NO19G02150.1, NO19G02150.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G02150.1
Unique Name	NO19G02150.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2423
Alignment location	chr19:614336..616758 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:614336..616758 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO19G02150.1 vs.
Match: EWM23711.1 (hypothetical protein Naga_101220g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 566.2 bits (1458), Expect = 1.200e-157
Identity = 282/369 (76.42%), Postives = 322/369 (87.26%), Query Frame = 0

Query:  257 EEGVARLGMVMELGRYAAESLALARGLNPAQDPDAFEEGVQGVLAEKVNGIGVELSSSIRSSLLGGYVRQWVLECMLHRSLPVPWEDGEGRLRAGDIGGWDLARQVLSLSEMQLLYVAKETVPVVVGEMMAEVWGERGGEWPGGGVGFQRDWGRVCRRLKYDKYEGGTARTKAVRVMAEKVVEGGREGGKEGGNADQRRELAITWGCETLELGREEFEAMAEDQGTFELQTLVLEGMLGPGGLSAEEVVERIVGEGARMRLDGGSVRRATTAAVQVHIGNLAARALFADMEGQPQKAFKEIESTLRFIQTDAELFRKKLGCEINPTARIADEDGLQLANVCTKMISRRQAPEAARAFLDIIGYSDRVGM 626
            +EGVARL MVMELGR AAESLA+ RGL+  +D + FE GVQ +L+EK+NGIGVE+SSS+RSSLL GY+RQWV E +LHRSLPVPWEDGEG++RAGDIG W LARQVLSLSEMQLLYVAKE VP V+GE+MAEVWGERGGEWPGG + F++ WGRV RRLKYD+YEG TARTKAVRVMAE V EGGR+GGKEGG A  RRE A+ WGCETLEL  EEFEA+AE+QGTFELQT VLE  LGPG ++AEEVVE I  EG RMRL  GS+RRATTAAVQVH+GNLAARALFADMEGQPQKAFKEI+ TL F++ D   +R +LGC+I+PTARIADEDGLQLANVCTKMISRRQAPEAA+AFL+++GYSDRVG+
Sbjct:    3 KEGVARLRMVMELGRGAAESLAVLRGLSANEDSEGFEAGVQAILSEKINGIGVEMSSSVRSSLLSGYLRQWVAEVLLHRSLPVPWEDGEGKVRAGDIGAWGLARQVLSLSEMQLLYVAKEAVPTVLGELMAEVWGERGGEWPGGELAFEKSWGRVYRRLKYDRYEGDTARTKAVRVMAEMVEEGGRKGGKEGGEA--RREQAVRWGCETLELEGEEFEALAEEQGTFELQTKVLEVFLGPGRMTAEEVVEAIEEEGRRMRLSKGSMRRATTAAVQVHVGNLAARALFADMEGQPQKAFKEIQGTLEFLEGDVAEYRDRLGCDIDPTARIADEDGLQLANVCTKMISRRQAPEAAKAFLEVLGYSDRVGL 369

The following BLAST results are available for this feature:

BLAST of NO19G02150.1 vs.

BLAST of NO19G02150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23711.1	1.200e-157	76.42	hypothetical protein Naga_101220g1, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G02150	NO19G02150	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02150.1	NO19G02150.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02150.1.cds1	NO19G02150.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:614336..616758+
coding sequence from alignment at chr19:614336..616758+

