NO02G03900.1, NO02G03900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03900.1
Unique NameNO02G03900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1451
Alignment locationchr2:1068238..1069688 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1068238..1069688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03900.1 vs.
Match: EWM30267.1 (Uncharacterized protein family UPF0405 [Nannochloropsis gaditana])

HSP 1 Score: 242.3 bits (617), Expect = 2.000e-60
Identity = 143/271 (52.77%), Postives = 179/271 (66.05%), Query Frame = 0 
Query:   37 MESFEEALVGWRGLLPGETTLLTDEDPLADGHALLLHLLAQALRHGTRVYCFAAAAPQSHYTAVLRKLGVDKAKLDEEGDMFVYVPLLPARLPPSDGAGQPALAMAPLLRNLAEYLRQQQQIQQ-HVVVVIDDLSLVAGVYGARVAVELVQVFRGAIMQCQPSIAAPIR--PSLLVRVLEGEGDDDDESDIEDEYGDAHSISLIDLLLRTADALVEVRPLTSGYSRDVHGLITVRPWPGARPELINFKLGEGGLKCGRLTASSAVVGMGRA 305
            MESFE+AL+ WRG++ G+  LLTDEDPLADGHALLL L+AQ LRHGTRV C A++ P++ YT+VLR+LGV+K KLD     F YV LLP    PS  + Q       L  +LA  +   +Q Q    ++VIDD+S+VAGVYG R AV+ VQ  RG +++  PS A   R   SLLVR L   G ++DE        ++ SI+L+  LLR A   VEV PL SGYSRDVHGLITVR       EL+NFK+GEGG+KCGRL+ SSA VG+  A
Sbjct:    1 MESFEDALLEWRGIVAGQMALLTDEDPLADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGKLDGTSGAFRYVSLLPTY--PSSASTQ------SLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRAL---GKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGLITVRHQEATHAELLNFKVGEGGIKCGRLSLSSAKVGINVA 260
The following BLAST results are available for this feature:
BLAST of NO02G03900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30267.12.000e-6052.77Uncharacterized protein family UPF0405 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03900NO02G03900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03900.1NO02G03900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03900.1.cds1NO02G03900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03900.1 ID=NO02G03900.1|Name=NO02G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1451bp
ATGGGCCAGAGAATGGGGAGGTTGTTGAAACAGCGATTGGTGGTGGAAAG
TGTGTCTGCGCTACAATCTCCTACCACCCACCAATCCAACTACACTCATA
AGCAGGCTATGGAGAGCTTCGAGGAGGCCCTGGTCGGCTGGCGGGGCCTT
CTGCCGGGCGAGACGACTTTGCTTACGGACGAAGATCCTCTGGCGGACGG
GCATGCCTTGCTCTTGCACTTGCTGGCCCAGGCATTGAGACATGGCACGC
GCGTGTATTGCTTTGCGGCGGCGGCGCCTCAGTCGCATTACACGGCGGTC
CTTAGGAAGCTAGGCGTGGACAAGGCCAAGCTGGATGAGGAAGGTGACAT
GTTTGTCTACGTCCCTTTGCTCCCAGCACGACTACCACCATCAGACGGCG
