NO19G02330, NO19G02330 (gene) Nannochloropsis oceanica

Overview
NameNO19G02330
Unique NameNO19G02330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1152
Alignment locationchr19:669271..670422 -

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Properties
Property NameValue
DescriptionCalcyclin binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:669271..670422 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom
Homology
[Close]
BLAST of NO19G02330 vs. NCBI_GenBank
Match: XP_008896317.1 (hypothetical protein PPTG_04205 [Phytophthora parasitica INRA-310] >ETI35982.1 hypothetical protein F443_17808 [Phytophthora parasitica P1569] >ETK76217.1 hypothetical protein L915_17337 [Phytophthora parasitica] >ETL29655.1 hypothetical protein L916_17230 [Phytophthora parasitica] >ETL82877.1 hypothetical protein L917_17063 [Phytophthora parasitica] >ETM36110.1 hypothetical protein L914_17133 [Phytophthora parasitica] >ETN18680.1 hypothetical protein PPTG_04205 [Phytophthora parasitica INRA-310] >ETO64701.1 hypothetical protein F444_17845 [Phytophthora parasitica P1976] >ETP05800.1 hypothetical protein F441_17685 [Phytophthora parasitica CJ01A1] >ETP33910.1 hypothetical protein F442_17665 [Phytophthora parasitica P10297] >KUF76127.1 hypothetical protein AM587_10014974 [Phytophthora nicotianae] >KUF99314.1 hypothetical protein AM588_10009521 [Phytophthora nicotianae])

HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23
Identity = 60/149 (40.27%), Postives = 92/149 (61.74%), Query Frame = 0 
Query:   34 SALHESIKRKGINSYYYAHSKQNHAP--DWDGREAPRLMSKQAL-EVGVGREPESIRSYAWSDENEKIKIYVTMEGADALGDEAITLEWNELSLILTVQFPDSKTHLFLIKRLYDEIDDASFRVKKDKIILNLKKKEGKTAAWFDLKKD 180
            SALH +IK KG NSYYYAH K+ +    +WDG+ APRL+  Q+L E       E+I +YAW+D N+++ +Y+ + G  A  +E   ++W   SL + ++  + KT L ++ +LYDEI D   + K+D+++L L K   K  +W  LKKD
Sbjct:   16 SALHSNIKTKGTNSYYYAHKKRENVEIHEWDGKAAPRLLKTQSLAEAQPAEVTEAITNYAWADGNKRVSLYLKLPGIGAHKEEDTLIDWTATSLTVKIKNYEGKTRLLVMSKLYDEISDIKTKRKEDQLVLQLVK--AKEFSWHSLKKD 162
[Close]
BLAST of NO19G02330 vs. NCBI_GenBank
Match: XP_009521390.1 (hypothetical protein PHYSODRAFT_285146 [Phytophthora sojae] >EGZ26102.1 hypothetical protein PHYSODRAFT_285146 [Phytophthora sojae])