mRNA sequence

>NO19G02150.1 ID=NO19G02150.1|Name=NO19G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2423bp
GGCGGAAGGATGGGGGGAGGGGGGAGGAAGAGCGCGTGGGACGAGAAGCA
GGTGCTTGGGGCGATGAGGAAGGGAGCGGGAAACATGTTGGTCAAAAGAA
TTATAGATGGGACCTCGGGGAAGGATTTGGATAGGGAAGGGGAGGGCGAA
GGCGGGTCGGGGCTGGAGCGGCTGGCGGCGTGGGGCGCGCTGGTGGAAAA
GACGATAACGAGCAGTAAGTACTTGCTGACGGCGGACAAGGTCCTGGGGA
TGAAGCACCTGGCGGATCGACTGCTGCCGCCGGAGGACTTCCACGGCGCG
GATATCACCGTTGCCCACCTTGCTGTGATCCGGGCCGTGACTCAGGGAAT
TGCGGACGAGTACCCGGAAGTGAGACGACGGCGAGGGAACATGCTGTACG
TGCTGCTGAACCTCCCGTGGGCGAGTCGGGGCATGGGCAACGTCCACCAA
CACGCGGAGGAGGTGGCGATGGGTTCGGGCATCAGCATGGAGAGCAGCCT
GGGGCTCGGCTGTCGGGCTGTGTTTGAATGCACCATGTCGGAGTGTCTGC
CGGGCTCGAGCGAGGCCCTGTCCTTGATGAAAGCGGAGGTGTTCCGGGGG
ACGACCCGCGCGCTCATGGAGTTTGGGGGCTTGGCACGGCAGGTGCTTGG
GCTGACGAAGATGCCCACCGAGGAGGCGGTGAAGGGAGCGGCCTTCTTCC
TGGTGCCATGGTTAAGGCGGGTGGCGAAACGCGCTTTGGAAGGCGAGGGG
GGAGGTAAGGAAAGCGAGGTGTCGAAGGAGGAGGGGGTGGCAAGGCTAGG
AATGGTGATGGAGTTGGGCAGGTACGCTGCTGAAAGCCTGGCCCTCGCCC
GGGGCCTCAATCCTGCGCAAGACCCCGACGCCTTCGAAGAGGGCGTCCAG
GGCGTCCTGGCGGAGAAGGTCAACGGCATCGGCGTGGAGCTCTCGTCCTC
GATTCGCTCCTCCCTTTTGGGCGGGTACGTGCGTCAGTGGGTGCTGGAAT
GCATGCTGCACCGGTCGCTGCCCGTGCCTTGGGAGGACGGGGAGGGGAGG
CTGCGAGCGGGAGACATTGGCGGGTGGGATTTGGCGAGGCAAGTGTTGAG
TCTCAGCGAGATGCAGCTGCTGTACGTGGCGAAGGAGACGGTTCCGGTGG
TGGTGGGGGAGATGATGGCGGAGGTCTGGGGGGAGAGAGGGGGCGAGTGG
CCGGGGGGTGGGGTGGGGTTCCAGCGGGATTGGGGGAGGGTGTGTCGGAG
GTTGAAGTATGACAAGTACGAGGGAGGGACGGCCAGGACGAAGGCGGTGA
GGGTCATGGCGGAGAAGGTGGTGGAAGGAGGGAGGGAGGGAGGAAAGGAG
GGGGGGAATGCAGACCAGAGGAGGGAGCTGGCGATAACGTGGGGATGCGA
GACGCTGGAGCTGGGGAGGGAGGAGTTCGAGGCGATGGCCGAGGACCAGG
GCACGTTTGAATTGCAGACGCTCGTGCTGGAGGGGATGTTGGGCCCGGGG
GGGCTGAGTGCCGAGGAGGTGGTGGAGAGGATCGTGGGAGAGGGGGCGAG
GATGCGCTTGGACGGGGGCAGCGTGCGGAGGGCGACCACGGCGGCAGTGC
AGGTGCATATTGGGAATTTGGCGGCGCGGGCATTGTTTGCCGACATGGAG
GGGCAGCCCCAGAAGGCGTTTAAGGAGATTGAGAGCACGTTGCGGTTCAT
CCAGACGGACGCTGAGTTGTTCAGGAAGAAGCTCGGGTGCGAGATCAACC
CGACGGCTAGGATCGCGGATGAGGACGGGCTGCAGCTGGCCAACGTGTGC
ACCAAGATGATAAGTAGGCGGCAGGCTCCCGAGGCAGCCCGGGCGTTCCT
GGACATCATCGGGTACAGTGACCGCGTGGGCATGTAGGGGGAAGAAGAGG
AGGGAGGGAGGGATTGAGGGAGTGTCAGAATGGGAGGGAGACGAGAGAAG
TGGATGAGAACATTTTGGCAAACAAAAGAGAGGACGGACAAGGAAAAGAT
CGACAACAACAACAAGAAGAAAAGGAAGAAGTGCCTCAGATGGCGGACGT
AGTGCCTGTGGGATTGAGGCGTAGAGGCAAGCACGCCGAAAGCGTGCGCG
TCTTCCCGGATACATCGATCTAGATTGTGCTTTGAGTCCCGTTATTCCTT
CCTTCCCTCCCTCCCTCCTTTGGCTCGGGCCTCTAATGTAGTTACTGCGG
CCACTGTCGTCAGTCTGAATGACTGCTGCGGTTTTTTCCGTCGTCTCGTG
CAAACTCCAATCCTCGCCTCTTGTGGTGGTTGTGATTGGGGGGGTCTCTT
CCCTCCATTTCATTTTCCAAATTTGTTGCTGCTACATCTTTGCTCTGCTT
TGTTCCCTGTCCTTGCTGTGACTGCTGTTACTCCTGGTGCCACAGCCGCC
AGTTGCGCAAATCCCACCCTCCC