CTGGGCAGCCTGCTTTAGCAATGGCGCCTTTGCTGAGAAATTTGGCGGAA
TACTTACGGCAACAACAACAAATACAGCAGCATGTCGTGGTGGTTATTGA
CGACCTGAGCTTGGTGGCGGGCGTGTATGGGGCGCGGGTGGCGGTGGAGC
TTGTACAGGTCTTCCGCGGTGCAATCATGCAATGCCAGCCATCCATCGCC
GCTCCTATTAGACCATCATTGCTAGTGCGTGTGCTTGAGGGGGAAGGTGA
TGACGACGACGAGTCTGACATTGAGGACGAATATGGTGACGCACATTCTA
TAAGCTTAATTGATTTGCTGTTGCGGACGGCGGACGCCTTAGTGGAAGTC
CGCCCGTTGACCTCAGGATACAGTCGAGACGTACATGGTCTCATTACAGT
GCGGCCGTGGCCAGGGGCGCGACCGGAGCTGATCAATTTCAAATTGGGGG
AGGGCGGTCTTAAGTGTGGACGGTTGACGGCGTCGTCCGCCGTAGTTGGA
ATGGGGAGAGCTTCTCCCTAATCGTCAGAATGTGAAGGGTAAGTCCCAGT
GGAGATGGGATAGATCATGACGTGTTTGGGGGCTGTAGTGATGTTCTCAA
AAATGGTAATTTACGAGGTAGTCAATTCCTTGGATGTGAATTGCATGACC
ACAACTTTTTGCTGAACAGCTCCAAAACAAAAAATCAATCATTATTTGGG
TCTTATCTGTCTTAATGTGAACTGAGGCCTCCTTAATTGCGCATTCCACT
CATATCTCGTTTTATACATCTTAAACTTCTTAACTTACTAATTCAGTGCT
GCAAAAATTCCGGTTTATAATTTCTCTGCCCACAACACAGCACCACACGA
CTTGCTCTGCTTTTGTGGAAGACATACCTGAACATGGGAATTGTCCCTGC
CATGCTATTTCAACTTAAGTGGAAAAGGTGGTGATGTCTCGTGATAGCGG
GAGGAAGCTCCAGTTATGTGTCAGAGTTTACAAAGAGAAATGTGAACCCT
CCCCAAGAATATATCGAACGGGAGGAAACAAAAAATAAAGCATATCATTG
T
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protein sequence of NO02G03900.1

>NO02G03900.1-protein ID=NO02G03900.1-protein|Name=NO02G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MGQRMGRLLKQRLVVESVSALQSPTTHQSNYTHKQAMESFEEALVGWRGL
LPGETTLLTDEDPLADGHALLLHLLAQALRHGTRVYCFAAAAPQSHYTAV
LRKLGVDKAKLDEEGDMFVYVPLLPARLPPSDGAGQPALAMAPLLRNLAE
YLRQQQQIQQHVVVVIDDLSLVAGVYGARVAVELVQVFRGAIMQCQPSIA
APIRPSLLVRVLEGEGDDDDESDIEDEYGDAHSISLIDLLLRTADALVEV
RPLTSGYSRDVHGLITVRPWPGARPELINFKLGEGGLKCGRLTASSAVVG
MGRASP*
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mRNA from alignment at chr2:1068238..1069688-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03900.1 ID=NO02G03900.1|Name=NO02G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1451bp|location=Sequence derived from alignment at chr2:1068238..1069688- (Nannochloropsis oceanica)
ATGGGCCAGAGAATGGGGAGGTTGTTGAAACAGCGATTGGTGGTGGAAAG
TGTGTCTGCGCTACAATCTCCTACCACCCACCAATCCAACTACACTCATA
AGCAGGCTATGGAGAGCTTCGAGGAGGCCCTGGTCGGCTGGCGGGGCCTT
CTGCCGGGCGAGACGACTTTGCTTACGGACGAAGATCCTCTGGCGGACGG
GCATGCCTTGCTCTTGCACTTGCTGGCCCAGGCATTGAGACATGGCACGC
GCGTGTATTGCTTTGCGGCGGCGGCGCCTCAGTCGCATTACACGGCGGTC
CTTAGGAAGCTAGGCGTGGACAAGGCCAAGCTGGATGAGGAAGGTGACAT
GTTTGTCTACGTCCCTTTGCTCCCAGCACGACTACCACCATCAGACGGCG
