NO20G02000.1, NO20G02000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02000.1
Unique NameNO20G02000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1800
Alignment locationchr20:591961..593760 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:591961..593760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO20G02000.1 vs.
Match: EWM22044.1 (DNA polymerase subunit Cdc27 [Nannochloropsis gaditana])

HSP 1 Score: 337.4 bits (864), Expect = 8.900e-89
Identity = 266/558 (47.67%), Postives = 347/558 (62.19%), Query Frame = 0 
Query:    2 VLDLQQHEEDLNAWIFDERKVITARYLAHVLNVPTVEARRLLAAFYRRHRGKVLATFLLSGERHPANPSQSVTSNEVLLLPESRVKAEKDRLFARLDGVQLFSLHATPS-TKAEAGENN--GLGPGGARLWTEDLVLANELLDASSDAGESFRLNKLSGISCPHIIFSAKGVRRAPQPPAPSASAKGCSRGASASTSGESNSSSNRASAVSCRPKGKAMSVQNFFCKPTTAKNEEASAPKAPKKEEAAAPTEEMEEKSKMEDEVTQTASRKSKKVVQEDEENENEEGVEAPSPAKKEAVASSSPKPTKNKTELLKAASKENKEQQDSCAAAAKKGMVEEEKEKEEDEDGGESAGEEEFLPGAKTASDKRRDKERKAAREQAEREAEGRRKKKMAAKKDREGEKDDDGRAG-MEESSGDEEDVEEEKETRKGKGEGKGKGKGSGEGKKRAAKKSNAKGYPRKKSKGSEGDDR-EEELEEAVHIEPVSGAMDTFVQRSPSKPAAPGEKRTKKVLVQKSFMDEKGYFVTESVWEEQEVDESSPASTSPSKSKAPVKSEPAV 555
            +++LQ HEEDL+AWI DERKVIT+RYLA VLN+PT  ARRLLAAFYRRH+ +VLATFLL+GE+H  + SQS     VLLLPE RVKAEKD  F RL+GVQ+FSLHA P+ +K E+ + N  GLG GGA+LW EDL +A ELLDA+SDAGESFR NKLSGIS P I  S  G          S S    S+ +  +++G+    +NR+S  S + KG+A+S QNFF +  TAK  + S   A K +      +      K +D+   +A++ ++ +        +EE  E        +  S+S  P K +       +K N    ++ +    K   +  +E+E+ +    SAGEEEFLPG KTASD+ RD+ERKAARE  ER+A+ R++KK      +   K+D G  G + E + +EE  E     +K KG  K +G   GE +KR  K     G  RK   G +G +R EEE+ EAVHIE VSGAMDTFVQRSPSK A    KRTK+VLVQKSFMDEKGYFVTE+VWE+QEVDE  PA   P+ + A  K+ P++