protein sequence of NO19G02150.1

>NO19G02150.1-protein ID=NO19G02150.1-protein|Name=NO19G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=626bp
MGGGGRKSAWDEKQVLGAMRKGAGNMLVKRIIDGTSGKDLDREGEGEGGS
GLERLAAWGALVEKTITSSKYLLTADKVLGMKHLADRLLPPEDFHGADIT
VAHLAVIRAVTQGIADEYPEVRRRRGNMLYVLLNLPWASRGMGNVHQHAE
EVAMGSGISMESSLGLGCRAVFECTMSECLPGSSEALSLMKAEVFRGTTR
ALMEFGGLARQVLGLTKMPTEEAVKGAAFFLVPWLRRVAKRALEGEGGGK
ESEVSKEEGVARLGMVMELGRYAAESLALARGLNPAQDPDAFEEGVQGVL
AEKVNGIGVELSSSIRSSLLGGYVRQWVLECMLHRSLPVPWEDGEGRLRA
GDIGGWDLARQVLSLSEMQLLYVAKETVPVVVGEMMAEVWGERGGEWPGG
GVGFQRDWGRVCRRLKYDKYEGGTARTKAVRVMAEKVVEGGREGGKEGGN
ADQRRELAITWGCETLELGREEFEAMAEDQGTFELQTLVLEGMLGPGGLS
AEEVVERIVGEGARMRLDGGSVRRATTAAVQVHIGNLAARALFADMEGQP
QKAFKEIESTLRFIQTDAELFRKKLGCEINPTARIADEDGLQLANVCTKM
ISRRQAPEAARAFLDIIGYSDRVGM*

