NO19G02150, NO19G02150 (gene) Nannochloropsis oceanica

Overview
NameNO19G02150
Unique NameNO19G02150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2423
Alignment locationchr19:614336..616758 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:614336..616758 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO19G02150 vs. NCBI_GenBank
Match: EWM23711.1 (hypothetical protein Naga_101220g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 548.9 bits (1413), Expect = 2.000e-152
Identity = 283/369 (76.69%), Postives = 322/369 (87.26%), Query Frame = 0 
Query:  257 EEGVARLGMVMELGRYAAESLALARGLNPAQDPDAFEEGVQGVLAEKVNGIGVELSSSIRSSLLGGYVRQWVLECMLHRSLPVPWEDGEGRLRAGDIGGWDLARQVLSLSEMQLLYVAKETVPVVVGEMMAEVWGERGGEWPGGGVGFQRDWGRVCRRLKYDKYEGGTARTKAVRVMAEKVVEGGXXXXXXXXXADQRRELAITWGCETLELGREEFEAMAEDQGTFELQTLVLEGMLGPGGLSAEEVVERIVGEGARMRLDGGSVRRATTAAVQVHIGNLAARALFADMEGQPQKAFKEIESTLRFIQTDAELFRKKLGCEINPTARIADEDGLQLANVCTKMISRRQAPEAARAFLDIIGYSDRVGM 626
            +EGVARL MVMELGR AAESLA+ RGL+  +D + FE GVQ +L+EK+NGIGVE+SSS+RSSLL GY+RQWV E +LHRSLPVPWEDGEG++RAGDIG W LARQVLSLSEMQLLYVAKE VP V+GE+MAEVWGERGGEWPGG + F++ WGRV RRLKYD+YEG TARTKAVRVMAE V EGG XXXXXXXXA  RRE A+ WGCETLEL  EEFEA+AE+QGTFELQT VLE  LGPG ++AEEVVE I  EG RMRL  GS+RRATTAAVQVH+GNLAARALFADMEGQPQKAFKEI+ TL F++ D   +R +LGC+I+PTARIADEDGLQLANVCTKMISRRQAPEAA+AFL+++GYSDRVG+
Sbjct:    3 KEGVARLRMVMELGRGAAESLAVLRGLSANEDSEGFEAGVQAILSEKINGIGVEMSSSVRSSLLSGYLRQWVAEVLLHRSLPVPWEDGEGKVRAGDIGAWGLARQVLSLSEMQLLYVAKEAVPTVLGELMAEVWGERGGEWPGGELAFEKSWGRVYRRLKYDRYEGDTARTKAVRVMAEMVEEGGRXXXXXXXXA--RREQAVRWGCETLELEGEEFEALAEEQGTFELQTKVLEVFLGPGRMTAEEVVEAIEEEGRRMRLSKGSMRRATTAAVQVHVGNLAARALFADMEGQPQKAFKEIQGTLEFLEGDVAEYRDRLGCDIDPTARIADEDGLQLANVCTKMISRRQAPEAAKAFLEVLGYSDRVGL 369
The following BLAST results are available for this feature:
BLAST of NO19G02150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23711.12.000e-15276.69hypothetical protein Naga_101220g1, partial [Nanno... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02150.1NO19G02150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101220g1gene6744Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02150.1NO19G02150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02150 ID=NO19G02150|Name=NO19G02150|organism=Nannochloropsis oceanica|type=gene|length=2423bp
GGCGGAAGGATGGGGGGAGGGGGGAGGAAGAGCGCGTGGGACGAGAAGCA
GGTGCTTGGGGCGATGAGGAAGGGAGCGGGAAACATGTTGGTCAAAAGAA
TTATAGATGGGACCTCGGGGAAGGATTTGGATAGGGAAGGGGAGGGCGAA
GGCGGGTCGGGGCTGGAGCGGCTGGCGGCGTGGGGCGCGCTGGTGGAAAA
GACGATAACGAGCAGTAAGTACTTGCTGACGGCGGACAAGGTCCTGGGGA
TGAAGCACCTGGCGGATCGACTGCTGCCGCCGGAGGACTTCCACGGCGCG
GATATCACCGTTGCCCACCTTGCTGTGATCCGGGCCGTGACTCAGGGAAT
TGCGGACGAGTACCCGGAAGTGAGACGACGGCGAGGGAACATGCTGTACG
TGCTGCTGAACCTCCCGTGGGCGAGTCGGGGCATGGGCAACGTCCACCAA
CACGCGGAGGAGGTGGCGATGGGTTCGGGCATCAGCATGGAGAGCAGCCT
GGGGCTCGGCTGTCGGGCTGTGTTTGAATGCACCATGTCGGAGTGTCTGC
CGGGCTCGAGCGAGGCCCTGTCCTTGATGAAAGCGGAGGTGTTCCGGGGG
ACGACCCGCGCGCTCATGGAGTTTGGGGGCTTGGCACGGCAGGTGCTTGG
GCTGACGAAGATGCCCACCGAGGAGGCGGTGAAGGGAGCGGCCTTCTTCC
TGGTGCCATGGTTAAGGCGGGTGGCGAAACGCGCTTTGGAAGGCGAGGGG
GGAGGTAAGGAAAGCGAGGTGTCGAAGGAGGAGGGGGTGGCAAGGCTAGG
AATGGTGATGGAGTTGGGCAGGTACGCTGCTGAAAGCCTGGCCCTCGCCC
GGGGCCTCAATCCTGCGCAAGACCCCGACGCCTTCGAAGAGGGCGTCCAG
GGCGTCCTGGCGGAGAAGGTCAACGGCATCGGCGTGGAGCTCTCGTCCTC
GATTCGCTCCTCCCTTTTGGGCGGGTACGTGCGTCAGTGGGTGCTGGAAT
GCATGCTGCACCGGTCGCTGCCCGTGCCTTGGGAGGACGGGGAGGGGAGG
CTGCGAGCGGGAGACATTGGCGGGTGGGATTTGGCGAGGCAAGTGTTGAG
TCTCAGCGAGATGCAGCTGCTGTACGTGGCGAAGGAGACGGTTCCGGTGG
TGGTGGGGGAGATGATGGCGGAGGTCTGGGGGGAGAGAGGGGGCGAGTGG
CCGGGGGGTGGGGTGGGGTTCCAGCGGGATTGGGGGAGGGTGTGTCGGAG
GTTGAAGTATGACAAGTACGAGGGAGGGACGGCCAGGACGAAGGCGGTGA
GGGTCATGGCGGAGAAGGTGGTGGAAGGAGGGAGGGAGGGAGGAAAGGAG
GGGGGGAATGCAGACCAGAGGAGGGAGCTGGCGATAACGTGGGGATGCGA
GACGCTGGAGCTGGGGAGGGAGGAGTTCGAGGCGATGGCCGAGGACCAGG
GCACGTTTGAATTGCAGACGCTCGTGCTGGAGGGGATGTTGGGCCCGGGG
GGGCTGAGTGCCGAGGAGGTGGTGGAGAGGATCGTGGGAGAGGGGGCGAG
GATGCGCTTGGACGGGGGCAGCGTGCGGAGGGCGACCACGGCGGCAGTGC
AGGTGCATATTGGGAATTTGGCGGCGCGGGCATTGTTTGCCGACATGGAG
GGGCAGCCCCAGAAGGCGTTTAAGGAGATTGAGAGCACGTTGCGGTTCAT
CCAGACGGACGCTGAGTTGTTCAGGAAGAAGCTCGGGTGCGAGATCAACC
CGACGGCTAGGATCGCGGATGAGGACGGGCTGCAGCTGGCCAACGTGTGC
ACCAAGATGATAAGTAGGCGGCAGGCTCCCGAGGCAGCCCGGGCGTTCCT
GGACATCATCGGGTACAGTGACCGCGTGGGCATGTAGGGGGAAGAAGAGG
AGGGAGGGAGGGATTGAGGGAGTGTCAGAATGGGAGGGAGACGAGAGAAG
TGGATGAGAACATTTTGGCAAACAAAAGAGAGGACGGACAAGGAAAAGAT
CGACAACAACAACAAGAAGAAAAGGAAGAAGTGCCTCAGATGGCGGACGT
AGTGCCTGTGGGATTGAGGCGTAGAGGCAAGCACGCCGAAAGCGTGCGCG
TCTTCCCGGATACATCGATCTAGATTGTGCTTTGAGTCCCGTTATTCCTT
CCTTCCCTCCCTCCCTCCTTTGGCTCGGGCCTCTAATGTAGTTACTGCGG
CCACTGTCGTCAGTCTGAATGACTGCTGCGGTTTTTTCCGTCGTCTCGTG
CAAACTCCAATCCTCGCCTCTTGTGGTGGTTGTGATTGGGGGGGTCTCTT
CCCTCCATTTCATTTTCCAAATTTGTTGCTGCTACATCTTTGCTCTGCTT
TGTTCCCTGTCCTTGCTGTGACTGCTGTTACTCCTGGTGCCACAGCCGCC
AGTTGCGCAAATCCCACCCTCCC
back to top

