NO18G02550.1, NO18G02550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G02550.1
Unique NameNO18G02550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1318
Alignment locationchr18:831583..833729 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:831583..833729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G02550.1 vs.
Match: XP_005854650.1 (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526]; EKU21707.1 hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 247.7 bits (631), Expect = 4.600e-62
Identity = 114/195 (58.46%), Postives = 147/195 (75.38%), Query Frame = 0 
Query:  103 MLTNKAHVEEMKETWSKPDILRFLMDNTPFFKVIKPLRMLMDKEEITPQDGLNAVGIFKDAMIKVLDTIESVRSPEGMAKYMFDYSKLQDERWVIMLARMQRGDKTVQVEIQQYVVDRELGNLIDLDAMGFNGEEPEYIKMVRRTVKNQEPGLWEAVLKEDQLARKYMEEPTAVIKEIQDLTSEYARNIEGMANL 298
            MLTNKAHV+E+K TWS P + RFL D TPF K  KPLR L  KE +TPQDG++AV  FK+AM+KVL TIE+VR PEGMA  MF+YS LQD  WV ++AR+Q G+K  Q+E+QQY++DRELG LIDL+ MGF+G+EP  +K  R TV+ +EP LW+++  ED +ARKYME P  V+K++ DLTSE   N++G   L
Sbjct:    1 MLTNKAHVDELKATWSDPVVFRFLRDQTPFLKAFKPLRPLFSKEALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDPEWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARETVQREEPELWDSIFSEDPIARKYMEAPETVLKDVMDLTSECETNLKGKTTL 195
The following BLAST results are available for this feature:
BLAST of NO18G02550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854650.14.600e-6258.46hypothetical protein NGA_0195700 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G02550NO18G02550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G02550.1NO18G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G02550.1.cds1NO18G02550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02550.1.cds2NO18G02550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02550.1.cds3NO18G02550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G02550.1.cds4NO18G02550.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G02550.1 ID=NO18G02550.1|Name=NO18G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1318bp
CTAATTTCTGAATCTGAGGGCAGTGCTTGTTGTTAAGGGAGCCACCTCTG
ACATTAGCCCCAAAACATTTCCCTGTTATCCAGGTCGCACATACACTTAT
CATCGACGGGGAAATTTCCACCTAACCCAACCGTGAAAACACTACAGATA
TTGTTGTATGTCAGTAAGGTCGTTTCCCTCTCCTCCCTCTCCTCTTTCTC
TTTTTTGTTCGTGAAGTCAGCTGGTCTTACCCTCTCTCCCGCTAACCTTT
CCCCCCCGCTTCGCCCTCTTACTACCAAATAGAACTGTCATGCGTTGTTT
TTCCCTCCTCCTCCTCTTCTTGAGCGTGACAAGGTCGACAGCCACTGTCA
AGAAGGCCGAGATTTTCAACACTCTCGCTAAGCAGCAACGATATCTGCAA
