NO02G03900, NO02G03900 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G03900 vs. NCBI_GenBank
Match: EWM30267.1 (Uncharacterized protein family UPF0405 [Nannochloropsis gaditana]) HSP 1 Score: 242.3 bits (617), Expect = 2.000e-60 Identity = 143/271 (52.77%), Postives = 179/271 (66.05%), Query Frame = 0 Query: 37 MESFEEALVGWRGLLPGETTLLTDEDPLADGHALLLHLLAQALRHGTRVYCFAAAAPQSHYTAVLRKLGVDKAKLDEEGDMFVYVPLLPARLPPSDGAGQPALAMAPLLRNLAEYLRQQQQIQQ-HVVVVIDDLSLVAGVYGARVAVELVQVFRGAIMQCQPSIAAPIR--PSLLVRVLEGEGDDDDESDIEDEYGDAHSISLIDLLLRTADALVEVRPLTSGYSRDVHGLITVRPWPGARPELINFKLGEGGLKCGRLTASSAVVGMGRA 305 MESFE+AL+ WRG++ G+ LLTDEDPLADGHALLL L+AQ LRHGTRV C A++ P++ YT+VLR+LGV+K KLD F YV LLP PS + Q L +LA + +Q Q ++VIDD+S+VAGVYG R AV+ VQ RG +++ PS A R SLLVR L G ++DE ++ SI+L+ LLR A VEV PL SGYSRDVHGLITVR EL+NFK+GEGG+KCGRL+ SSA VG+ A Sbjct: 1 MESFEDALLEWRGIVAGQMALLTDEDPLADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGKLDGTSGAFRYVSLLPTY--PSSASTQ------SLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRAL---GKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGLITVRHQEATHAELLNFKVGEGGIKCGRLSLSSAKVGINVA 260
BLAST of NO02G03900 vs. NCBI_GenBank
Match: XP_008606300.1 (hypothetical protein SDRG_02487 [Saprolegnia diclina VS20] >EQC40601.1 hypothetical protein SDRG_02487 [Saprolegnia diclina VS20]) HSP 1 Score: 74.7 bits (182), Expect = 5.500e-10 Identity = 76/254 (29.92%), Postives = 115/254 (45.28%), Query Frame = 0 Query: 51 LPGETTLLTDEDPLADGHALLLHLLAQALRHGTRVYCFAAAAPQSHYTAVLRKLGVD-------KAKLDEEGDMFVYVPLLPARLPPSDGAGQPALAMAPLLRNLAEYLRQQQQI-QQHVVVVIDDLSLVAGVYGARVAVELVQVFRGAIMQCQPSIAAPIRPSLLVRVLEGEGDDDDESDIEDEYGDAHSISLIDLLLRTADALVEVRPLTSGYSRDVHGLITVRP--WPGARP------ELINFKLGEGGLK 289 +P LL ++ A+G LL HL + A+R RV A + +T+V RK+GV+ + L +G Y + A P+DG A A P A YLR Q + + V+VIDDL+ +A YG A+ V+ R + + S L+ ++ G+ D +D H S I + A ++ VR L SGY +D+HG +TV P P RP + + FKL E G++ Sbjct: 13 VPRGHVLLVNDVVEANGCFLLHHLTSMAVRAEQRVCMLALSNSVEQFTSVGRKMGVNVQAAIARQRWLHIDGFSRPYDWCVTA---PTDGTFSMASADTPSDLQ-ALYLRVQSYVATEACVIVIDDLTTLAAFYGVPAALTFVRYCRHLALTTE---------STLLMLMHGDVDYED-----------HVTSFIPAVTDLASTVLTVRGLESGYCKDIHGSVTVTPRQQPACRPVISMVAKTLQFKLVESGMR 242
BLAST of NO02G03900 vs. NCBI_GenBank