HSP 1 Score: 118.2 bits (295), Expect = 2.600e-23
Identity = 59/149 (39.60%), Postives = 90/149 (60.40%), Query Frame = 0 
Query:   34 SALHESIKRKGINSYYYAHSKQNHAP--DWDGREAPRLMSKQALEVGVGRE-PESIRSYAWSDENEKIKIYVTMEGADALGDEAITLEWNELSLILTVQFPDSKTHLFLIKRLYDEIDDASFRVKKDKIILNLKKKEGKTAAWFDLKKD 180
            SALH +IK KG NSYYYAH K+ +    +WDG+ APRL+  Q+L      E   +I +YAW+D  +++ +Y+T+ G  A  +E   ++W   SL + ++  + KT L  + +LYDEI D   + K+D+++L L K   K  +W  LKKD
Sbjct:   15 SALHSNIKTKGTNSYYYAHKKRENVEIHEWDGKAAPRLLKTQSLTAAAPAEVTMTITNYAWADGKKRVSVYLTLPGIGAQSEEDTHIDWTATSLTVKIKNYEGKTRLLSVPKLYDEISDVKTKRKEDQLVLQLVK--AKEFSWHSLKKD 161
[Close]
BLAST of NO19G02330 vs. NCBI_GenBank
Match: CBJ48567.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 117.9 bits (294), Expect = 3.400e-23
Identity = 66/163 (40.49%), Postives = 94/163 (57.67%), Query Frame = 0 
Query:   14 DVTEEEFQQVEEEEEDGVPRSALHESIKRKGINSYYYAHSKQNHAPDWDGREAPRLMSKQALEVGVGREPESIRSYAWSDENEKIKIYVTMEGADALGDEAITLEWNELSLILTVQFPDSKTHLFLIKRLYDEIDDASFRVKKDKIILNLKKKEGKTAAWFDL 177
            D +E   QQ  EE+      SAL E++ RKG NSYYYAH +    P WDGR APR ++  +      ++ E +  YAW++E  K+KIYV +EG   + D++I+L+W    L L V  P   +    I  L+D+I  A+FR KK K+I+ L KK+  T  W+DL
Sbjct:   21 DGSETPPQQQTEEQ-----LSALRENLARKGKNSYYYAHDRVMDTPSWDGRSAPRRLATTSATKPAPKKAEKVTDYAWANEKAKVKIYVPLEGCADIEDDSISLKWEARCLDLEVALPSGVSRRLHIPSLHDDITGATFRKKKSKMIVTLVKKDEVT--WYDL 176
[Close]
BLAST of NO19G02330 vs. NCBI_GenBank
Match: XP_002905176.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY53558.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 117.1 bits (292), Expect = 5.700e-23
Identity = 58/149 (38.93%), Postives = 90/149 (60.40%), Query Frame = 0 
Query:   34 SALHESIKRKGINSYYYAHSKQNHAP--DWDGREAPRLMSKQALEVGVGRE-PESIRSYAWSDENEKIKIYVTMEGADALGDEAITLEWNELSLILTVQFPDSKTHLFLIKRLYDEIDDASFRVKKDKIILNLKKKEGKTAAWFDLKKD 180
            SALH +IK KG NSYYYAH K+      +WDG+ APRL+  Q++      E  E+I +YAW+D  +++ +Y+ + G  A  +E   ++W   SL + ++  + KT L ++ +LYDEI D   + K+D+++L L K   K  +W  LKKD
Sbjct:   16 SALHSNIKTKGTNSYYYAHKKREDVEIHEWDGKAAPRLLKTQSMAASQSAEVTEAITNYAWADGKKRVSMYLKLPGIGAYNEEDTHIDWTATSLTVKIKNYEGKTRLLVMSKLYDEISDIKTKRKEDQLVLQLVK--AKEFSWHSLKKD 162
[Close]
BLAST of NO19G02330 vs. NCBI_GenBank
Match: XP_024580341.1 (HSP20-like chaperone [Plasmopara halstedii] >CEG43972.1 HSP20-like chaperone [Plasmopara halstedii])

HSP 1 Score: 110.5 bits (275), Expect = 5.400e-21
Identity = 56/148 (37.84%), Postives = 83/148 (56.08%), Query Frame = 0 
Query:   34 SALHESIKRKGINSYYYAHSKQNHAP--DWDGREAPRLMSKQALEVGVGREPESIRSYAWSDENEKIKIYVTMEGADALGDEAITLEWNELSLILTVQFPDSKTHLFLIKRLYDEIDDASFRVKKDKIILNLKKKEGKTAAWFDLKKD 180
            SAL  +IK KG NSYYYAH ++      +WDG  APRL+  Q+L        ++I +YAW+D    + +Y+ + G     DE   + W   SL + ++  D KT L ++ +LYDEI D   + K+D+++L L K   K  +W  LKKD
Sbjct:   16 SALQSNIKTKGTNSYYYAHKRREDVEIHEWDGNAAPRLLKTQSLVSQSAEVTDAITNYAWADGKRYVSVYLKLPGIGLHKDEDTDVNWTATSLTVKIKNYDGKTRLLVMSKLYDEISDVKVKRKEDQLVLQLVK--AKEFSWHSLKKD 161
[Close]
BLAST of NO19G02330 vs. NCBI_GenBank
Match: GAX93070.1 (Hypothetical protein PINS_000992 [Pythium insidiosum])

HSP 1 Score: 108.6 bits (270), Expect = 2.000e-20
Identity = 63/161 (39.13%), Postives = 92/161 (57.14%), Query Frame = 0 
Query:   21 QQVEEEEEDGVPRSALHESIKRKGINSYYYAHSKQN--HAPDWDGREAPRLMSKQALEVGVGREPESIRSYAWSDENEKIKIYVTMEGADALGDEAITLEWNELSLILTVQFPDSKTHLFLIKRLYDEIDDASFRVKKDKIILNLKKKEGKTAAWFDLKKD 180
            Q   EE+ D    SALH +I+ KG NSYYYAH  ++      WDG+ APRL+ K+          ESI +YAW+D  +K+ IYVT+E      +E I ++W   +L + V     KT +  +K LYDEI D   + K+++++L L+K   K  +W+ LKKD
Sbjct:   12 QSAAEEQND---LSALHSNIQTKGQNSYYYAHKPRDGVEVHQWDGKAAPRLLKKEEFNAEEVERVESITTYAWADGKKKVSIYVTLENIGEHPEELIDVQWTASTLNVRVLKYQGKTRVLSMK-LYDEISDVKTKRKENQLVLMLQK--AKEFSWYSLKKD 166
[Close]
BLAST of NO19G02330 vs. NCBI_GenBank
Match: OWZ03068.1 (hypothetical protein PHMEG_00025267 [Phytophthora megakarya])