Sbjct:    5 LVNLQHHEEDLSAWILDERKVITSRYLAQVLNIPTSSARRLLAAFYRRHKSEVLATFLLTGEQHVESRSQSSAGRGVLLLPECRVKAEKDHFFTRLEGVQIFSLHAKPNLSKKESEKKNESGLGQGGAKLWMEDLAMATELLDAASDAGESFRYNKLSGISSPEIFLSTAGAYSWR-----SLSNANASKPSVMASTGKDMKGANRSSTGSVKGKGQAISAQNFFERDPTAK--QRSFIGADKNQSGPQVLQGKAAPGKTKDKGA-SATKGAESMAG------SEERAEGAVTGSSNSRLSTSLSPVKCRD------AKVNPGPGNTPSLKGSKPKRKIAEEREQSDSAESSAGEEEFLPGEKTASDRWRDEERKAARELVERQADERQRKK-----GKHIPKEDAGEDGALSEDTEEEEGGETIATGKKSKGLKK-RGGIPGEARKRGVK-----GERRKDQSGKKGGERDEEEIPEAVHIEAVSGAMDTFVQRSPSKDAPQDGKRTKRVLVQKSFMDEKGYFVTENVWEDQEVDE--PAGPPPAPASA-AKTMPSM 528
The following BLAST results are available for this feature:
BLAST of NO20G02000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22044.18.900e-8947.67DNA polymerase subunit Cdc27 [Nannochloropsis gadi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02000NO20G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02000.1NO20G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02000.1.cds1NO20G02000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02000.1 ID=NO20G02000.1|Name=NO20G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp
ATGGTCCTAGATCTACAGCAACACGAGGAGGACTTAAATGCCTGGATATT
TGATGAGCGCAAGGTGATCACGGCCCGGTACCTGGCCCACGTTCTGAATG
TGCCCACGGTGGAAGCCCGTCGATTGCTGGCTGCCTTCTACCGTAGGCAT
AGAGGCAAGGTCCTTGCCACCTTCTTGCTAAGCGGCGAGCGACATCCCGC
CAACCCATCCCAGTCAGTAACCAGCAACGAGGTTTTGCTCCTACCCGAAA
GCCGGGTAAAGGCAGAGAAGGATCGTTTGTTCGCCCGCCTCGACGGAGTC
CAACTCTTCAGCCTACACGCCACGCCTTCGACCAAGGCCGAAGCCGGCGA
AAATAACGGCTTGGGTCCTGGTGGCGCCCGCCTGTGGACAGAAGACTTGG
TATTGGCAAACGAGCTGCTAGACGCATCTTCGGACGCCGGGGAAAGTTTC
CGCCTCAACAAGCTTAGCGGCATCTCATGCCCCCATATTATTTTTTCTGC
TAAGGGCGTCCGTCGCGCCCCTCAGCCTCCGGCTCCTTCTGCGTCTGCAA
AAGGCTGCAGTAGAGGTGCTAGTGCCAGCACCAGCGGCGAAAGCAACAGC
AGTAGTAACCGGGCTTCGGCTGTGTCATGTAGGCCGAAGGGTAAGGCTAT
GAGTGTCCAGAATTTCTTTTGCAAACCTACCACGGCGAAGAACGAGGAAG
CATCCGCCCCCAAGGCTCCTAAGAAGGAGGAAGCGGCAGCACCTACGGAA
GAAATGGAGGAGAAGAGTAAGATGGAAGATGAGGTAACGCAGACGGCAAG
CAGGAAGAGTAAGAAGGTCGTGCAAGAGGACGAGGAGAACGAGAATGAGG
AAGGAGTTGAAGCCCCGTCGCCGGCCAAAAAGGAGGCTGTTGCCTCTTCC
TCTCCCAAGCCCACCAAGAACAAGACAGAGTTACTGAAAGCTGCATCAAA
GGAAAATAAGGAACAGCAGGACAGTTGTGCGGCTGCGGCGAAGAAAGGGA
