NO20G02000, NO20G02000 (gene) Nannochloropsis oceanica

Overview
NameNO20G02000
Unique NameNO20G02000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1800
Alignment locationchr20:591961..593760 -

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Properties
Property NameValue
DescriptionDNA polymerase subunit Cdc27
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:591961..593760 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
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BLAST of NO20G02000 vs. NCBI_GenBank
Match: EWM22044.1 (DNA polymerase subunit Cdc27 [Nannochloropsis gaditana])

HSP 1 Score: 248.8 bits (634), Expect = 4.200e-62
Identity = 207/565 (36.64%), Postives = 246/565 (43.54%), Query Frame = 0 
Query:    2 VLDLQQHEEDLNAWIFDERKVITARYLAHVLNVPTVEARRLLAAFYRRHRGKVLATFLLSGERHPANPSQSVTSNEVLLLPESRVKAEKDRLFARLDGVQLFSLHATPS-TKAEAGENN--GLGPGGARLWTEDLVLANELLDASSDAGESFRLNKLSGISCPHIIFSAKGV--------RRAPQPPAPSASAKXXXXXXXXXXXXXXXXXXXXXXAVSCRPKGKAMSVQNFFCKPTTAKNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGYPRKKSKGSEGDDR-EEELEEAVHIEPVSGAMDTFVQRSPSKPAAPGEKRTKKVLVQKSFMDEKGYFVTESVWEEQEVDESSPASTSPSKSKAPVKSEPAV 555
            +++LQ HEEDL+AWI DERKVIT+RYLA VLN+PT  ARRLLAAFYRRH+ +VLATFLL+GE+H  + SQS     VLLLPE RVKAEKD  F RL+GVQ+FSLHA P+ +K E+ + N  GLG GGA+LW EDL +A ELLDA+SDAGESFR NKLSGIS P I  S  G           A +P   +++ K                        S + KG+A+S QNFF +  TAK                                                           XXXXXXXXXX                                                                                                                                                         KG  RK   G +G +R EEE+ EAVHIE VSGAMDTFVQRSPSK A    KRTK+VLVQKSFMDEKGYFVTE+VWE+QEVDE  PA   P+ + A  K+ P++
Sbjct:    5 LVNLQHHEEDLSAWILDERKVITSRYLAQVLNIPTSSARRLLAAFYRRHKSEVLATFLLTGEQHVESRSQSSAGRGVLLLPECRVKAEKDHFFTRLEGVQIFSLHAKPNLSKKESEKKNESGLGQGGAKLWMEDLAMATELLDAASDAGESFRYNKLSGISSPEIFLSTAGAYSWRSLSNANASKPSVMASTGKDMKGANRSSTG-------------SVKGKGQAISAQNFFERDPTAKQR-------------------------SFIGADKNQSGPQVLQGKAAPGKTKDKGASATXXXXXXXXXXERAEGAVTGSSNSRLSTSLSPVKCRDAKVNPGPGNTPSLKGSKPKRKIAEEREQSDSAESSAGEEEFLPGEKTASDRWRDEERKAARELVERQADERQRKKGKHIPKEDAGEDGALSEDTEEEEGGETIATGKKSKGLKKRGGIPGEARKRGVKGERRKDQSGKKGGERDEEEIPEAVHIEAVSGAMDTFVQRSPSKDAPQDGKRTKRVLVQKSFMDEKGYFVTENVWEDQEVDE--PAGPPPAPASA-AKTMPSM 528
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BLAST of NO20G02000 vs. NCBI_GenBank
Match: CBN75331.1 (DNA-directed DNA polymerase delta 3 [Ectocarpus siliculosus])