GGCGCACAAGACGTGGAGGCAGCAGTGGAAGAAACAGAGATAGACCACAG
AGAGCTGGACCCGCCACCATTAGGAAGCGCCAATGGTGACTTTTCCGTGT
TGTTCGAGTCTTTAACAACCCCCTTGGTAGACTGGCAGTGGGAGCTGGCC
GAACGGGCCTTTGCGGGTGACATTTTCGGGGTGCTCAAGGACAGCATGCT
CACTAACAAGGCGCATGTGGAGGAGATGAAGGAGACCTGGTCCAAGCCTG
ATATTCTGAGGTTTCTGATGGACAACACTCCTTTTTTTAAGGTCATCAAA
CCCCTCCGCATGTTAATGGATAAGGAGGAGATTACGCCCCAAGATGGCCT
GAACGCCGTCGGCATATTCAAGGACGCCATGATCAAGGTGTTGGACACTA
TTGAGTCCGTCCGCAGCCCAGAGGGCATGGCCAAGTACATGTTCGATTAC
AGCAAACTGCAGGACGAAAGATGGGTAATCATGCTCGCCCGTATGCAGAG
AGGCGATAAGACCGTGCAGGTCGAGATCCAGCAGTATGTCGTCGACAGGG
AGCTGGGAAACTTGATCGATCTGGACGCCATGGGCTTCAATGGCGAGGAA
CCCGAGTACATAAAGATGGTTCGCCGCACGGTCAAGAACCAAGAGCCGGG
CCTGTGGGAGGCTGTCCTGAAGGAGGATCAGCTGGCGAGGAAGTATATGG
AGGAGCCCACGGCAGTGATCAAAGAAATTCAAGATTTGACCTCGGAGTAT
GCGCGGAACATCGAGGGGATGGCGAATCTCTAAGGAAGGAGGAGAGGAAA
AGGGGAGGTAGGAGGGAGGGGTATGGCTCTGGCCAGTTCGGAAACAGAGG
GAGTCGGGGCTACGCTAGAGCCCTCCCGCACCCCCACCAAGCGCTTCGAT
CTATAGGGAAGATTCGGA
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protein sequence of NO18G02550.1

>NO18G02550.1-protein ID=NO18G02550.1-protein|Name=NO18G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MRCFSLLLLFLSVTRSTATVKKAEIFNTLAKQQRYLQGAQDVEAAVEETE
IDHRELDPPPLGSANGDFSVLFESLTTPLVDWQWELAERAFAGDIFGVLK
DSMLTNKAHVEEMKETWSKPDILRFLMDNTPFFKVIKPLRMLMDKEEITP
QDGLNAVGIFKDAMIKVLDTIESVRSPEGMAKYMFDYSKLQDERWVIMLA
RMQRGDKTVQVEIQQYVVDRELGNLIDLDAMGFNGEEPEYIKMVRRTVKN
QEPGLWEAVLKEDQLARKYMEEPTAVIKEIQDLTSEYARNIEGMANL*
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mRNA from alignment at chr18:831583..833729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02550.1 ID=NO18G02550.1|Name=NO18G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2147bp|location=Sequence derived from alignment at chr18:831583..833729- (Nannochloropsis oceanica)
CTAATTTCTGAATCTGAGGGCAGTGCTTGTTGTTAAGGGAGCCACCTCTG
ACATTAGCCCCAAAACATTTCCCTGTTATCCAGGTCGCACATACACTTAT
CATCGACGGGGAAATTTCCACCTAACCCAACCGTGAAAACACTACAGATA
TTGTTGTATGTCAGTAAGGTCGTTTCCCTCTCCTCCCTCTCCTCTTTCTC
TTTTTTGTTCGTGAAGTCAGCTGGTCTTACCCTCTCTCCCGCTAACCTTT
CCCCCCCGCTTCGCCCTCTTACTACCAAATAGAACTGTCATGCGTTGTTT
TTCCCTCCTCCTCCTCTTCTTGAGCGTGACAAGGTCGACAGCCACTGTCA
AGAAGGCCGAGATTTTCAACACTCTCGCTAAGCAGCAACGATATCTGCAA
GGCGCACAAGACGTGGAGGCAGCAGTGGAAGAAACAGAGATAGACCACAG
AGAGCTGGACCCGCCACCATTAGGAAGCGCCAATGGTGACTTTTCCGTGT
TGTTCGAGTCTTTAACAACCCCCTTGGTAGACTGGCAGTGGGAGCTGGCC
GAACGGGCCTTTGCGGGTGACATTTTCGGGGTGCTCAAGGACAGCATGCT
CACTAACAAGGCGCATGTGGAGGAGATGAAGGAGACCTGGTCCAAGCCTG
ATATTCTGAGGTTTCTGATGGACAACACTCCTTTTTTTAAGGTCATCAAA