Match: XP_012199023.1 (hypothetical protein SPRG_19768 [Saprolegnia parasitica CBS 223.65] >KDO30207.1 hypothetical protein SPRG_19768 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 69.3 bits (168), Expect = 2.300e-8 Identity = 71/252 (28.17%), Postives = 119/252 (47.22%), Query Frame = 0 Query: 51 LPGETTLLTDEDPLADGHALLLHLLAQALRHGTRVYCFAAAAPQSHYTAVLRKLGVD-KAKLDEEGDMFV---YVPLLPARLPPSDGAGQPALAMAPLLRNL-AEYLRQQQQIQQHV-VVVIDDLSLVAGVYGARVAVELVQVFRGAIMQCQPSIAAPIRPSLLVRVLEGEGDDDDESDIEDEYGDAHSISLIDLLLRTADALVEVRPLTSGYSRDVHGLITVRP--WPGARP------ELINFKLGEGGLK 289 +P LL ++ A+G LL HL + A+R RV A + YT+V RK+GV+ +A + ++ + + P P+DG+ ++ A +L A +LR Q + V+VIDDL+ +A YG + V+ R + + S L+ ++ G+ D +D H+ + I + A ++ VR L SGY +D+HG +TV P P +RP + + FKL E G++ Sbjct: 13 VPRGQILLVNDVVEANGCFLLHHLTSMAVRAEQRVCMLALSNSVEQYTSVGRKMGVNVQAAIAQQRWLHIDGFSRPYDWCATAPTDGSF--SMTDAATTSDLHALFLRVQSFVAADACVLVIDDLTALAAFYGVASTLAFVRYCRHLALTTE---------STLLMLVHGDVDCED-----------HATAFIPAVTDLASTVLTVRGLESGYCKDIHGSVTVTPRRQPSSRPVSSILAKTLQFKLVESGMR 242
BLAST of NO02G03900 vs. NCBI_GenBank
Match: XP_022083371.1 (elongator complex protein 6-like [Acanthaster planci]) HSP 1 Score: 67.4 bits (163), Expect = 8.800e-8 Identity = 73/235 (31.06%), Postives = 114/235 (48.51%), Query Frame = 0 Query: 51 LPGETTLLTDEDPLADGHALLLHLLAQALRHGTRVYCFAAAAPQSHYTAVLRKLGVDKAKLDEEGDM-FV-----YVPLLPARLPPSDGAGQP---------ALAMAPLLRNLAEYLRQQQQIQQHV---VVVIDDLSLVAGVYGARVAVELVQVFRGAIMQCQPSIAAPIRPSLLVRVLEGEGDDDDESDIEDEYGDAHSISLIDLLLRTADALVEVRPLTSGYSRDVHGLITV 268 L G LLTD L DG L+ H L+ L+ G V A A SHY AV +KLG++ A L + G + F+ + L+ A + S AGQP A + PL + + +Q+ Q++ +++IDDLS++ + ++V+ V F + CQ S +P + L ++D++DE A LI L A +++V+ L SGYSRDVHG + + Sbjct: 16 LKGNLILLTDS--LTDGSFLVHHFLSTFLKAGHDVCFLALAQSFSHYNAVAQKLGLNLASLRDSGQLAFINGLEFSLQLMHAGI-DSSRAGQPIALQCLVDQAATIQPLYHVIRDASAPKQRDQRNTGSRLLLIDDLSVLISL---GLSVQQVMQF---VHYCQAS-----QPETTIICLV-----HHDTDVDDECNAA----LITQLRHRAHCVLQVQGLDSGYSRDVHGQLKI 227
BLAST of NO02G03900 vs. NCBI_GenBank
Match: XP_005532161.1 (PREDICTED: elongator complex protein 6 [Pseudopodoces humilis]) HSP 1 Score: 65.5 bits (158), Expect = 3.400e-7 Identity = 64/229 (27.95%), Postives = 106/229 (46.29%), Query Frame = 0 Query: 53 GETTLLTDEDPLADGHALLLHLLAQALRHGTRVYCFAAAAPQSHYTAVLRKLGVDKAKLDEEGDMFVYVPLLPARLPPSDGAGQPALAMAPL---------LRNLAEYLR-----QQQQIQQHVVVVIDDLSLVAGVYGARVAVELVQVFRGAIMQCQPSIAAPIRPSLLVRVLEGEGDDDDESDIEDEYGDAHSISLIDLLLRTADALVEVRPLTSGYSRDVHGLITV 268 G+ TLL D DG L+ H L+ LR G +V A SHY V +KLGV A E G + V++ L + L G + +PL LR L +++R + V+++DDLS++ + A VAV I C+ S+ ++ +++V V EG +D+E+++ L++ L +D ++ L +G+ +DVHG I + Sbjct: 19 GKFTLL--RDTRTDGSFLVHHFLSFYLRAGCKVCFVALLQSFSHYNIVAQKLGVSLAAAKERGQL-VFLEGLKSCLDLLFGEEEQPGQPSPLQFLSGSTSDLRALFDFVRVSLAPSDGDSWKGPVLLVDDLSVLLSLGAAPVAV------LDFIHYCRMSVCCQLKGNIVVLVHSNEGSEDEENEL-----------LVNSLCHHSDLVLWAEGLATGFCKDVHGQIKI 227
