NO18G02550, NO18G02550 (gene) Nannochloropsis oceanica

Overview
NameNO18G02550
Unique NameNO18G02550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2147
Alignment locationchr18:831583..833729 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:831583..833729 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO18G02550 vs. NCBI_GenBank
Match: XP_005854650.1 (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526] >EKU21707.1 hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 247.7 bits (631), Expect = 4.600e-62
Identity = 114/195 (58.46%), Postives = 147/195 (75.38%), Query Frame = 0
Query:  103 MLTNKAHVEEMKETWSKPDILRFLMDNTPFFKVIKPLRMLMDKEEITPQDGLNAVGIFKDAMIKVLDTIESVRSPEGMAKYMFDYSKLQDERWVIMLARMQRGDKTVQVEIQQYVVDRELGNLIDLDAMGFNGEEPEYIKMVRRTVKNQEPGLWEAVLKEDQLARKYMEEPTAVIKEIQDLTSEYARNIEGMANL 298
            MLTNKAHV+E+K TWS P + RFL D TPF K  KPLR L  KE +TPQDG++AV  FK+AM+KVL TIE+VR PEGMA  MF+YS LQD  WV ++AR+Q G+K  Q+E+QQY++DRELG LIDL+ MGF+G+EP  +K  R TV+ +EP LW+++  ED +ARKYME P  V+K++ DLTSE   N++G   L
Sbjct:    1 MLTNKAHVDELKATWSDPVVFRFLRDQTPFLKAFKPLRPLFSKEALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDPEWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARETVQREEPELWDSIFSEDPIARKYMEAPETVLKDVMDLTSECETNLKGKTTL 195          
BLAST of NO18G02550 vs. NCBI_GenBank
Match: EWM24065.1 (hypothetical protein Naga_100063g14 [Nannochloropsis gaditana])

HSP 1 Score: 122.5 bits (306), Expect = 2.200e-24
Identity = 74/280 (26.43%), Postives = 142/280 (50.71%), Query Frame = 0
Query:   12 SVTRSTATVKKAEIFNTLAKQQRYLQGAQDVEAAVEETEIDHRELDPPPLGSANGDFSVLFESLTTPLVDWQWELAERAFAGDIFGVLKDSMLTNKAHVEEMKETWSKPDILRFLMDNTPFFKVIKPLR-MLMDK---EEITPQDGLNAVGIFKDAMIKVLDTIESVRSPEGMAKYMFDYSKLQDERWVIMLARMQRGDKTVQVEIQQYVVDRELGNLIDLDAMGFNGEEPEYIKMVRRTVKNQEPGLWEAVLKEDQLARKYMEEPTAVIKEIQDLTSEY 288
            S  R     KK  +F  +++         D      +   +    +  P+  A  DF    E       D   ++ + +  GD+   ++D  L N A  +++   W+ P + R L+   P F+  KP++ ++ DK   E+ +P+DG+ A GIFK  M++ +D ++++R PE  A  +  Y++ +D+  + + A+  RG+     EI  + + +ELG++IDLD +GF+G EP ++   R  VK   P ++ A++ +  + +KYME+P   ++E ++L   +
Sbjct:   38 STARKAGGAKKTGLFQRISRALDTGSAMDDDGTPFTDEMWEATRDEGEPVDPALMDFKNPVERTDAWKFDDGLKMLQTSMDGDLTNPVRD--LVNGA--KDLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGDVIDLDFLGFSGVEPSFLPGFRNQVKEFAPNMYNALMTDPNM-KKYMEDPFKAVEEGKELLRNF 312          
BLAST of NO18G02550 vs. NCBI_GenBank
Match: EWM20189.1 (hypothetical protein Naga_101121g1 [Nannochloropsis gaditana])