TGGTGGAAGAAGAGAAAGAAAAAGAAGAGGATGAGGATGGAGGGGAATCT
GCGGGCGAGGAGGAGTTCTTGCCAGGTGCGAAGACAGCGAGTGACAAGCG
GAGGGACAAGGAACGGAAGGCTGCCAGGGAGCAAGCTGAGAGAGAGGCGG
AAGGGAGAAGGAAGAAGAAGATGGCTGCCAAGAAGGATAGAGAGGGAGAG
AAGGATGATGACGGACGGGCTGGCATGGAGGAGAGTAGTGGTGATGAGGA
AGATGTCGAGGAGGAGAAGGAGACGAGGAAGGGTAAGGGGGAAGGCAAAG
GGAAGGGAAAAGGCTCTGGGGAAGGGAAGAAAAGAGCGGCCAAGAAAAGC
AATGCCAAGGGATATCCGCGGAAGAAGAGCAAGGGGAGTGAGGGGGACGA
CCGGGAGGAGGAGCTGGAGGAAGCAGTGCACATTGAGCCTGTCAGTGGTG
CCATGGACACTTTTGTTCAACGGTCGCCCAGCAAACCCGCGGCTCCGGGG
GAGAAACGCACTAAGAAGGTATTGGTGCAGAAGAGTTTCATGGACGAAAA
AGGTTACTTTGTCACGGAGAGCGTGTGGGAGGAGCAGGAGGTGGATGAGT
CGTCGCCTGCCTCCACCTCTCCCAGCAAGAGTAAGGCCCCTGTCAAGTCC
GAGCCGGCTGTGGCTTTGGGACAAAAGCGCAAGGCTGAGGAGGGCGGAGG
TGGAGATGGTGGTGGTGATGACAAGAAGAAGGAGGTCAAGGCGGCATCTG
CGAGGACGAAGCAGAAGAGCATGTTAAGTTTCTTTGGCAAGAGGAATTGA
back to top

protein sequence of NO20G02000.1

>NO20G02000.1-protein ID=NO20G02000.1-protein|Name=NO20G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MVLDLQQHEEDLNAWIFDERKVITARYLAHVLNVPTVEARRLLAAFYRRH
RGKVLATFLLSGERHPANPSQSVTSNEVLLLPESRVKAEKDRLFARLDGV
QLFSLHATPSTKAEAGENNGLGPGGARLWTEDLVLANELLDASSDAGESF
RLNKLSGISCPHIIFSAKGVRRAPQPPAPSASAKGCSRGASASTSGESNS
SSNRASAVSCRPKGKAMSVQNFFCKPTTAKNEEASAPKAPKKEEAAAPTE
EMEEKSKMEDEVTQTASRKSKKVVQEDEENENEEGVEAPSPAKKEAVASS
SPKPTKNKTELLKAASKENKEQQDSCAAAAKKGMVEEEKEKEEDEDGGES
AGEEEFLPGAKTASDKRRDKERKAAREQAEREAEGRRKKKMAAKKDREGE
KDDDGRAGMEESSGDEEDVEEEKETRKGKGEGKGKGKGSGEGKKRAAKKS
NAKGYPRKKSKGSEGDDREEELEEAVHIEPVSGAMDTFVQRSPSKPAAPG
EKRTKKVLVQKSFMDEKGYFVTESVWEEQEVDESSPASTSPSKSKAPVKS
EPAVALGQKRKAEEGGGGDGGGDDKKKEVKAASARTKQKSMLSFFGKRN*
back to top

mRNA from alignment at chr20:591961..593760-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02000.1 ID=NO20G02000.1|Name=NO20G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp|location=Sequence derived from alignment at chr20:591961..593760- (Nannochloropsis oceanica)
ATGGTCCTAGATCTACAGCAACACGAGGAGGACTTAAATGCCTGGATATT
TGATGAGCGCAAGGTGATCACGGCCCGGTACCTGGCCCACGTTCTGAATG