BLAST of NO02G03900 vs. NCBI_GenBank
Match: XP_005040519.1 (PREDICTED: elongator complex protein 6 [Ficedula albicollis]) HSP 1 Score: 65.1 bits (157), Expect = 4.400e-7 Identity = 62/228 (27.19%), Postives = 106/228 (46.49%), Query Frame = 0 Query: 53 GETTLLTDEDPLADGHALLLHLLAQALRHGTRVYCFAAAAPQSHYTAVLRKLGVDKAKLDEEGDMFVYVPL---LPARLPPSDGAGQPA-----LAMAPLLRNLAEYLRQQ-----QQIQQHVVVVIDDLSLVAGVYGARVAVELVQVFRGAIMQCQPSIAAPIRPSLLVRVLEGEGDDDDESDIEDEYGDAHSISLIDLLLRTADALVEVRPLTSGYSRDVHGLITV 268 G+ TLL D DG L+ H L+ LR G +V A SHY+ V +KLGV+ A E+G + L L + GQP+ + LR L +++R Q + V+++DDLS++ + A VAV I C+ S+ ++ +++V V E +D+E+++ +++ L +D ++ L +G+ +DVHG I + Sbjct: 47 GKFTLL--RDTRTDGSFLVHHFLSFYLRAGCKVCFVALLQSFSHYSIVAQKLGVNLAAAKEQGQLVFLEGLKSCLDLLFGEEEQPGQPSPLQFLSGSSGELRALFDFVRVSLTPCAQASWKGPVLLVDDLSVLLSLGAAPVAV------LDFIHYCRVSVCCQLQGNIVVLVHSSEDSEDEENEL-----------VVNSLCHHSDLILWAEGLATGFCKDVHGQIKI 255
BLAST of NO02G03900 vs. NCBI_GenBank
Match: XP_002191562.2 (PREDICTED: elongator complex protein 6, partial [Taeniopygia guttata]) HSP 1 Score: 65.1 bits (157), Expect = 4.400e-7 Identity = 61/226 (26.99%), Postives = 103/226 (45.58%), Query Frame = 0 Query: 53 GETTLLTDEDPLADGHALLLHLLAQALRHGTRVYCFAAAAPQSHYTAVLRKLGVDKAKLDEEGDMFVYVPL---LPARLPPSDGAGQP-----ALAMAPLLRNLAEYLRQQQQIQ---QHVVVVIDDLSLVAGVYGARVAVELVQVFRGAIMQCQPSIAAPIRPSLLVRVLEGEGDDDDESDIEDEYGDAHSISLIDLLLRTADALVEVRPLTSGYSRDVHGLITV 268 G+ TLL D DG L+ H L+ LR G +V A SHY V +KLGV+ A E+G + L L + GQP +P LR L +++R + V+++DDLS++ + A VAV I C+ + ++ +++V V E +D+E+++ +++ L +D ++ L +G+ +DVHG I + Sbjct: 17 GKFTLLRDTQ--TDGSFLVHHFLSFYLRAGCKVCFVALLQSFSHYNIVAQKLGVNLAAAKEQGQLVFLEGLQSCLDLLFGEEEQPGQPNPLQFLSGSSPDLRALFDFVRVSLSAAGSWKGPVLLVDDLSVLLSLGAAPVAV------LDFIHYCRVCVCCQLKGNIVVLVHSNEDSEDEENEL-----------VVNSLCHHSDLILWAEGLATGFCKDVHGQIKI 223
BLAST of NO02G03900 vs. NCBI_GenBank
Match: XP_009083989.2 (PREDICTED: elongator complex protein 6 [Serinus canaria]) HSP 1 Score: 65.1 bits (157), Expect = 4.400e-7 Identity = 63/228 (27.63%), Postives = 106/228 (46.49%), Query Frame = 0 Query: 53 GETTLLTDEDPLADGHALLLHLLAQALRHGTRVYCFAAAAPQSHYTAVLRKLGVDKAKLDEEGDMFVYVPL---LPARLPPSDGAGQPA----LAMAPL-LRNLAEYLRQQQQIQ-----QHVVVVIDDLSLVAGVYGARVAVELVQVFRGAIMQCQPSIAAPIRPSLLVRVLEGEGDDDDESDIEDEYGDAHSISLIDLLLRTADALVEVRPLTSGYSRDVHGLITV 268 G+ TLL D DG L+ H L+ LR G +V A SHY+ V +KLGV A E G + L L + GQP+ L+ +P LR L +++R + V+++DDLS++ + A VAV I C+ + ++ +++V V E +D+E+++ +++ L +D ++ L +G+ +DVHG IT+ Sbjct: 37 GKFTLL--RDTRTDGSFLVHHFLSFYLRAGCKVCFVALLQSFSHYSIVAQKLGVSLAAAKERGQLVFLEGLKSCLDLLFGEEEQPGQPSPLQFLSGSPCDLRALFDFVRVSLSATGGDSWKGPVLLVDDLSVLLSLGAAPVAV------LDFIHYCRVCVCCQLKGNIVVLVHSNEDSEDEENEL-----------VVNSLCHHSDLILWAEGLATGFCKDVHGQITI 245