HSP 1 Score: 108.2 bits (269), Expect = 4.400e-20
Identity = 73/243 (30.04%), Postives = 119/243 (48.97%), Query Frame = 0
Query:   60 PLGSANGDFSVLFESLTTPLVDWQWELAERAFAGDIFGVLKDSMLTNKAHVEEMKETWSKPDILRFLMDNTPFFKVIKPLRML--MDKEEITPQDGLNAVG----IFKDAMIKVLDTIESVRSPEGMAKY----MFDYSKLQDERWVIMLARMQRGDKTVQVEIQQYVVDRELGNLIDLDAMGFNGE-----EPEYIKMVRRTVKNQEPGLWEAVLKEDQLARKYMEEPTAV-IKEIQDLTSE 287
            P  +    FS+L     +   +W  +LA R   GD F VLK+ +L+     ++++  WS P   R L++  P  K++     L   D ++ TP DGL  +       KDAM K ++ I+  +S E + K+    + +  +  D +   +  ++  GD T   E+   V D   G L+D + MGF  E     EPE  K++R  V+ QEP LW+ +  +D    + M +P A  +K IQDLT++
Sbjct:   86 PAATKASSFSILGGEKDSWAEEWDLKLARRLLDGDHFSVLKEMVLS-----KDLEVIWSTPYAARRLLEANPILKMLPGAAALAKKDLDDWTPADGLQILSRLRLFAKDAMEKTMENIDPSKSMESLEKFAHRGLREEHEGGDPKLKALFDKVAAGDDTAAKEVHDVVFDELWGGLVDKEQMGFGKEPGTMFEPEASKIMRDYVRTQEPALWDMMTMDDPFITQLMTDPLATPMKVIQDLTNQ 323          
BLAST of NO18G02550 vs. NCBI_GenBank
Match: XP_005852429.1 (hypothetical protein NGA_0725900 [Nannochloropsis gaditana CCMP526] >EKU23403.1 hypothetical protein NGA_0725900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 96.3 bits (238), Expect = 1.700e-16
Identity = 64/219 (29.22%), Postives = 105/219 (47.95%), Query Frame = 0
Query:   60 PLGSANGDFSVLFESLTTPLVDWQWELAERAFAGDIFGVLKDSMLTNKAHVEEMKETWSKPDILRFLMDNTPFFKVIKPLRML--MDKEEITPQDGLNAVG----IFKDAMIKVLDTIESVRSPEGMAKY----MFDYSKLQDERWVIMLARMQRGDKTVQVEIQQYVVDRELGNLIDLDAMGFNGE-----EPEYIKMVRRTVKNQEPGLWEAVLKED 264
            P  +    FS+L     +   +W  +LA R   GD F VLK+ +L+     ++++  WS P   R L++  P  K++     L   D ++ TP DGL  +       KDAM K ++ I+  +S E + K+    + +  +  D +   +  ++  GD T   E+   V D   G L+D + MGF  E     EPE  K++R  V+ QEP LW+ +  +D
Sbjct:   86 PAATKASSFSILGGEKDSWAEEWDLKLARRLLDGDHFSVLKEMVLS-----KDLEVIWSTPYAARRLLEANPILKMLPGAAALAKKDLDDWTPADGLQILSRLRLFAKDAMEKTMENIDPSKSMESLEKFAHRGLREEHEGGDPKLKALFDKVAAGDDTAAKEVHDVVFDELWGGLVDKEQMGFGKEPGTMFEPEASKIMRDYVRTQEPALWDMMTMDD 299          
BLAST of NO18G02550 vs. NCBI_GenBank
Match: EWM20107.1 (hypothetical protein Naga_101770g1 [Nannochloropsis gaditana])