mRNA from alignment at chr19:614336..616758+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G02150.1 ID=NO19G02150.1|Name=NO19G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2423bp|location=Sequence derived from alignment at chr19:614336..616758+ (Nannochloropsis oceanica)
GGCGGAAGGATGGGGGGAGGGGGGAGGAAGAGCGCGTGGGACGAGAAGCA
GGTGCTTGGGGCGATGAGGAAGGGAGCGGGAAACATGTTGGTCAAAAGAA
TTATAGATGGGACCTCGGGGAAGGATTTGGATAGGGAAGGGGAGGGCGAA
GGCGGGTCGGGGCTGGAGCGGCTGGCGGCGTGGGGCGCGCTGGTGGAAAA
GACGATAACGAGCAGTAAGTACTTGCTGACGGCGGACAAGGTCCTGGGGA
TGAAGCACCTGGCGGATCGACTGCTGCCGCCGGAGGACTTCCACGGCGCG
GATATCACCGTTGCCCACCTTGCTGTGATCCGGGCCGTGACTCAGGGAAT
TGCGGACGAGTACCCGGAAGTGAGACGACGGCGAGGGAACATGCTGTACG
TGCTGCTGAACCTCCCGTGGGCGAGTCGGGGCATGGGCAACGTCCACCAA
CACGCGGAGGAGGTGGCGATGGGTTCGGGCATCAGCATGGAGAGCAGCCT
GGGGCTCGGCTGTCGGGCTGTGTTTGAATGCACCATGTCGGAGTGTCTGC
CGGGCTCGAGCGAGGCCCTGTCCTTGATGAAAGCGGAGGTGTTCCGGGGG
ACGACCCGCGCGCTCATGGAGTTTGGGGGCTTGGCACGGCAGGTGCTTGG
GCTGACGAAGATGCCCACCGAGGAGGCGGTGAAGGGAGCGGCCTTCTTCC
TGGTGCCATGGTTAAGGCGGGTGGCGAAACGCGCTTTGGAAGGCGAGGGG
GGAGGTAAGGAAAGCGAGGTGTCGAAGGAGGAGGGGGTGGCAAGGCTAGG
AATGGTGATGGAGTTGGGCAGGTACGCTGCTGAAAGCCTGGCCCTCGCCC
GGGGCCTCAATCCTGCGCAAGACCCCGACGCCTTCGAAGAGGGCGTCCAG
GGCGTCCTGGCGGAGAAGGTCAACGGCATCGGCGTGGAGCTCTCGTCCTC
GATTCGCTCCTCCCTTTTGGGCGGGTACGTGCGTCAGTGGGTGCTGGAAT
GCATGCTGCACCGGTCGCTGCCCGTGCCTTGGGAGGACGGGGAGGGGAGG
CTGCGAGCGGGAGACATTGGCGGGTGGGATTTGGCGAGGCAAGTGTTGAG
TCTCAGCGAGATGCAGCTGCTGTACGTGGCGAAGGAGACGGTTCCGGTGG
TGGTGGGGGAGATGATGGCGGAGGTCTGGGGGGAGAGAGGGGGCGAGTGG
CCGGGGGGTGGGGTGGGGTTCCAGCGGGATTGGGGGAGGGTGTGTCGGAG
GTTGAAGTATGACAAGTACGAGGGAGGGACGGCCAGGACGAAGGCGGTGA
GGGTCATGGCGGAGAAGGTGGTGGAAGGAGGGAGGGAGGGAGGAAAGGAG
GGGGGGAATGCAGACCAGAGGAGGGAGCTGGCGATAACGTGGGGATGCGA
GACGCTGGAGCTGGGGAGGGAGGAGTTCGAGGCGATGGCCGAGGACCAGG
GCACGTTTGAATTGCAGACGCTCGTGCTGGAGGGGATGTTGGGCCCGGGG
GGGCTGAGTGCCGAGGAGGTGGTGGAGAGGATCGTGGGAGAGGGGGCGAG
GATGCGCTTGGACGGGGGCAGCGTGCGGAGGGCGACCACGGCGGCAGTGC
AGGTGCATATTGGGAATTTGGCGGCGCGGGCATTGTTTGCCGACATGGAG
GGGCAGCCCCAGAAGGCGTTTAAGGAGATTGAGAGCACGTTGCGGTTCAT
CCAGACGGACGCTGAGTTGTTCAGGAAGAAGCTCGGGTGCGAGATCAACC
CGACGGCTAGGATCGCGGATGAGGACGGGCTGCAGCTGGCCAACGTGTGC
ACCAAGATGATAAGTAGGCGGCAGGCTCCCGAGGCAGCCCGGGCGTTCCT
GGACATCATCGGGTACAGTGACCGCGTGGGCATGTAGGGGGAAGAAGAGG
AGGGAGGGAGGGATTGAGGGAGTGTCAGAATGGGAGGGAGACGAGAGAAG
TGGATGAGAACATTTTGGCAAACAAAAGAGAGGACGGACAAGGAAAAGAT
CGACAACAACAACAAGAAGAAAAGGAAGAAGTGCCTCAGATGGCGGACGT
AGTGCCTGTGGGATTGAGGCGTAGAGGCAAGCACGCCGAAAGCGTGCGCG
TCTTCCCGGATACATCGATCTAGATTGTGCTTTGAGTCCCGTTATTCCTT
CCTTCCCTCCCTCCCTCCTTTGGCTCGGGCCTCTAATGTAGTTACTGCGG
CCACTGTCGTCAGTCTGAATGACTGCTGCGGTTTTTTCCGTCGTCTCGTG
CAAACTCCAATCCTCGCCTCTTGTGGTGGTTGTGATTGGGGGGGTCTCTT
CCCTCCATTTCATTTTCCAAATTTGTTGCTGCTACATCTTTGCTCTGCTT
TGTTCCCTGTCCTTGCTGTGACTGCTGTTACTCCTGGTGCCACAGCCGCC
AGTTGCGCAAATCCCACCCTCCC

