NO20G00680.1, NO20G00680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00680.1
Unique NameNO20G00680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1692
Alignment locationchr20:229702..231393 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:229702..231393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00680.1 vs.
Match: EWM22183.1 (hypothetical protein Naga_100645g1 [Nannochloropsis gaditana])

HSP 1 Score: 642.9 bits (1657), Expect = 9.400e-181
Identity = 350/562 (62.28%), Postives = 408/562 (72.60%), Query Frame = 0 
Query:    1 MGFQPSTFIYNVAMEACTKAGDLPGVLGLKRRMRTAKVEFDVVTCNTLLNAFAICGKWDEALSFLQRMPSQYGVRPNLVSCNTALKACVTGRRWREAVVLLNSMQAQNLAPDAVSYRTAMNACIEGGEANRALKIFDRMREDGLPWDVPTYNVVLKACAESHQPEMAWELFQQMQSAGLPAEVRTYTTLMNGWVEAGECHRAIQAFREMRAAGLQPDVYALTVGIKACGVCGLVTQALEFVEETLALRPRVNLDPITFNLAMQVCEEQGAGQEALEVFERMQAEAGVDPNWITYTIVLRVLTDEGRWEDVSALLSTIEGRLTATSSSSSSSSSSSSSPSSLAAVASAAATAATAAAAAEAGTVTAAVAGPAAIASPSLQHHPSSDSFFSEAMRRAVSMAEWDVVAHIFHLAVLSGAIAPPPSSILPPAAEAEPTASEDGIAAAAGGGGGGAAASTGSRKLDKYLYGGAVAAAKERGDVEEVERLITGLCEALSGMEGGKEG----VREEYLHTVEDCMRSGDWFPLLEYYGPSLRGRGGGYSAWQQAQQMEQQRRGGERDHR 559
            MGF+P+TFIYNV MEAC+KA DLP  L LKRRM++ +VEFDVV+CNTLLNAFA+CG+WDEALSFLQRMP  Y V PNLVS NTALKACV GRRWREAV+LLNSM+AQ + PDAVSYRTAMNACIEGGEA RALKIFDRMREDG+PWDVPTYNVVLKACAE HQP+MAW LFQQMQ+AGL AEVRTYTT+MN WVEAGEC RAIQ F+EMRAAGLQPDVYA TVGIKACG CGLV  AL +VEETLAL+PR+ LDPITFNLAMQVCEE GA  +AL +F RMQAEAGV+PNWITY IVLR+LT  G+W  V  L +TIE RL        SSS++  +P SL     ++  ++                      S S   +PSSDSFFSEAMRR V+   WD+   +F LAV  GAIAPPP    PP+   EP+++     A   GGGG     +G R+L+K LYGGAVAAA E G   +V+R +TGLC  + G EGG+ G     REEYL  VE C RS +W  LL+++ P  R R GG +AWQ + +  Q+R  GE + R
Sbjct:  219 MGFRPTTFIYNVVMEACSKAKDLPRALALKRRMQSTQVEFDVVSCNTLLNAFAVCGRWDEALSFLQRMPGHYHVSPNLVSYNTALKACVVGRRWREAVMLLNSMRAQRVDPDAVSYRTAMNACIEGGEARRALKIFDRMREDGIPWDVPTYNVVLKACAEGHQPDMAWVLFQQMQAAGLVAEVRTYTTVMNAWVEAGECQRAIQTFQEMRAAGLQPDVYAWTVGIKACGACGLVETALAYVEETLALQPRLPLDPITFNLAMQVCEEHGAETKALGLFHRMQAEAGVEPNWITYGIVLRILTRTGQWPQVQELFNTIEARLP-------SSSTTPDTPPSLPPPLPSSVPSS----------------------SSSYLPYPSSDSFFSEAMRRIVAAGAWDLAGRVFDLAVTCGAIAPPP----PPS---EPSSTASSPPAEGAGGGGEGGGGSGHRRLEKCLYGGAVAAAVESGAQADVDRFVTGLCGIMQGTEGGRAGGRERWREEYLRAVEACGRSKEWSALLDFHVPGTRSR-GGQNAWQPSPRSAQERWSGEWEER 743
The following BLAST results are available for this feature:
