NO19G02330.1, NO19G02330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02330.1
Unique NameNO19G02330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length543
Alignment locationchr19:669271..670422 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:669271..670422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02330.1 vs.
Match: XP_008896317.1 (hypothetical protein PPTG_04205 [Phytophthora parasitica INRA-310]; ETI35982.1 hypothetical protein F443_17808 [Phytophthora parasitica P1569]; ETK76217.1 hypothetical protein L915_17337 [Phytophthora parasitica]; ETL29655.1 hypothetical protein L916_17230 [Phytophthora parasitica]; ETL82877.1 hypothetical protein L917_17063 [Phytophthora parasitica]; ETM36110.1 hypothetical protein L914_17133 [Phytophthora parasitica]; ETN18680.1 hypothetical protein PPTG_04205 [Phytophthora parasitica INRA-310]; ETO64701.1 hypothetical protein F444_17845 [Phytophthora parasitica P1976]; ETP05800.1 hypothetical protein F441_17685 [Phytophthora parasitica CJ01A1]; ETP33910.1 hypothetical protein F442_17665 [Phytophthora parasitica P10297]; KUF76127.1 hypothetical protein AM587_10014974 [Phytophthora nicotianae]; KUF99314.1 hypothetical protein AM588_10009521 [Phytophthora nicotianae])

HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23
Identity = 60/149 (40.27%), Postives = 92/149 (61.74%), Query Frame = 0 
Query:   34 SALHESIKRKGINSYYYAHSKQNHAP--DWDGREAPRLMSKQAL-EVGVGREPESIRSYAWSDENEKIKIYVTMEGADALGDEAITLEWNELSLILTVQFPDSKTHLFLIKRLYDEIDDASFRVKKDKIILNLKKKEGKTAAWFDLKKD 180
            SALH +IK KG NSYYYAH K+ +    +WDG+ APRL+  Q+L E       E+I +YAW+D N+++ +Y+ + G  A  +E   ++W   SL + ++  + KT L ++ +LYDEI D   + K+D+++L L K   K  +W  LKKD
Sbjct:   16 SALHSNIKTKGTNSYYYAHKKRENVEIHEWDGKAAPRLLKTQSLAEAQPAEVTEAITNYAWADGNKRVSLYLKLPGIGAHKEEDTLIDWTATSLTVKIKNYEGKTRLLVMSKLYDEISDIKTKRKEDQLVLQLVK--AKEFSWHSLKKD 162
The following BLAST results are available for this feature:
BLAST of NO19G02330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008896317.11.200e-2340.27hypothetical protein PPTG_04205 [Phytophthora para... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02330NO19G02330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02330.1NO19G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02330.1.cds1NO19G02330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02330.1.cds2NO19G02330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02330.1.cds3NO19G02330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02330.1.cds4NO19G02330.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02330.1 ID=NO19G02330.1|Name=NO19G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=543bp
ATGTCGTCTTTCGCTGACCCAGGAGATCTTGAACCAACAGATGTGACGGA
GGAAGAGTTCCAACAGGTGGAGGAGGAAGAAGAGGATGGCGTGCCGCGCT
CGGCATTGCATGAGAGTATCAAGAGGAAAGGCATCAACAGCTACTACTAC
GCGCACAGCAAGCAGAATCACGCCCCTGACTGGGATGGCCGTGAAGCGCC
TCGATTAATGTCGAAGCAGGCGTTGGAAGTAGGAGTAGGGAGAGAGCCCG
AGTCTATCCGCTCGTATGCCTGGAGTGACGAGAACGAGAAGATCAAAATC
TACGTGACGATGGAGGGCGCCGACGCGCTAGGCGACGAGGCCATTACTTT
GGAGTGGAACGAGCTTTCCCTCATCCTTACTGTTCAATTTCCTGATAGCA
AGACCCATCTTTTCCTAATCAAGCGGCTCTACGACGAGATCGATGATGCT
TCTTTCCGTGTCAAGAAAGATAAGATTATTCTGAACCTGAAGAAAAAGGA
GGGCAAGACAGCGGCATGGTTCGATCTCAAGAAGGACTTCTGA
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protein sequence of NO19G02330.1

