NO20G00680, NO20G00680 (gene) Nannochloropsis oceanica

Overview
NameNO20G00680
Unique NameNO20G00680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1692
Alignment locationchr20:229702..231393 +

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:229702..231393 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO20G00680 vs. NCBI_GenBank
Match: EWM22183.1 (hypothetical protein Naga_100645g1 [Nannochloropsis gaditana])

HSP 1 Score: 236.9 bits (603), Expect = 1.500e-58
Identity = 380/562 (67.62%), Postives = 417/562 (74.20%), Query Frame = 0 
Query:    1 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----VREEYLHTVEDCMRSGDWFPLLEYYGPSLRGRGGGYSAWQQAQQMEQQRRGGERDHR 559
            MGF+P+TFIYNV MEAC+KA DLP  L LKRRM++ +VEFDVV+CNTLLNAFA+CG+WDEALSFLQRMP  Y XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                TLAL+PR+ LDPITFNLAMQVCEE GA  +AL +F RMQAEAGV+PNWITY IVLR+LT  G+W  V  L +TIE RL ++  XXXXXXXXXXXXXXXXXXXXXX                                +PSSDSFFSEAMRR V+   WD+   +F LAV  GAI        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          AVAAA E G   +V+R +TGLC  + G EGG+ G     REEYL  VE C RS +W  LL+++ P  R R GG +AWQ + +  Q+R  GE + R
Sbjct:  219 MGFRPTTFIYNVVMEACSKAKDLPRALALKRRMQSTQVEFDVVSCNTLLNAFAVCGRWDEALSFLQRMPGHYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLALQPRLPLDPITFNLAMQVCEEHGAETKALGLFHRMQAEAGVEPNWITYGIVLRILTRTGQWPQVQELFNTIEARLPSSSTXXXXXXXXXXXXXXXXXXXXXXYLP-----------------------------YPSSDSFFSEAMRRIVAAGAWDLAGRVFDLAVTCGAI-------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAAAVESGAQADVDRFVTGLCGIMQGTEGGRAGGRERWREEYLRAVEACGRSKEWSALLDFHVPGTRSR-GGQNAWQPSPRSAQERWSGEWEER 743
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BLAST of NO20G00680 vs. NCBI_GenBank
Match: XP_005854220.1 (hypothetical protein NGA_2016200, partial [Nannochloropsis gaditana CCMP526] >EKU22140.1 hypothetical protein NGA_2016200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 121.7 bits (304), Expect = 7.300e-24
Identity = 93/160 (58.13%), Postives = 106/160 (66.25%), Query Frame = 0 
Query:  244 TLALRPRVNLDPITFNLAMQVCEEQGAGQEALEVFERMQAEAGVDPNWITYTIVLRVLTDEGRWEDVSALLSTIEGRLTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLQHHPSSDSFFSEAMRRAVSMAEWDV 404
            TLAL+PR+ LDPITFNLAMQVCEE GA  +AL +F RMQAEAGV+PNWITY IVLR+LT  G+W  V  L +TIE RL ++  XXXXXXXXXXXXXXXXXXXXXX                                +PSSDSFFSEAMRR V+   WD+
Sbjct:  120 TLALQPRLPLDPITFNLAMQVCEEHGAETKALGLFHRMQAEAGVEPNWITYGIVLRILTRTGQWPQVQELFNTIEARLPSSSTXXXXXXXXXXXXXXXXXXXXXXYLP-----------------------------YPSSDSFFSEAMRRIVAAGAWDL 250
The following BLAST results are available for this feature:
BLAST of NO20G00680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22183.11.500e-5867.62hypothetical protein Naga_100645g1 [Nannochloropsi... [more]
XP_005854220.17.300e-2458.13hypothetical protein NGA_2016200, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00680.1NO20G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00680.1NO20G00680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00680 ID=NO20G00680|Name=NO20G00680|organism=Nannochloropsis oceanica|type=gene|length=1692bp
ATGGGGTTTCAACCGTCGACGTTTATCTACAACGTAGCCATGGAGGCCTG
CACTAAGGCGGGAGACCTCCCGGGAGTGCTGGGCTTGAAACGTCGGATGC
GAACGGCCAAGGTGGAATTTGACGTCGTTACGTGCAATACGTTATTGAAC
GCCTTTGCCATTTGTGGGAAGTGGGATGAAGCCCTATCTTTCCTCCAGCG
CATGCCGTCCCAGTACGGGGTTCGACCGAATCTAGTGAGTTGTAACACGG
CGCTCAAGGCGTGTGTGACGGGCCGTCGATGGCGCGAAGCCGTCGTGCTC
CTTAATAGCATGCAGGCCCAAAACCTCGCTCCTGACGCCGTTTCGTACCG
CACGGCTATGAACGCCTGCATCGAAGGGGGAGAAGCCAACCGGGCTTTGA
AGATCTTTGACCGCATGCGCGAGGACGGCCTTCCTTGGGACGTGCCCACT
TATAATGTGGTGCTGAAAGCCTGCGCAGAGAGCCACCAACCGGAGATGGC
TTGGGAGCTCTTCCAGCAGATGCAGAGCGCGGGGTTACCGGCCGAAGTGA
GGACATACACGACGTTAATGAATGGCTGGGTTGAGGCAGGGGAGTGCCAC
CGCGCAATCCAGGCGTTCCGGGAGATGAGGGCGGCGGGGCTGCAGCCGGA
TGTGTACGCATTGACGGTGGGAATCAAGGCTTGTGGCGTGTGTGGTCTGG
TAACGCAGGCGTTGGAGTTTGTGGAGGAAACGTTGGCGTTACGCCCGCGG
GTGAACCTGGATCCAATCACCTTTAATCTTGCCATGCAAGTCTGTGAAGA
GCAAGGGGCAGGGCAGGAAGCACTGGAGGTGTTTGAGCGGATGCAGGCAG
AGGCCGGCGTGGACCCGAATTGGATCACCTACACTATTGTTTTGAGGGTG
TTGACGGACGAGGGACGGTGGGAGGATGTCTCGGCGCTGCTTTCCACCAT
AGAGGGGCGCCTTACTGCTACCTCCTCCTCCTCCTCCTCTTCTTCTTCCT
CTTCGTCTTCCCCTTCCTCGTTGGCAGCGGTAGCATCAGCAGCAGCGACC
GCAGCCACAGCAGCCGCCGCCGCCGAAGCCGGGACAGTCACAGCAGCAGT
AGCAGGTCCAGCCGCTATTGCCTCTCCTTCCCTGCAGCACCACCCATCGT
CGGACTCCTTCTTTTCTGAGGCCATGCGCCGGGCGGTGTCTATGGCGGAA
TGGGACGTCGTGGCTCACATTTTCCACCTCGCCGTTCTGAGTGGGGCCAT
AGCCCCTCCTCCTTCCTCAATACTACCGCCAGCTGCTGAGGCTGAGCCAA
CTGCTAGTGAGGATGGTATTGCAGCTGCTGCTGGTGGTGGTGGTGGTGGG
GCTGCTGCCAGCACAGGGAGCAGAAAGCTGGACAAATATTTGTATGGGGG
GGCAGTGGCCGCTGCGAAGGAGAGAGGGGACGTAGAGGAGGTGGAGAGGC
TGATCACGGGGCTGTGCGAGGCGTTAAGCGGGATGGAGGGAGGAAAGGAG
GGCGTGAGAGAGGAGTACTTGCACACGGTGGAAGATTGTATGCGGAGTGG
AGACTGGTTCCCACTGTTGGAATACTACGGGCCAAGTTTGCGAGGGAGGG
GGGGAGGCTACAGTGCATGGCAGCAAGCGCAACAGATGGAGCAGCAGAGA
AGAGGGGGAGAGAGGGATCACAGGAGAAGAGGGAGGAGATGA
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protein sequence of NO20G00680.1

