGGAAGGA
AGGGGATTTTTTTCATGTTATGAACTTCATAATGTCCACTAAATGCCTTT
CCATCATTCTCATCAAGCGCCCGGAATCACAATGTCTGTACTTCTCCCTC
CCTCCCTCCCTTCCTCCCTCAGTTCGTCTTCTATGTGTCCATCGTCTCAA
AGATTTATAATCATCACACACATCCTTCCCCAATCACTCATCTCTCTCTC
TCGCTCTCTCACACCCTTCCTCCCTCGTTGAGGCGACGGTGGCCAAGTAT
CTGGACACGTCCGAGTTCGTCCTGGGCCGAGTCCAACGCTCGGCCCAACG
GGGACAGAGCGGGGGGCACTAGGGCGGGCGGAAGGGAGGGGGGCAGGGAG
GGG
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protein sequence of NO21G00030.2

>NO21G00030.2-protein ID=NO21G00030.2-protein|Name=NO21G00030.2|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MSWFGLGGSKKEEVPESNYDFTASGFEESVGGGGGGYDPSLGGGVGSGGN
MGQLEELVMAEQQKALVQSVIARLTEMAFENCVAKPASALSSSEQGCIKV
RGEEGGSEGGKK*
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mRNA from alignment at chr21:8301..9648+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00030.2 ID=NO21G00030.2|Name=NO21G00030.2|organism=Nannochloropsis oceanica|type=mRNA|length=1348bp|location=Sequence derived from alignment at chr21:8301..9648+ (Nannochloropsis oceanica)
CAGCGTCATAGTGCATGCAATACTGCACGCGACGCTAGCATTGGGTTCCC
CAAGAGTCGGACCGTTTGCCATGCTGTAATGCCTCTCCTTTCACCTCCTC
CATCCTTTTTTCGACAGGCGCCGAATGAGGCCCCTTTGCGGCGCAGCAAG
CAACAGTCGAGGCAAGCTCCTGTGTTCCTAACGATGATGATAAAACCAAG
CTCATGCACCATATCTCCCTCTCTTTAAGACTGCAGCACATTAAACAGCC
ATGTCCTGGTTCGGATTGGGTGGATCCAAGAAGGAGGAAGTGCCAGAGAG
CAACTATGACTTTACGGCGAGCGGCTTTGAGGAGAGCGTGGGCGGGGGAG
GGGGAGGGTATGATCCGTCGTTGGGAGGAGGTGAGTGTGTGGGCCAAAGA
AAGGGTTGAGAGGATGGGGAAAGGGATAGCCAATATAGTTGGGCATGTGC
GAAAAGGAAAATGTAGGTATGGAGGATTGTGGAGGGCAGGGGCTGAAGTG
CGAGTTGCGACGGCCGGATAGAAGAAAAAATATCATAGGACACGGCACCA
GGGGGTTTAACCTTGCTTGTGGGAATCCTGGGCCGCATATGAGAGAGCAA
CGACGTACAGGACATGACAGCAGAACGCCCGACTATTGGTCCGCGCTGCT
TGATATATATATATATTTATATTTACATAAATATATAAACTCGGCAAATT
CGGATATATATATATCCGAATTCGCTTCTTGCTTCTTTCCCCTTCCTCCC
TCATCGTTCCCTCAATTCCTCTTAGGCGTGGGCAGTGGTGGGAATATGGG
GCAATTGGAGGAGCTCGTGATGGCGGAGCAGCAGAAAGCTTTGGTGCAGT
CCGTCATTGCCAGGTTGACTGAGATGGCCTTTGAGAATTGTGTTGCCAAG
CCTGCTTCTGCTCTGTCCAGTTCAGAGCAGGGCTGCATAAAGGTAAGGGG
GGAGGAAGGAGGGAGTGAGGGAGGCAAGAAGTGAGGAAGGAAGGAAGGGG
ATTTTTTTCATGTTATGAACTTCATAATGTCCACTAAATGCCTTTCCATC
ATTCTCATCAAGCGCCCGGAATCACAATGTCTGTACTTCTCCCTCCCTCC
CTCCCTTCCTCCCTCAGTTCGTCTTCTATGTGTCCATCGTCTCAAAGATT
TATAATCATCACACACATCCTTCCCCAATCACTCATCTCTCTCTCTCGCT
CTCTCACACCCTTCCTCCCTCGTTGAGGCGACGGTGGCCAAGTATCTGGA
CACGTCCGAGTTCGTCCTGGGCCGAGTCCAACGCTCGGCCCAACGGGGAC
AGAGCGGGGGGCACTAGGGCGGGCGGAAGGGAGGGGGGCAGGGAGGGG
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Coding sequence (CDS) from alignment at chr21:8301..9648+

>NO21G00030.2 ID=NO21G00030.2|Name=NO21G00030.2|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at chr21:8301..9648+ (Nannochloropsis oceanica)
ATGTCCTGGTTCGGATTGGGTGGATCCAAGAAGGAGGAAGTGCCAGAGAG
CAACTATGACTTTACGGCGAGCGGCTTTGAGGAGAGCGTGGGCGGGGGAG
GGGGAGGGTATGATCCGTCGTTGGGAGGAGGCGTGGGCAGTGGTGGGAAT
ATGGGGCAATTGGAGGAGCTCGTGATGGCGGAGCAGCAGAAAGCTTTGGT
GCAGTCCGTCATTGCCAGGTTGACTGAGATGGCCTTTGAGAATTGTGTTG
CCAAGCCTGCTTCTGCTCTGTCCAGTTCAGAGCAGGGCTGCATAAAGGTA
AGGGGGGAGGAAGGAGGGAGTGAGGGAGGCAAGAAGTGA
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Synonyms
Publications