>NO19G02330.1-protein ID=NO19G02330.1-protein|Name=NO19G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MSSFADPGDLEPTDVTEEEFQQVEEEEEDGVPRSALHESIKRKGINSYYY
AHSKQNHAPDWDGREAPRLMSKQALEVGVGREPESIRSYAWSDENEKIKI
YVTMEGADALGDEAITLEWNELSLILTVQFPDSKTHLFLIKRLYDEIDDA
SFRVKKDKIILNLKKKEGKTAAWFDLKKDF*
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mRNA from alignment at chr19:669271..670422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02330.1 ID=NO19G02330.1|Name=NO19G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1152bp|location=Sequence derived from alignment at chr19:669271..670422- (Nannochloropsis oceanica)
ATGTCGTCTTTCGCTGACCCAGGAGATCTTGAACCAACAGATGTGACGGA
GGAAGAGTTCCAACAGGTGGAGGAGGAAGAAGAGGATGGCGTGCCGCGCT
CGGCATTGCATGAGAGTATCAAGAGGAAAGGCATCAACAGCTACTACTAC
GCGCACAGCAAGCAGAATCGTGAGTGGGAGGAAAGGAGGTGATAGGAGAA
GCGCTTTGCAAAATGAAGTCCGATGCCCACCTTTCTTCCTCTCCTCCCTC
CCCTTCCTCCCACTTGTCAGACGCCCCTGACTGGGATGGCCGTGAAGCGC
CTCGATTAATGTCGAAGCAGGCGTTGGAAGTAGGAGTAGGGAGAGAGCCC
GAGTCTATCCGCTCGTATGCCTGGAGTGACGAGAACGAGAAGATCAAGTA
AGGAGGGGGGGAGGCAGGGAGGGAGGGAGGGAATAATTTATACATGATTC
AACATGTTGACAACTCTCGTATACCCTCCCTCCCTTCCTCTCTTCGTTCT
ATCAGAATCTACGTGACGATGGAGGGCGCCGACGCGCTAGGCGACGAGGC
CATTACTTTGGAGTGGAACGAGCTTTCCCTCATCCTTACTGTTCAATTTC
CTGATAGCAAGGCAAGTCCTTGTCCTACACCCTCTCTCATTTCATTTATT
TCATTCCGTCATCCCTCTCTTCTTCTCCCATTCTTTTTCTGAGTGGATTG
AATTACTTATTATTCTCACGGTGCGAGCGCCCGAGATCAAGGTCTATCCT
TCCCTCGTCTTCCCGCCCTCCCTTCCTCCCTCTCTCCCTCCCTCCCTCCC
TCCCTTCCTTCTTCCCTCCCTACCTCAAGAGCCAATTTATGTGATGAAGC
GGCTCTACTACTTTAACAGAGGTGCTTAGTATGCTTTTTGTGTCGGAAAT
TCAAGATCAATCATAACCTTCAGGATAAGCGAAGAAAAACGTACCCACGC
CCTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTC
CCTCCTTTCAGACCCATCTTTTCCTAATCAAGCGGCTCTACGACGAGATC
GATGATGCTTCTTTCCGTGTCAAGAAAGATAAGATTATTCTGAACCTGAA
GAAAAAGGAGGGCAAGACAGCGGCATGGTTCGATCTCAAGAAGGACTTCT
GA
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Coding sequence (CDS) from alignment at chr19:669271..670422-

>NO19G02330.1 ID=NO19G02330.1|Name=NO19G02330.1|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at chr19:669271..670422- (Nannochloropsis oceanica)
ATGTCGTCTTTCGCTGACCCAGGAGATCTTGAACCAACAGATGTGACGGA
GGAAGAGTTCCAACAGGTGGAGGAGGAAGAAGAGGATGGCGTGCCGCGCT
CGGCATTGCATGAGAGTATCAAGAGGAAAGGCATCAACAGCTACTACTAC
GCGCACAGCAAGCAGAATCACGCCCCTGACTGGGATGGCCGTGAAGCGCC
TCGATTAATGTCGAAGCAGGCGTTGGAAGTAGGAGTAGGGAGAGAGCCCG
AGTCTATCCGCTCGTATGCCTGGAGTGACGAGAACGAGAAGATCAAAATC
TACGTGACGATGGAGGGCGCCGACGCGCTAGGCGACGAGGCCATTACTTT
GGAGTGGAACGAGCTTTCCCTCATCCTTACTGTTCAATTTCCTGATAGCA
AGACCCATCTTTTCCTAATCAAGCGGCTCTACGACGAGATCGATGATGCT
TCTTTCCGTGTCAAGAAAGATAAGATTATTCTGAACCTGAAGAAAAAGGA
GGGCAAGACAGCGGCATGGTTCGATCTCAAGAAGGACTTCTGA
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Synonyms
Publications