HSP 1 Score: 108.2 bits (269), Expect = 2.700e-20
Identity = 56/149 (37.58%), Postives = 86/149 (57.72%), Query Frame = 0 
Query:   34 SALHESIKRKGINSYYYAHSKQNHAP--DWDGREAPRLMSKQALEVG-VGREPESIRSYAWSDENEKIKIYVTMEGADALGDEAITLEWNELSLILTVQFPDSKTHLFLIKRLYDEIDDASFRVKKDKIILNLKKKEGKTAAWFDLKKD 180
            SAL  +IK KG NSYYYAH K+      +WDG  APRL+  Q++         E+I +YAW+D  +++ +Y+ + G     +E   ++W   SL + +Q  + KT L  + +LYDEI D   + K+D+++L+L K   K  +W  LKKD
Sbjct:   10 SALQSNIKTKGTNSYYYAHKKREDVEIHEWDGNAAPRLLKTQSMASSEAAPVTEAITNYAWADGKKRVSVYLKLPGIGEHKEEDTHVDWTATSLSVQIQNYEGKTRLLSVAKLYDEISDVQTKRKEDQLVLHLVK--AKDFSWHSLKKD 156
[Close]
BLAST of NO19G02330 vs. NCBI_GenBank
Match: POM61745.1 (hypothetical protein PHPALM_29200 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 107.8 bits (268), Expect = 3.500e-20
Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = 0 
Query:   26 EEEDGVPRSALHESIKRKGINSYYYAHSKQNHAP--DWDGREAPRLMSKQALEVG-VGREPESIRSYAWSDENEKIKIYVTMEGADALGDEAITLEWNELSLILTVQFPDSKTHLFLIKRLYDEIDDASFRVKKDKIILNLKKKEGKTAAWFDLKKD 180
            EE      SAL  +IK KG NSYYYAH K+      +WDG+ APRL+  Q++          +I +YAW+D  +++ +Y+ + G  A  +E   + W   SL + ++  + KT L  + +LYDEI D   + K+D+++L L K   K  +W  LKKD
Sbjct:    2 EEASAAEISALQSNIKTKGTNSYYYAHKKREDVEIHEWDGKAAPRLLKTQSVAASEAATVTTAITNYAWADGKKRVSVYLKLPGIGAHDEEDTHINWTATSLSVEIKNYEGKTRLLSVAKLYDEISDVKTKRKEDQLVLQLVK--AKEFSWHSLKKD 156
[Close]
BLAST of NO19G02330 vs. NCBI_GenBank
Match: POM73096.1 (Hypothetical protein PHPALM_10092 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 107.8 bits (268), Expect = 3.500e-20
Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = 0 
Query:   26 EEEDGVPRSALHESIKRKGINSYYYAHSKQNHAP--DWDGREAPRLMSKQALEVG-VGREPESIRSYAWSDENEKIKIYVTMEGADALGDEAITLEWNELSLILTVQFPDSKTHLFLIKRLYDEIDDASFRVKKDKIILNLKKKEGKTAAWFDLKKD 180
            EE      SAL  +IK KG NSYYYAH K+      +WDG+ APRL+  Q++          +I +YAW+D  +++ +Y+ + G  A  +E   + W   SL + ++  + KT L  + +LYDEI D   + K+D+++L L K   K  +W  LKKD
Sbjct:    2 EEASAAEISALQSNIKTKGTNSYYYAHKKREDVEIHEWDGKAAPRLLKTQSVAASEAATVTAAITNYAWADGKKRVSVYLKLPGIGAHDEEDTHINWTATSLSVEIKNYEGKTRLLSVAKLYDEISDVKTKRKEDQLVLQLVK--AKEFSWHSLKKD 156
[Close]
BLAST of NO19G02330 vs. NCBI_GenBank
Match: XP_008875707.1 (hypothetical protein H310_10977 [Aphanomyces invadans] >ETV95514.1 hypothetical protein H310_10977 [Aphanomyces invadans])