HSP 1 Score: 68.6 bits (166), Expect = 7.800e-8
Identity = 46/156 (29.49%), Postives = 83/156 (53.21%), Query Frame = 0 
Query:    7 QHEEDLNAWIFDERKVITARYLAHVLNVPTVEARRLLAAFYRRH-RGKVLATFLLSGERHPANPSQSVTSNEVLLLPESRVKAEKDRLFARLDGVQLFSLHATPSTKAEAGENNGLGPGGARLWTEDLVLANELLDASSDAGESFRLNKLSGISCP 162
            Q+ ++L  W+ DE+KV+T R+LA VL+V    A+++L  F +R    KV AT+L+ G     +      + EV L+    + + +  L   +  V ++S+   P ++  A  +        +LW  DL    E+++ S++AG + R ++LSG+ CP
Sbjct:   15 QYLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVSATYLVVGR----SGIGGFGAVEVKLVSAEGLDSTRKAL-ETVTCVHVYSVQPAPCSQPAADMS-------TQLWATDLEHTKEMVEESTEAGANLRTHRLSGVRCP 158
The following BLAST results are available for this feature:
BLAST of NO20G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22044.14.200e-6236.64DNA polymerase subunit Cdc27 [Nannochloropsis gadi... [more]
CBN75331.17.800e-829.49DNA-directed DNA polymerase delta 3 [Ectocarpus si... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002739NSK002739Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02000.1NO20G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594959gene_6422Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100052g29gene8398Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02000.1NO20G02000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02000 ID=NO20G02000|Name=NO20G02000|organism=Nannochloropsis oceanica|type=gene|length=1800bp
ATGGTCCTAGATCTACAGCAACACGAGGAGGACTTAAATGCCTGGATATT
TGATGAGCGCAAGGTGATCACGGCCCGGTACCTGGCCCACGTTCTGAATG
TGCCCACGGTGGAAGCCCGTCGATTGCTGGCTGCCTTCTACCGTAGGCAT
AGAGGCAAGGTCCTTGCCACCTTCTTGCTAAGCGGCGAGCGACATCCCGC
CAACCCATCCCAGTCAGTAACCAGCAACGAGGTTTTGCTCCTACCCGAAA
GCCGGGTAAAGGCAGAGAAGGATCGTTTGTTCGCCCGCCTCGACGGAGTC
CAACTCTTCAGCCTACACGCCACGCCTTCGACCAAGGCCGAAGCCGGCGA
AAATAACGGCTTGGGTCCTGGTGGCGCCCGCCTGTGGACAGAAGACTTGG
TATTGGCAAACGAGCTGCTAGACGCATCTTCGGACGCCGGGGAAAGTTTC
CGCCTCAACAAGCTTAGCGGCATCTCATGCCCCCATATTATTTTTTCTGC
TAAGGGCGTCCGTCGCGCCCCTCAGCCTCCGGCTCCTTCTGCGTCTGCAA
AAGGCTGCAGTAGAGGTGCTAGTGCCAGCACCAGCGGCGAAAGCAACAGC
AGTAGTAACCGGGCTTCGGCTGTGTCATGTAGGCCGAAGGGTAAGGCTAT
GAGTGTCCAGAATTTCTTTTGCAAACCTACCACGGCGAAGAACGAGGAAG
CATCCGCCCCCAAGGCTCCTAAGAAGGAGGAAGCGGCAGCACCTACGGAA
GAAATGGAGGAGAAGAGTAAGATGGAAGATGAGGTAACGCAGACGGCAAG
CAGGAAGAGTAAGAAGGTCGTGCAAGAGGACGAGGAGAACGAGAATGAGG
AAGGAGTTGAAGCCCCGTCGCCGGCCAAAAAGGAGGCTGTTGCCTCTTCC
TCTCCCAAGCCCACCAAGAACAAGACAGAGTTACTGAAAGCTGCATCAAA
GGAAAATAAGGAACAGCAGGACAGTTGTGCGGCTGCGGCGAAGAAAGGGA
TGGTGGAAGAAGAGAAAGAAAAAGAAGAGGATGAGGATGGAGGGGAATCT
GCGGGCGAGGAGGAGTTCTTGCCAGGTGCGAAGACAGCGAGTGACAAGCG
GAGGGACAAGGAACGGAAGGCTGCCAGGGAGCAAGCTGAGAGAGAGGCGG
AAGGGAGAAGGAAGAAGAAGATGGCTGCCAAGAAGGATAGAGAGGGAGAG
AAGGATGATGACGGACGGGCTGGCATGGAGGAGAGTAGTGGTGATGAGGA
AGATGTCGAGGAGGAGAAGGAGACGAGGAAGGGTAAGGGGGAAGGCAAAG
GGAAGGGAAAAGGCTCTGGGGAAGGGAAGAAAAGAGCGGCCAAGAAAAGC
AATGCCAAGGGATATCCGCGGAAGAAGAGCAAGGGGAGTGAGGGGGACGA
CCGGGAGGAGGAGCTGGAGGAAGCAGTGCACATTGAGCCTGTCAGTGGTG
CCATGGACACTTTTGTTCAACGGTCGCCCAGCAAACCCGCGGCTCCGGGG
GAGAAACGCACTAAGAAGGTATTGGTGCAGAAGAGTTTCATGGACGAAAA
AGGTTACTTTGTCACGGAGAGCGTGTGGGAGGAGCAGGAGGTGGATGAGT
CGTCGCCTGCCTCCACCTCTCCCAGCAAGAGTAAGGCCCCTGTCAAGTCC
GAGCCGGCTGTGGCTTTGGGACAAAAGCGCAAGGCTGAGGAGGGCGGAGG
TGGAGATGGTGGTGGTGATGACAAGAAGAAGGAGGTCAAGGCGGCATCTG
CGAGGACGAAGCAGAAGAGCATGTTAAGTTTCTTTGGCAAGAGGAATTGA
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protein sequence of NO20G02000.1

>NO20G02000.1-protein ID=NO20G02000.1-protein|Name=NO20G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MVLDLQQHEEDLNAWIFDERKVITARYLAHVLNVPTVEARRLLAAFYRRH
RGKVLATFLLSGERHPANPSQSVTSNEVLLLPESRVKAEKDRLFARLDGV
QLFSLHATPSTKAEAGENNGLGPGGARLWTEDLVLANELLDASSDAGESF
RLNKLSGISCPHIIFSAKGVRRAPQPPAPSASAKGCSRGASASTSGESNS
SSNRASAVSCRPKGKAMSVQNFFCKPTTAKNEEASAPKAPKKEEAAAPTE
EMEEKSKMEDEVTQTASRKSKKVVQEDEENENEEGVEAPSPAKKEAVASS
SPKPTKNKTELLKAASKENKEQQDSCAAAAKKGMVEEEKEKEEDEDGGES
AGEEEFLPGAKTASDKRRDKERKAAREQAEREAEGRRKKKMAAKKDREGE
KDDDGRAGMEESSGDEEDVEEEKETRKGKGEGKGKGKGSGEGKKRAAKKS
NAKGYPRKKSKGSEGDDREEELEEAVHIEPVSGAMDTFVQRSPSKPAAPG
EKRTKKVLVQKSFMDEKGYFVTESVWEEQEVDESSPASTSPSKSKAPVKS
EPAVALGQKRKAEEGGGGDGGGDDKKKEVKAASARTKQKSMLSFFGKRN*
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Synonyms
Publications