Coding sequence (CDS) from alignment at chr19:614336..616758+

>NO19G02150.1 ID=NO19G02150.1|Name=NO19G02150.1|organism=Nannochloropsis oceanica|type=CDS|length=1878bp|location=Sequence derived from alignment at chr19:614336..616758+ (Nannochloropsis oceanica)
ATGGGGGGAGGGGGGAGGAAGAGCGCGTGGGACGAGAAGCAGGTGCTTGG
GGCGATGAGGAAGGGAGCGGGAAACATGTTGGTCAAAAGAATTATAGATG
GGACCTCGGGGAAGGATTTGGATAGGGAAGGGGAGGGCGAAGGCGGGTCG
GGGCTGGAGCGGCTGGCGGCGTGGGGCGCGCTGGTGGAAAAGACGATAAC
GAGCAGTAAGTACTTGCTGACGGCGGACAAGGTCCTGGGGATGAAGCACC
TGGCGGATCGACTGCTGCCGCCGGAGGACTTCCACGGCGCGGATATCACC
GTTGCCCACCTTGCTGTGATCCGGGCCGTGACTCAGGGAATTGCGGACGA
GTACCCGGAAGTGAGACGACGGCGAGGGAACATGCTGTACGTGCTGCTGA
ACCTCCCGTGGGCGAGTCGGGGCATGGGCAACGTCCACCAACACGCGGAG
GAGGTGGCGATGGGTTCGGGCATCAGCATGGAGAGCAGCCTGGGGCTCGG
CTGTCGGGCTGTGTTTGAATGCACCATGTCGGAGTGTCTGCCGGGCTCGA
GCGAGGCCCTGTCCTTGATGAAAGCGGAGGTGTTCCGGGGGACGACCCGC
GCGCTCATGGAGTTTGGGGGCTTGGCACGGCAGGTGCTTGGGCTGACGAA
GATGCCCACCGAGGAGGCGGTGAAGGGAGCGGCCTTCTTCCTGGTGCCAT
GGTTAAGGCGGGTGGCGAAACGCGCTTTGGAAGGCGAGGGGGGAGGTAAG
GAAAGCGAGGTGTCGAAGGAGGAGGGGGTGGCAAGGCTAGGAATGGTGAT
GGAGTTGGGCAGGTACGCTGCTGAAAGCCTGGCCCTCGCCCGGGGCCTCA
ATCCTGCGCAAGACCCCGACGCCTTCGAAGAGGGCGTCCAGGGCGTCCTG
GCGGAGAAGGTCAACGGCATCGGCGTGGAGCTCTCGTCCTCGATTCGCTC
CTCCCTTTTGGGCGGGTACGTGCGTCAGTGGGTGCTGGAATGCATGCTGC
ACCGGTCGCTGCCCGTGCCTTGGGAGGACGGGGAGGGGAGGCTGCGAGCG
GGAGACATTGGCGGGTGGGATTTGGCGAGGCAAGTGTTGAGTCTCAGCGA
GATGCAGCTGCTGTACGTGGCGAAGGAGACGGTTCCGGTGGTGGTGGGGG
AGATGATGGCGGAGGTCTGGGGGGAGAGAGGGGGCGAGTGGCCGGGGGGT
GGGGTGGGGTTCCAGCGGGATTGGGGGAGGGTGTGTCGGAGGTTGAAGTA
TGACAAGTACGAGGGAGGGACGGCCAGGACGAAGGCGGTGAGGGTCATGG
CGGAGAAGGTGGTGGAAGGAGGGAGGGAGGGAGGAAAGGAGGGGGGGAAT
GCAGACCAGAGGAGGGAGCTGGCGATAACGTGGGGATGCGAGACGCTGGA
GCTGGGGAGGGAGGAGTTCGAGGCGATGGCCGAGGACCAGGGCACGTTTG
AATTGCAGACGCTCGTGCTGGAGGGGATGTTGGGCCCGGGGGGGCTGAGT
GCCGAGGAGGTGGTGGAGAGGATCGTGGGAGAGGGGGCGAGGATGCGCTT
GGACGGGGGCAGCGTGCGGAGGGCGACCACGGCGGCAGTGCAGGTGCATA
TTGGGAATTTGGCGGCGCGGGCATTGTTTGCCGACATGGAGGGGCAGCCC
CAGAAGGCGTTTAAGGAGATTGAGAGCACGTTGCGGTTCATCCAGACGGA
CGCTGAGTTGTTCAGGAAGAAGCTCGGGTGCGAGATCAACCCGACGGCTA
GGATCGCGGATGAGGACGGGCTGCAGCTGGCCAACGTGTGCACCAAGATG
ATAAGTAGGCGGCAGGCTCCCGAGGCAGCCCGGGCGTTCCTGGACATCAT
CGGGTACAGTGACCGCGTGGGCATGTAG

Synonyms

Publications