HSP 1 Score: 105.5 bits (262), Expect = 1.700e-19
Identity = 62/160 (38.75%), Postives = 90/160 (56.25%), Query Frame = 0 
Query:   24 EEEEEDGVPRSALHESIKRKGINSYYYAHSKQNHAPD--WDGREAPRLMSKQALEVGVGREPESIRSYAWSDENEKIKIYVTMEGADALGDEAITLEWN--ELSLILTVQFPDSKTHLFLIKRLYDEIDDASFRVKKDKIILNLKKKEGKTAAWFDLKKD 180
            +E      P SALH +I+ KG N+YYYAH K++ A D  WDG+  PRL++K    + V  +   I SYAWSD  +   +Y+ +    +  DE+ITL+W+  EL + +    P     +F IK LY+E+   + + K DKI+L L K   K   W+ LKKD
Sbjct:    4 DESNSKDAPLSALHSNIRDKGTNAYYYAHKKRSGADDHQWDGQCEPRLIAKSDSVISVSTD-RPITSYAWSDGKKCATVYIDIPAIASHPDESITLDWSARELEVRIRDFDPSGADLVFKIKYLYEEVMGVTLKKKDDKIVLRLVK--AKELTWYTLKKD 160
The following BLAST results are available for this feature:
BLAST of NO19G02330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008896317.11.200e-2340.27hypothetical protein PPTG_04205 [Phytophthora para... [more]
XP_009521390.12.600e-2339.60hypothetical protein PHYSODRAFT_285146 [Phytophtho... [more]
CBJ48567.13.400e-2340.49conserved unknown protein [Ectocarpus siliculosus][more]
XP_002905176.15.700e-2338.93conserved hypothetical protein [Phytophthora infes... [more]
XP_024580341.15.400e-2137.84HSP20-like chaperone [Plasmopara halstedii] >CEG43... [more]
GAX93070.12.000e-2039.13Hypothetical protein PINS_000992 [Pythium insidios... [more]
OWZ03068.12.700e-2037.58hypothetical protein PHMEG_00025267 [Phytophthora ... [more]
POM61745.13.500e-2036.31hypothetical protein PHPALM_29200 [Phytophthora pa... [more]
POM73096.13.500e-2036.31Hypothetical protein PHPALM_10092 [Phytophthora pa... [more]
XP_008875707.11.700e-1938.75hypothetical protein H310_10977 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02330.1NO19G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599434gene_7633Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02330.1NO19G02330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02330 ID=NO19G02330|Name=NO19G02330|organism=Nannochloropsis oceanica|type=gene|length=1152bp
ATGTCGTCTTTCGCTGACCCAGGAGATCTTGAACCAACAGATGTGACGGA
GGAAGAGTTCCAACAGGTGGAGGAGGAAGAAGAGGATGGCGTGCCGCGCT
CGGCATTGCATGAGAGTATCAAGAGGAAAGGCATCAACAGCTACTACTAC
GCGCACAGCAAGCAGAATCgtgagtgggaggaaaggaggtgataggagaa
gcgctttgcaaaatgaagtccgatgcccacctttcttcctctcctccctc
cccttcctcccacttgtcagACGCCCCTGACTGGGATGGCCGTGAAGCGC
CTCGATTAATGTCGAAGCAGGCGTTGGAAGTAGGAGTAGGGAGAGAGCCC
GAGTCTATCCGCTCGTATGCCTGGAGTGACGAGAACGAGAAGATCAAgta
aggagggggggaggcagggagggagggagggaataatttatacatgattc
aacatgttgacaactctcgtataccctccctcccttcctctcttcgttct
atcagAATCTACGTGACGATGGAGGGCGCCGACGCGCTAGGCGACGAGGC
CATTACTTTGGAGTGGAACGAGCTTTCCCTCATCCTTACTGTTCAATTTC
CTGATAGCAAGgcaagtccttgtcctacaccctctctcatttcatttatt
tcattccgtcatccctctcttcttctcccattctttttctgagtggattg
aattacttattattctcacggtgcgagcgcccgagatcaaggtctatcct
tccctcgtcttcccgccctcccttcctccctctctccctccctccctccc
tcccttccttcttccctccctacctcaagagccaatttatgtgatgaagc
ggctctactactttaacagaggtgcttagtatgctttttgtgtcggaaat
tcaagatcaatcataaccttcaggataagcgaagaaaaacgtacccacgc
cctcttcctccctccctccctccctccctccctccctccctcccttcctc
cctcctttcagACCCATCTTTTCCTAATCAAGCGGCTCTACGACGAGATC
GATGATGCTTCTTTCCGTGTCAAGAAAGATAAGATTATTCTGAACCTGAA
GAAAAAGGAGGGCAAGACAGCGGCATGGTTCGATCTCAAGAAGGACTTCT
GA
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protein sequence of NO19G02330.1

>NO19G02330.1-protein ID=NO19G02330.1-protein|Name=NO19G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MSSFADPGDLEPTDVTEEEFQQVEEEEEDGVPRSALHESIKRKGINSYYY
AHSKQNHAPDWDGREAPRLMSKQALEVGVGREPESIRSYAWSDENEKIKI
YVTMEGADALGDEAITLEWNELSLILTVQFPDSKTHLFLIKRLYDEIDDA
SFRVKKDKIILNLKKKEGKTAAWFDLKKDF*
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Synonyms
Publications