BLAST of NO20G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22183.19.400e-18162.28hypothetical protein Naga_100645g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00680NO20G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00680.1NO20G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00680.1.cds1NO20G00680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00680.1 ID=NO20G00680.1|Name=NO20G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp
ATGGGGTTTCAACCGTCGACGTTTATCTACAACGTAGCCATGGAGGCCTG
CACTAAGGCGGGAGACCTCCCGGGAGTGCTGGGCTTGAAACGTCGGATGC
GAACGGCCAAGGTGGAATTTGACGTCGTTACGTGCAATACGTTATTGAAC
GCCTTTGCCATTTGTGGGAAGTGGGATGAAGCCCTATCTTTCCTCCAGCG
CATGCCGTCCCAGTACGGGGTTCGACCGAATCTAGTGAGTTGTAACACGG
CGCTCAAGGCGTGTGTGACGGGCCGTCGATGGCGCGAAGCCGTCGTGCTC
CTTAATAGCATGCAGGCCCAAAACCTCGCTCCTGACGCCGTTTCGTACCG
CACGGCTATGAACGCCTGCATCGAAGGGGGAGAAGCCAACCGGGCTTTGA
AGATCTTTGACCGCATGCGCGAGGACGGCCTTCCTTGGGACGTGCCCACT
TATAATGTGGTGCTGAAAGCCTGCGCAGAGAGCCACCAACCGGAGATGGC
TTGGGAGCTCTTCCAGCAGATGCAGAGCGCGGGGTTACCGGCCGAAGTGA
GGACATACACGACGTTAATGAATGGCTGGGTTGAGGCAGGGGAGTGCCAC
CGCGCAATCCAGGCGTTCCGGGAGATGAGGGCGGCGGGGCTGCAGCCGGA
TGTGTACGCATTGACGGTGGGAATCAAGGCTTGTGGCGTGTGTGGTCTGG
TAACGCAGGCGTTGGAGTTTGTGGAGGAAACGTTGGCGTTACGCCCGCGG
GTGAACCTGGATCCAATCACCTTTAATCTTGCCATGCAAGTCTGTGAAGA
GCAAGGGGCAGGGCAGGAAGCACTGGAGGTGTTTGAGCGGATGCAGGCAG
AGGCCGGCGTGGACCCGAATTGGATCACCTACACTATTGTTTTGAGGGTG
TTGACGGACGAGGGACGGTGGGAGGATGTCTCGGCGCTGCTTTCCACCAT
AGAGGGGCGCCTTACTGCTACCTCCTCCTCCTCCTCCTCTTCTTCTTCCT
CTTCGTCTTCCCCTTCCTCGTTGGCAGCGGTAGCATCAGCAGCAGCGACC
GCAGCCACAGCAGCCGCCGCCGCCGAAGCCGGGACAGTCACAGCAGCAGT
AGCAGGTCCAGCCGCTATTGCCTCTCCTTCCCTGCAGCACCACCCATCGT
CGGACTCCTTCTTTTCTGAGGCCATGCGCCGGGCGGTGTCTATGGCGGAA
TGGGACGTCGTGGCTCACATTTTCCACCTCGCCGTTCTGAGTGGGGCCAT
AGCCCCTCCTCCTTCCTCAATACTACCGCCAGCTGCTGAGGCTGAGCCAA
CTGCTAGTGAGGATGGTATTGCAGCTGCTGCTGGTGGTGGTGGTGGTGGG
GCTGCTGCCAGCACAGGGAGCAGAAAGCTGGACAAATATTTGTATGGGGG
GGCAGTGGCCGCTGCGAAGGAGAGAGGGGACGTAGAGGAGGTGGAGAGGC
TGATCACGGGGCTGTGCGAGGCGTTAAGCGGGATGGAGGGAGGAAAGGAG
GGCGTGAGAGAGGAGTACTTGCACACGGTGGAAGATTGTATGCGGAGTGG
AGACTGGTTCCCACTGTTGGAATACTACGGGCCAAGTTTGCGAGGGAGGG
GGGGAGGCTACAGTGCATGGCAGCAAGCGCAACAGATGGAGCAGCAGAGA
AGAGGGGGAGAGAGGGATCACAGGAGAAGAGGGAGGAGATGA
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protein sequence of NO20G00680.1

>NO20G00680.1-protein ID=NO20G00680.1-protein|Name=NO20G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=564bp