HSP 1 Score: 93.6 bits (231), Expect = 1.100e-15
Identity = 39/104 (37.50%), Postives = 72/104 (69.23%), Query Frame = 0
Query:  184 MFDYSKLQDERWVIMLARMQRGDKTVQVEIQQYVVDRELGNLIDLDAMGFNGEEPEYIKMVRRTVKNQEPGLWEAVLKEDQLARKYMEEPTAVIKEIQDLTSEY 288
            M++Y+   D +W  +L R+++GDKT  +++QQ+++++E+G+LIDL+A GF G  P+ +     +V+ QEP +W +VL  D +A++Y+E+P   +KE  D+  +Y
Sbjct:    1 MYNYATSTDSKWRSLLERVEKGDKTASLDMQQFLLNKEIGDLIDLEAFGFGGVLPDVLSKAISSVREQEPLIWNSVL-SDPVAKRYLEDPMLAVKEALDVAKDY 103          
BLAST of NO18G02550 vs. NCBI_GenBank
Match: EWM23474.1 (hypothetical protein Naga_101028g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 85.5 bits (210), Expect = 3.000e-13
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = 0
Query:  225 LIDLDAMGFNGEEPEYIKMVRRTVKNQEPGLWEAVLKEDQLARKYMEEPTAVIKEIQDLTSEYARNIEGMANL 298
            +IDL  MGF+G+EP  +K  R TV+ +EP LW+++ +ED +ARKYME P  V+K++ DLTSE+  N++G   L
Sbjct:   91 VIDLKEMGFDGQEPSILKEARETVQREEPELWDSIFREDPIARKYMEAPETVLKDVIDLTSEFETNLKGKTTL 163          
The following BLAST results are available for this feature:
BLAST of NO18G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
XP_005854650.14.600e-6258.46hypothetical protein NGA_0195700 [Nannochloropsis ... [more]
EWM24065.12.200e-2426.43hypothetical protein Naga_100063g14 [Nannochlorops... [more]
EWM20189.14.400e-2030.04hypothetical protein Naga_101121g1 [Nannochloropsi... [more]
XP_005852429.11.700e-1629.22hypothetical protein NGA_0725900 [Nannochloropsis ... [more]
EWM20107.11.100e-1537.50hypothetical protein Naga_101770g1 [Nannochloropsi... [more]
EWM23474.13.000e-1349.32hypothetical protein Naga_101028g3, partial [Nanno... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL011nonsL011Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL010nonsL010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR094ncniR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR042ngnoR042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007343NSK007343Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02550.1NO18G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101028g3gene6978Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02550.1NO18G02550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02550 ID=NO18G02550|Name=NO18G02550|organism=Nannochloropsis oceanica|type=gene|length=2147bp
CTAATTTCTGAATCTGAGGGCAGTGCTTGTTGTTAAGGGAGCCACCTCTG
ACATTAGCCCCAAAACATTTCCCTGTTATCCAGGTCGCACATACACTTAT
CATCGACGGGGAAATTTCCACCTAACCCAACCGTGAAAACACTACAGATA
TTGTTGTATGTCAGTAAGGTCGTTTCCCTCTCCTCCCTCTCCTCTTTCTC
TTTTTTGTTCGTGAAGTCAGCTGGTCTTACCCTCTCTCCCGCTAACCTTT
CCCCCCCGCTTCGCCCTCTTACTACCAAATAGAACTGTCATGCGTTGTTT
TTCCCTCCTCCTCCTCTTCTTGAGCGTGACAAGGTCGACAGCCACTGTCA
AGAAGGCCGAGATTTTCAACACTCTCGCTAAGCAGCAACGATATCTGCAA
GGCGCACAAGACGTGGAGGCAGCAGTGGAAGAAACAGAGATAGACCACAG
AGAGCTGGACCCGCCACCATTAGGAAGCGCCAATGGTGACTTTTCCGTGT
TGTTCGAGTCTTTAACAACCCCCTTGGTAGACTGGCAGTGGGAGCTGGCC
GAACGGGCCTTTGCGGGTGACATTTTCGGGGTGCTCAAGGACAGCATGCT
CACTAACAAGGCGCATGTGGAGGAGATGAAGGAGACCTGGTCCAAGCCTG
ATATTCTGAGGTTTCTGATGGACAACACTCCTTTTTTTAAGGTCATCAAA
CCCCTCCGCATGTTAATGGATAAGGAGGAGATTACGCCCCAAGATgtgag
gagaaggacagcttgagggagtccacagcatccctaagcccgcgtgcaat
ctgactaaaactctcacctatccctccctcctccctccctacctctttct
tcgacatattcagGGCCTGAACGCCGTCGGCATATTCAAGGACGCCATGA
TCAAGGTGTTGGACACTATTGAGTCCGTCCGCAGCCCAGAGGGCATGGCC
AAGTACATGTTCGATTACAGCAAACTGCAGgtacgctttcctctttccct
gcatctcctctctctctctctctgtctttctctctctctctctctctctc
tctctgtctttctctacttctgtctttctctctctctctctctctgtctt
tctctacttctgtctttctctctctatgtctctgtctgtgtctctgtctc
tctgtctctctggctctctggctctctgtctctctgtttctctatctctg
cctttctctctctctctctttttctctctctctcgctctgtgtctctgat
tctctccctctgtttgtctttctctctctgtctctctctctctctgtctg
tctctctctctgtctctctctctgtctctatctctctctctcactctaac
tctccccctccctccctccccctccctctctccccctcatcccttccccc
cgctccattttaatgtcctgcttctgtgctgtcgcttcttgttgcggcaa
catcacgtcaaccatcatgcatgtacttccctatttccgtctcgtctgat
tgttttggtcattcttccctccctccctccctccctccctccctcccctc
agGACGAAAGATGGGTAATCATGCTCGCCCGTATGCAGAGAGGCGATAAG
ACCGTGCAGGTCGAGATCCAGCAGTATGTCGTCGACAGGGAGCTGGGAAA
CTgtacgtgacgagggaatggaggacagaggaagcgcttggtgggggtgc
gggagggctctagcgtagccccgactccctctgtttccgaactggccaga
gcctcacccctcctcccccctccccctctttccttcgtgagTGATCGATC
TGGACGCCATGGGCTTCAATGGCGAGGAACCCGAGTACATAAAGATGGTT
CGCCGCACGGTCAAGAACCAAGAGCCGGGCCTGTGGGAGGCTGTCCTGAA
GGAGGATCAGCTGGCGAGGAAGTATATGGAGGAGCCCACGGCAGTGATCA
AAGAAATTCAAGATTTGACCTCGGAGTATGCGCGGAACATCGAGGGGATG
GCGAATCTCTAAGGAAGGAGGAGAGGAAAAGGGGAGGTAGGAGGGAGGGG
TATGGCTCTGGCCAGTTCGGAAACAGAGGGAGTCGGGGCTACGCTAGAGC
CCTCCCGCACCCCCACCAAGCGCTTCGATCTATAGGGAAGATTCGGA
back to top

protein sequence of NO18G02550.1

>NO18G02550.1-protein ID=NO18G02550.1-protein|Name=NO18G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MRCFSLLLLFLSVTRSTATVKKAEIFNTLAKQQRYLQGAQDVEAAVEETE
IDHRELDPPPLGSANGDFSVLFESLTTPLVDWQWELAERAFAGDIFGVLK
DSMLTNKAHVEEMKETWSKPDILRFLMDNTPFFKVIKPLRMLMDKEEITP
QDGLNAVGIFKDAMIKVLDTIESVRSPEGMAKYMFDYSKLQDERWVIMLA
RMQRGDKTVQVEIQQYVVDRELGNLIDLDAMGFNGEEPEYIKMVRRTVKN
QEPGLWEAVLKEDQLARKYMEEPTAVIKEIQDLTSEYARNIEGMANL*
back to top
Synonyms
Publications