TGCCCACGGTGGAAGCCCGTCGATTGCTGGCTGCCTTCTACCGTAGGCAT
AGAGGCAAGGTCCTTGCCACCTTCTTGCTAAGCGGCGAGCGACATCCCGC
CAACCCATCCCAGTCAGTAACCAGCAACGAGGTTTTGCTCCTACCCGAAA
GCCGGGTAAAGGCAGAGAAGGATCGTTTGTTCGCCCGCCTCGACGGAGTC
CAACTCTTCAGCCTACACGCCACGCCTTCGACCAAGGCCGAAGCCGGCGA
AAATAACGGCTTGGGTCCTGGTGGCGCCCGCCTGTGGACAGAAGACTTGG
TATTGGCAAACGAGCTGCTAGACGCATCTTCGGACGCCGGGGAAAGTTTC
CGCCTCAACAAGCTTAGCGGCATCTCATGCCCCCATATTATTTTTTCTGC
TAAGGGCGTCCGTCGCGCCCCTCAGCCTCCGGCTCCTTCTGCGTCTGCAA
AAGGCTGCAGTAGAGGTGCTAGTGCCAGCACCAGCGGCGAAAGCAACAGC
AGTAGTAACCGGGCTTCGGCTGTGTCATGTAGGCCGAAGGGTAAGGCTAT
GAGTGTCCAGAATTTCTTTTGCAAACCTACCACGGCGAAGAACGAGGAAG
CATCCGCCCCCAAGGCTCCTAAGAAGGAGGAAGCGGCAGCACCTACGGAA
GAAATGGAGGAGAAGAGTAAGATGGAAGATGAGGTAACGCAGACGGCAAG
CAGGAAGAGTAAGAAGGTCGTGCAAGAGGACGAGGAGAACGAGAATGAGG
AAGGAGTTGAAGCCCCGTCGCCGGCCAAAAAGGAGGCTGTTGCCTCTTCC
TCTCCCAAGCCCACCAAGAACAAGACAGAGTTACTGAAAGCTGCATCAAA
GGAAAATAAGGAACAGCAGGACAGTTGTGCGGCTGCGGCGAAGAAAGGGA
TGGTGGAAGAAGAGAAAGAAAAAGAAGAGGATGAGGATGGAGGGGAATCT
GCGGGCGAGGAGGAGTTCTTGCCAGGTGCGAAGACAGCGAGTGACAAGCG
GAGGGACAAGGAACGGAAGGCTGCCAGGGAGCAAGCTGAGAGAGAGGCGG
AAGGGAGAAGGAAGAAGAAGATGGCTGCCAAGAAGGATAGAGAGGGAGAG
AAGGATGATGACGGACGGGCTGGCATGGAGGAGAGTAGTGGTGATGAGGA
AGATGTCGAGGAGGAGAAGGAGACGAGGAAGGGTAAGGGGGAAGGCAAAG
GGAAGGGAAAAGGCTCTGGGGAAGGGAAGAAAAGAGCGGCCAAGAAAAGC
AATGCCAAGGGATATCCGCGGAAGAAGAGCAAGGGGAGTGAGGGGGACGA
CCGGGAGGAGGAGCTGGAGGAAGCAGTGCACATTGAGCCTGTCAGTGGTG
CCATGGACACTTTTGTTCAACGGTCGCCCAGCAAACCCGCGGCTCCGGGG
GAGAAACGCACTAAGAAGGTATTGGTGCAGAAGAGTTTCATGGACGAAAA
AGGTTACTTTGTCACGGAGAGCGTGTGGGAGGAGCAGGAGGTGGATGAGT
CGTCGCCTGCCTCCACCTCTCCCAGCAAGAGTAAGGCCCCTGTCAAGTCC
GAGCCGGCTGTGGCTTTGGGACAAAAGCGCAAGGCTGAGGAGGGCGGAGG
TGGAGATGGTGGTGGTGATGACAAGAAGAAGGAGGTCAAGGCGGCATCTG
CGAGGACGAAGCAGAAGAGCATGTTAAGTTTCTTTGGCAAGAGGAATTGA
back to top

Coding sequence (CDS) from alignment at chr20:591961..593760-

>NO20G02000.1 ID=NO20G02000.1|Name=NO20G02000.1|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at chr20:591961..593760- (Nannochloropsis oceanica)