MGFQPSTFIYNVAMEACTKAGDLPGVLGLKRRMRTAKVEFDVVTCNTLLN
AFAICGKWDEALSFLQRMPSQYGVRPNLVSCNTALKACVTGRRWREAVVL
LNSMQAQNLAPDAVSYRTAMNACIEGGEANRALKIFDRMREDGLPWDVPT
YNVVLKACAESHQPEMAWELFQQMQSAGLPAEVRTYTTLMNGWVEAGECH
RAIQAFREMRAAGLQPDVYALTVGIKACGVCGLVTQALEFVEETLALRPR
VNLDPITFNLAMQVCEEQGAGQEALEVFERMQAEAGVDPNWITYTIVLRV
LTDEGRWEDVSALLSTIEGRLTATSSSSSSSSSSSSSPSSLAAVASAAAT
AATAAAAAEAGTVTAAVAGPAAIASPSLQHHPSSDSFFSEAMRRAVSMAE
WDVVAHIFHLAVLSGAIAPPPSSILPPAAEAEPTASEDGIAAAAGGGGGG
AAASTGSRKLDKYLYGGAVAAAKERGDVEEVERLITGLCEALSGMEGGKE
GVREEYLHTVEDCMRSGDWFPLLEYYGPSLRGRGGGYSAWQQAQQMEQQR
RGGERDHRRRGRR*
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mRNA from alignment at chr20:229702..231393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00680.1 ID=NO20G00680.1|Name=NO20G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp|location=Sequence derived from alignment at chr20:229702..231393+ (Nannochloropsis oceanica)
ATGGGGTTTCAACCGTCGACGTTTATCTACAACGTAGCCATGGAGGCCTG
CACTAAGGCGGGAGACCTCCCGGGAGTGCTGGGCTTGAAACGTCGGATGC
GAACGGCCAAGGTGGAATTTGACGTCGTTACGTGCAATACGTTATTGAAC
GCCTTTGCCATTTGTGGGAAGTGGGATGAAGCCCTATCTTTCCTCCAGCG
CATGCCGTCCCAGTACGGGGTTCGACCGAATCTAGTGAGTTGTAACACGG
CGCTCAAGGCGTGTGTGACGGGCCGTCGATGGCGCGAAGCCGTCGTGCTC
CTTAATAGCATGCAGGCCCAAAACCTCGCTCCTGACGCCGTTTCGTACCG
CACGGCTATGAACGCCTGCATCGAAGGGGGAGAAGCCAACCGGGCTTTGA
AGATCTTTGACCGCATGCGCGAGGACGGCCTTCCTTGGGACGTGCCCACT
TATAATGTGGTGCTGAAAGCCTGCGCAGAGAGCCACCAACCGGAGATGGC
TTGGGAGCTCTTCCAGCAGATGCAGAGCGCGGGGTTACCGGCCGAAGTGA
GGACATACACGACGTTAATGAATGGCTGGGTTGAGGCAGGGGAGTGCCAC
CGCGCAATCCAGGCGTTCCGGGAGATGAGGGCGGCGGGGCTGCAGCCGGA
TGTGTACGCATTGACGGTGGGAATCAAGGCTTGTGGCGTGTGTGGTCTGG
TAACGCAGGCGTTGGAGTTTGTGGAGGAAACGTTGGCGTTACGCCCGCGG
GTGAACCTGGATCCAATCACCTTTAATCTTGCCATGCAAGTCTGTGAAGA
GCAAGGGGCAGGGCAGGAAGCACTGGAGGTGTTTGAGCGGATGCAGGCAG
AGGCCGGCGTGGACCCGAATTGGATCACCTACACTATTGTTTTGAGGGTG
TTGACGGACGAGGGACGGTGGGAGGATGTCTCGGCGCTGCTTTCCACCAT
AGAGGGGCGCCTTACTGCTACCTCCTCCTCCTCCTCCTCTTCTTCTTCCT
CTTCGTCTTCCCCTTCCTCGTTGGCAGCGGTAGCATCAGCAGCAGCGACC
GCAGCCACAGCAGCCGCCGCCGCCGAAGCCGGGACAGTCACAGCAGCAGT
AGCAGGTCCAGCCGCTATTGCCTCTCCTTCCCTGCAGCACCACCCATCGT
CGGACTCCTTCTTTTCTGAGGCCATGCGCCGGGCGGTGTCTATGGCGGAA
TGGGACGTCGTGGCTCACATTTTCCACCTCGCCGTTCTGAGTGGGGCCAT
AGCCCCTCCTCCTTCCTCAATACTACCGCCAGCTGCTGAGGCTGAGCCAA
CTGCTAGTGAGGATGGTATTGCAGCTGCTGCTGGTGGTGGTGGTGGTGGG
GCTGCTGCCAGCACAGGGAGCAGAAAGCTGGACAAATATTTGTATGGGGG
GGCAGTGGCCGCTGCGAAGGAGAGAGGGGACGTAGAGGAGGTGGAGAGGC