BLAST of NO02G03900 vs. NCBI_GenBank
Match: XP_021394661.1 (elongator complex protein 6 isoform X2 [Lonchura striata domestica]) HSP 1 Score: 64.7 bits (156), Expect = 5.700e-7 Identity = 61/225 (27.11%), Postives = 103/225 (45.78%), Query Frame = 0 Query: 53 GETTLLTDEDPLADGHALLLHLLAQALRHGTRVYCFAAAAPQSHYTAVLRKLGVDKAKLDEEGDMFVYVPL---LPARLPPSDGAGQP----ALAMAPLLRNLAEYLR---QQQQIQQHVVVVIDDLSLVAGVYGARVAVELVQVFRGAIMQCQPSIAAPIRPSLLVRVLEGEGDDDDESDIEDEYGDAHSISLIDLLLRTADALVEVRPLTSGYSRDVHGLITV 268 G+ TLL D DG L+ H L+ LR G +V A SHY V +KLGV+ A E+G + L L + GQP + P LR L +++R + V+++DDLS++ + A VAV I C+ + ++ +++V V E +D+E+++ +++ L +D ++ L +G+ +DVHG I + Sbjct: 19 GKFTLL--RDTRTDGSFLVHHFLSFYLRAGCKVCFVALLQSFSHYNIVAQKLGVNLAAAKEQGQLVFLEGLQSCLDLLFGEEEQPGQPNPLQFVRSTPELRALFDFVRVSLSAADSWKGPVLLVDDLSVLLSLGAAPVAV------LDFIHYCRVYVCCQLKGNVVVLVHSNEDSEDEENEL-----------VVNSLCHHSDLILWAEGLATGFCKDVHGQIKI 224
BLAST of NO02G03900 vs. NCBI_GenBank
Match: XP_021394660.1 (elongator complex protein 6 isoform X1 [Lonchura striata domestica] >OWK52918.1 Elongator complex protein 6 [Lonchura striata domestica]) HSP 1 Score: 63.9 bits (154), Expect = 9.800e-7 Identity = 61/226 (26.99%), Postives = 102/226 (45.13%), Query Frame = 0 Query: 53 GETTLLTDEDPLADGHALLLHLLAQALRHGTRVYCFAAAAPQSHYTAVLRKLGVDKAKLDEEGDMFVYVPL---LPARLPPSDGAGQP-----ALAMAPLLRNLAEYLR---QQQQIQQHVVVVIDDLSLVAGVYGARVAVELVQVFRGAIMQCQPSIAAPIRPSLLVRVLEGEGDDDDESDIEDEYGDAHSISLIDLLLRTADALVEVRPLTSGYSRDVHGLITV 268 G+ TLL D DG L+ H L+ LR G +V A SHY V +KLGV+ A E+G + L L + GQP P LR L +++R + V+++DDLS++ + A VAV I C+ + ++ +++V V E +D+E+++ +++ L +D ++ L +G+ +DVHG I + Sbjct: 19 GKFTLL--RDTRTDGSFLVHHFLSFYLRAGCKVCFVALLQSFSHYNIVAQKLGVNLAAAKEQGQLVFLEGLQSCLDLLFGEEEQPGQPNPLQFVSRSTPELRALFDFVRVSLSAADSWKGPVLLVDDLSVLLSLGAAPVAV------LDFIHYCRVYVCCQLKGNVVVLVHSNEDSEDEENEL-----------VVNSLCHHSDLILWAEGLATGFCKDVHGQIKI 225 The following BLAST results are available for this feature:
BLAST of NO02G03900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 10
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G03900 ID=NO02G03900|Name=NO02G03900|organism=Nannochloropsis oceanica|type=gene|length=1451bpback to top protein sequence of NO02G03900.1 >NO02G03900.1-protein ID=NO02G03900.1-protein|Name=NO02G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bpback to top Synonyms
Publications
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