ATGGTCCTAGATCTACAGCAACACGAGGAGGACTTAAATGCCTGGATATT
TGATGAGCGCAAGGTGATCACGGCCCGGTACCTGGCCCACGTTCTGAATG
TGCCCACGGTGGAAGCCCGTCGATTGCTGGCTGCCTTCTACCGTAGGCAT
AGAGGCAAGGTCCTTGCCACCTTCTTGCTAAGCGGCGAGCGACATCCCGC
CAACCCATCCCAGTCAGTAACCAGCAACGAGGTTTTGCTCCTACCCGAAA
GCCGGGTAAAGGCAGAGAAGGATCGTTTGTTCGCCCGCCTCGACGGAGTC
CAACTCTTCAGCCTACACGCCACGCCTTCGACCAAGGCCGAAGCCGGCGA
AAATAACGGCTTGGGTCCTGGTGGCGCCCGCCTGTGGACAGAAGACTTGG
TATTGGCAAACGAGCTGCTAGACGCATCTTCGGACGCCGGGGAAAGTTTC
CGCCTCAACAAGCTTAGCGGCATCTCATGCCCCCATATTATTTTTTCTGC
TAAGGGCGTCCGTCGCGCCCCTCAGCCTCCGGCTCCTTCTGCGTCTGCAA
AAGGCTGCAGTAGAGGTGCTAGTGCCAGCACCAGCGGCGAAAGCAACAGC
AGTAGTAACCGGGCTTCGGCTGTGTCATGTAGGCCGAAGGGTAAGGCTAT
GAGTGTCCAGAATTTCTTTTGCAAACCTACCACGGCGAAGAACGAGGAAG
CATCCGCCCCCAAGGCTCCTAAGAAGGAGGAAGCGGCAGCACCTACGGAA
GAAATGGAGGAGAAGAGTAAGATGGAAGATGAGGTAACGCAGACGGCAAG
CAGGAAGAGTAAGAAGGTCGTGCAAGAGGACGAGGAGAACGAGAATGAGG
AAGGAGTTGAAGCCCCGTCGCCGGCCAAAAAGGAGGCTGTTGCCTCTTCC
TCTCCCAAGCCCACCAAGAACAAGACAGAGTTACTGAAAGCTGCATCAAA
GGAAAATAAGGAACAGCAGGACAGTTGTGCGGCTGCGGCGAAGAAAGGGA
TGGTGGAAGAAGAGAAAGAAAAAGAAGAGGATGAGGATGGAGGGGAATCT
GCGGGCGAGGAGGAGTTCTTGCCAGGTGCGAAGACAGCGAGTGACAAGCG
GAGGGACAAGGAACGGAAGGCTGCCAGGGAGCAAGCTGAGAGAGAGGCGG
AAGGGAGAAGGAAGAAGAAGATGGCTGCCAAGAAGGATAGAGAGGGAGAG
AAGGATGATGACGGACGGGCTGGCATGGAGGAGAGTAGTGGTGATGAGGA
AGATGTCGAGGAGGAGAAGGAGACGAGGAAGGGTAAGGGGGAAGGCAAAG
GGAAGGGAAAAGGCTCTGGGGAAGGGAAGAAAAGAGCGGCCAAGAAAAGC
AATGCCAAGGGATATCCGCGGAAGAAGAGCAAGGGGAGTGAGGGGGACGA
CCGGGAGGAGGAGCTGGAGGAAGCAGTGCACATTGAGCCTGTCAGTGGTG
CCATGGACACTTTTGTTCAACGGTCGCCCAGCAAACCCGCGGCTCCGGGG
GAGAAACGCACTAAGAAGGTATTGGTGCAGAAGAGTTTCATGGACGAAAA
AGGTTACTTTGTCACGGAGAGCGTGTGGGAGGAGCAGGAGGTGGATGAGT
CGTCGCCTGCCTCCACCTCTCCCAGCAAGAGTAAGGCCCCTGTCAAGTCC
GAGCCGGCTGTGGCTTTGGGACAAAAGCGCAAGGCTGAGGAGGGCGGAGG
TGGAGATGGTGGTGGTGATGACAAGAAGAAGGAGGTCAAGGCGGCATCTG
CGAGGACGAAGCAGAAGAGCATGTTAAGTTTCTTTGGCAAGAGGAATTGA
back to top
Synonyms
Publications