TGATCACGGGGCTGTGCGAGGCGTTAAGCGGGATGGAGGGAGGAAAGGAG
GGCGTGAGAGAGGAGTACTTGCACACGGTGGAAGATTGTATGCGGAGTGG
AGACTGGTTCCCACTGTTGGAATACTACGGGCCAAGTTTGCGAGGGAGGG
GGGGAGGCTACAGTGCATGGCAGCAAGCGCAACAGATGGAGCAGCAGAGA
AGAGGGGGAGAGAGGGATCACAGGAGAAGAGGGAGGAGATGA
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Coding sequence (CDS) from alignment at chr20:229702..231393+

>NO20G00680.1 ID=NO20G00680.1|Name=NO20G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=1692bp|location=Sequence derived from alignment at chr20:229702..231393+ (Nannochloropsis oceanica)
ATGGGGTTTCAACCGTCGACGTTTATCTACAACGTAGCCATGGAGGCCTG
CACTAAGGCGGGAGACCTCCCGGGAGTGCTGGGCTTGAAACGTCGGATGC
GAACGGCCAAGGTGGAATTTGACGTCGTTACGTGCAATACGTTATTGAAC
GCCTTTGCCATTTGTGGGAAGTGGGATGAAGCCCTATCTTTCCTCCAGCG
CATGCCGTCCCAGTACGGGGTTCGACCGAATCTAGTGAGTTGTAACACGG
CGCTCAAGGCGTGTGTGACGGGCCGTCGATGGCGCGAAGCCGTCGTGCTC
CTTAATAGCATGCAGGCCCAAAACCTCGCTCCTGACGCCGTTTCGTACCG
CACGGCTATGAACGCCTGCATCGAAGGGGGAGAAGCCAACCGGGCTTTGA
AGATCTTTGACCGCATGCGCGAGGACGGCCTTCCTTGGGACGTGCCCACT
TATAATGTGGTGCTGAAAGCCTGCGCAGAGAGCCACCAACCGGAGATGGC
TTGGGAGCTCTTCCAGCAGATGCAGAGCGCGGGGTTACCGGCCGAAGTGA
GGACATACACGACGTTAATGAATGGCTGGGTTGAGGCAGGGGAGTGCCAC
CGCGCAATCCAGGCGTTCCGGGAGATGAGGGCGGCGGGGCTGCAGCCGGA
TGTGTACGCATTGACGGTGGGAATCAAGGCTTGTGGCGTGTGTGGTCTGG
TAACGCAGGCGTTGGAGTTTGTGGAGGAAACGTTGGCGTTACGCCCGCGG
GTGAACCTGGATCCAATCACCTTTAATCTTGCCATGCAAGTCTGTGAAGA
GCAAGGGGCAGGGCAGGAAGCACTGGAGGTGTTTGAGCGGATGCAGGCAG
AGGCCGGCGTGGACCCGAATTGGATCACCTACACTATTGTTTTGAGGGTG
TTGACGGACGAGGGACGGTGGGAGGATGTCTCGGCGCTGCTTTCCACCAT
AGAGGGGCGCCTTACTGCTACCTCCTCCTCCTCCTCCTCTTCTTCTTCCT
CTTCGTCTTCCCCTTCCTCGTTGGCAGCGGTAGCATCAGCAGCAGCGACC
GCAGCCACAGCAGCCGCCGCCGCCGAAGCCGGGACAGTCACAGCAGCAGT
AGCAGGTCCAGCCGCTATTGCCTCTCCTTCCCTGCAGCACCACCCATCGT
CGGACTCCTTCTTTTCTGAGGCCATGCGCCGGGCGGTGTCTATGGCGGAA
TGGGACGTCGTGGCTCACATTTTCCACCTCGCCGTTCTGAGTGGGGCCAT
AGCCCCTCCTCCTTCCTCAATACTACCGCCAGCTGCTGAGGCTGAGCCAA
CTGCTAGTGAGGATGGTATTGCAGCTGCTGCTGGTGGTGGTGGTGGTGGG
GCTGCTGCCAGCACAGGGAGCAGAAAGCTGGACAAATATTTGTATGGGGG
GGCAGTGGCCGCTGCGAAGGAGAGAGGGGACGTAGAGGAGGTGGAGAGGC
TGATCACGGGGCTGTGCGAGGCGTTAAGCGGGATGGAGGGAGGAAAGGAG
GGCGTGAGAGAGGAGTACTTGCACACGGTGGAAGATTGTATGCGGAGTGG
AGACTGGTTCCCACTGTTGGAATACTACGGGCCAAGTTTGCGAGGGAGGG
GGGGAGGCTACAGTGCATGGCAGCAAGCGCAACAGATGGAGCAGCAGAGA
AGAGGGGGAGAGAGGGATCACAGGAGAAGAGGGAGGAGATGA
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Synonyms
Publications