CTGGGCAGCCTGCTTTAGCAATGGCGCCTTTGCTGAGAAATTTGGCGGAA
TACTTACGGCAACAACAACAAATACAGCAGCATGTCGTGGTGGTTATTGA
CGACCTGAGCTTGGTGGCGGGCGTGTATGGGGCGCGGGTGGCGGTGGAGC
TTGTACAGGTCTTCCGCGGTGCAATCATGCAATGCCAGCCATCCATCGCC
GCTCCTATTAGACCATCATTGCTAGTGCGTGTGCTTGAGGGGGAAGGTGA
TGACGACGACGAGTCTGACATTGAGGACGAATATGGTGACGCACATTCTA
TAAGCTTAATTGATTTGCTGTTGCGGACGGCGGACGCCTTAGTGGAAGTC
CGCCCGTTGACCTCAGGATACAGTCGAGACGTACATGGTCTCATTACAGT
GCGGCCGTGGCCAGGGGCGCGACCGGAGCTGATCAATTTCAAATTGGGGG
AGGGCGGTCTTAAGTGTGGACGGTTGACGGCGTCGTCCGCCGTAGTTGGA
ATGGGGAGAGCTTCTCCCTAATCGTCAGAATGTGAAGGGTAAGTCCCAGT
GGAGATGGGATAGATCATGACGTGTTTGGGGGCTGTAGTGATGTTCTCAA
AAATGGTAATTTACGAGGTAGTCAATTCCTTGGATGTGAATTGCATGACC
ACAACTTTTTGCTGAACAGCTCCAAAACAAAAAATCAATCATTATTTGGG
TCTTATCTGTCTTAATGTGAACTGAGGCCTCCTTAATTGCGCATTCCACT
CATATCTCGTTTTATACATCTTAAACTTCTTAACTTACTAATTCAGTGCT
GCAAAAATTCCGGTTTATAATTTCTCTGCCCACAACACAGCACCACACGA
CTTGCTCTGCTTTTGTGGAAGACATACCTGAACATGGGAATTGTCCCTGC
CATGCTATTTCAACTTAAGTGGAAAAGGTGGTGATGTCTCGTGATAGCGG
GAGGAAGCTCCAGTTATGTGTCAGAGTTTACAAAGAGAAATGTGAACCCT
CCCCAAGAATATATCGAACGGGAGGAAACAAAAAATAAAGCATATCATTG
T
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Coding sequence (CDS) from alignment at chr2:1068238..1069688-

>NO02G03900.1 ID=NO02G03900.1|Name=NO02G03900.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr2:1068238..1069688- (Nannochloropsis oceanica)
ATGGGCCAGAGAATGGGGAGGTTGTTGAAACAGCGATTGGTGGTGGAAAG
TGTGTCTGCGCTACAATCTCCTACCACCCACCAATCCAACTACACTCATA
AGCAGGCTATGGAGAGCTTCGAGGAGGCCCTGGTCGGCTGGCGGGGCCTT
CTGCCGGGCGAGACGACTTTGCTTACGGACGAAGATCCTCTGGCGGACGG
GCATGCCTTGCTCTTGCACTTGCTGGCCCAGGCATTGAGACATGGCACGC
GCGTGTATTGCTTTGCGGCGGCGGCGCCTCAGTCGCATTACACGGCGGTC
CTTAGGAAGCTAGGCGTGGACAAGGCCAAGCTGGATGAGGAAGGTGACAT
GTTTGTCTACGTCCCTTTGCTCCCAGCACGACTACCACCATCAGACGGCG
CTGGGCAGCCTGCTTTAGCAATGGCGCCTTTGCTGAGAAATTTGGCGGAA
TACTTACGGCAACAACAACAAATACAGCAGCATGTCGTGGTGGTTATTGA
CGACCTGAGCTTGGTGGCGGGCGTGTATGGGGCGCGGGTGGCGGTGGAGC
TTGTACAGGTCTTCCGCGGTGCAATCATGCAATGCCAGCCATCCATCGCC
GCTCCTATTAGACCATCATTGCTAGTGCGTGTGCTTGAGGGGGAAGGTGA
TGACGACGACGAGTCTGACATTGAGGACGAATATGGTGACGCACATTCTA
TAAGCTTAATTGATTTGCTGTTGCGGACGGCGGACGCCTTAGTGGAAGTC
CGCCCGTTGACCTCAGGATACAGTCGAGACGTACATGGTCTCATTACAGT
GCGGCCGTGGCCAGGGGCGCGACCGGAGCTGATCAATTTCAAATTGGGGG
AGGGCGGTCTTAAGTGTGGACGGTTGACGGCGTCGTCCGCCGTAGTTGGA
ATGGGGAGAGCTTCTCCCTAA
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Synonyms
Publications