>NO20G00680.1-protein ID=NO20G00680.1-protein|Name=NO20G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=564bp
MGFQPSTFIYNVAMEACTKAGDLPGVLGLKRRMRTAKVEFDVVTCNTLLN
AFAICGKWDEALSFLQRMPSQYGVRPNLVSCNTALKACVTGRRWREAVVL
LNSMQAQNLAPDAVSYRTAMNACIEGGEANRALKIFDRMREDGLPWDVPT
YNVVLKACAESHQPEMAWELFQQMQSAGLPAEVRTYTTLMNGWVEAGECH
RAIQAFREMRAAGLQPDVYALTVGIKACGVCGLVTQALEFVEETLALRPR
VNLDPITFNLAMQVCEEQGAGQEALEVFERMQAEAGVDPNWITYTIVLRV
LTDEGRWEDVSALLSTIEGRLTATSSSSSSSSSSSSSPSSLAAVASAAAT
AATAAAAAEAGTVTAAVAGPAAIASPSLQHHPSSDSFFSEAMRRAVSMAE
WDVVAHIFHLAVLSGAIAPPPSSILPPAAEAEPTASEDGIAAAAGGGGGG
AAASTGSRKLDKYLYGGAVAAAKERGDVEEVERLITGLCEALSGMEGGKE
GVREEYLHTVEDCMRSGDWFPLLEYYGPSLRGRGGGYSAWQQAQQMEQQR
RGGERDHRRRGRR*
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Synonyms
Publications