protein sequence of NO19G02150.1

>NO19G02150.1-protein ID=NO19G02150.1-protein|Name=NO19G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=626bp
MGGGGRKSAWDEKQVLGAMRKGAGNMLVKRIIDGTSGKDLDREGEGEGGS
GLERLAAWGALVEKTITSSKYLLTADKVLGMKHLADRLLPPEDFHGADIT
VAHLAVIRAVTQGIADEYPEVRRRRGNMLYVLLNLPWASRGMGNVHQHAE
EVAMGSGISMESSLGLGCRAVFECTMSECLPGSSEALSLMKAEVFRGTTR
ALMEFGGLARQVLGLTKMPTEEAVKGAAFFLVPWLRRVAKRALEGEGGGK
ESEVSKEEGVARLGMVMELGRYAAESLALARGLNPAQDPDAFEEGVQGVL
AEKVNGIGVELSSSIRSSLLGGYVRQWVLECMLHRSLPVPWEDGEGRLRA
GDIGGWDLARQVLSLSEMQLLYVAKETVPVVVGEMMAEVWGERGGEWPGG
GVGFQRDWGRVCRRLKYDKYEGGTARTKAVRVMAEKVVEGGREGGKEGGN
ADQRRELAITWGCETLELGREEFEAMAEDQGTFELQTLVLEGMLGPGGLS
AEEVVERIVGEGARMRLDGGSVRRATTAAVQVHIGNLAARALFADMEGQP
QKAFKEIESTLRFIQTDAELFRKKLGCEINPTARIADEDGLQLANVCTKM
ISRRQAPEAARAFLDIIGYSDRVGM*
back to top
Synonyms
Publications