CCCCTCCGCATGTTAATGGATAAGGAGGAGATTACGCCCCAAGATGTGAG
GAGAAGGACAGCTTGAGGGAGTCCACAGCATCCCTAAGCCCGCGTGCAAT
CTGACTAAAACTCTCACCTATCCCTCCCTCCTCCCTCCCTACCTCTTTCT
TCGACATATTCAGGGCCTGAACGCCGTCGGCATATTCAAGGACGCCATGA
TCAAGGTGTTGGACACTATTGAGTCCGTCCGCAGCCCAGAGGGCATGGCC
AAGTACATGTTCGATTACAGCAAACTGCAGGTACGCTTTCCTCTTTCCCT
GCATCTCCTCTCTCTCTCTCTCTGTCTTTCTCTCTCTCTCTCTCTCTCTC
TCTCTGTCTTTCTCTACTTCTGTCTTTCTCTCTCTCTCTCTCTCTGTCTT
TCTCTACTTCTGTCTTTCTCTCTCTATGTCTCTGTCTGTGTCTCTGTCTC
TCTGTCTCTCTGGCTCTCTGGCTCTCTGTCTCTCTGTTTCTCTATCTCTG
CCTTTCTCTCTCTCTCTCTTTTTCTCTCTCTCTCGCTCTGTGTCTCTGAT
TCTCTCCCTCTGTTTGTCTTTCTCTCTCTGTCTCTCTCTCTCTCTGTCTG
TCTCTCTCTCTGTCTCTCTCTCTGTCTCTATCTCTCTCTCTCACTCTAAC
TCTCCCCCTCCCTCCCTCCCCCTCCCTCTCTCCCCCTCATCCCTTCCCCC
CGCTCCATTTTAATGTCCTGCTTCTGTGCTGTCGCTTCTTGTTGCGGCAA
CATCACGTCAACCATCATGCATGTACTTCCCTATTTCCGTCTCGTCTGAT
TGTTTTGGTCATTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTC
AGGACGAAAGATGGGTAATCATGCTCGCCCGTATGCAGAGAGGCGATAAG
ACCGTGCAGGTCGAGATCCAGCAGTATGTCGTCGACAGGGAGCTGGGAAA
CTGTACGTGACGAGGGAATGGAGGACAGAGGAAGCGCTTGGTGGGGGTGC
GGGAGGGCTCTAGCGTAGCCCCGACTCCCTCTGTTTCCGAACTGGCCAGA
GCCTCACCCCTCCTCCCCCCTCCCCCTCTTTCCTTCGTGAGTGATCGATC
TGGACGCCATGGGCTTCAATGGCGAGGAACCCGAGTACATAAAGATGGTT
CGCCGCACGGTCAAGAACCAAGAGCCGGGCCTGTGGGAGGCTGTCCTGAA
GGAGGATCAGCTGGCGAGGAAGTATATGGAGGAGCCCACGGCAGTGATCA
AAGAAATTCAAGATTTGACCTCGGAGTATGCGCGGAACATCGAGGGGATG
GCGAATCTCTAAGGAAGGAGGAGAGGAAAAGGGGAGGTAGGAGGGAGGGG
TATGGCTCTGGCCAGTTCGGAAACAGAGGGAGTCGGGGCTACGCTAGAGC
CCTCCCGCACCCCCACCAAGCGCTTCGATCTATAGGGAAGATTCGGA
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Coding sequence (CDS) from alignment at chr18:831583..833729-

>NO18G02550.1 ID=NO18G02550.1|Name=NO18G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr18:831583..833729- (Nannochloropsis oceanica)
ATGCGTTGTTTTTCCCTCCTCCTCCTCTTCTTGAGCGTGACAAGGTCGAC
AGCCACTGTCAAGAAGGCCGAGATTTTCAACACTCTCGCTAAGCAGCAAC
GATATCTGCAAGGCGCACAAGACGTGGAGGCAGCAGTGGAAGAAACAGAG
ATAGACCACAGAGAGCTGGACCCGCCACCATTAGGAAGCGCCAATGGTGA
CTTTTCCGTGTTGTTCGAGTCTTTAACAACCCCCTTGGTAGACTGGCAGT
GGGAGCTGGCCGAACGGGCCTTTGCGGGTGACATTTTCGGGGTGCTCAAG
GACAGCATGCTCACTAACAAGGCGCATGTGGAGGAGATGAAGGAGACCTG
GTCCAAGCCTGATATTCTGAGGTTTCTGATGGACAACACTCCTTTTTTTA
AGGTCATCAAACCCCTCCGCATGTTAATGGATAAGGAGGAGATTACGCCC
CAAGATGGCCTGAACGCCGTCGGCATATTCAAGGACGCCATGATCAAGGT
GTTGGACACTATTGAGTCCGTCCGCAGCCCAGAGGGCATGGCCAAGTACA
TGTTCGATTACAGCAAACTGCAGGACGAAAGATGGGTAATCATGCTCGCC
CGTATGCAGAGAGGCGATAAGACCGTGCAGGTCGAGATCCAGCAGTATGT
CGTCGACAGGGAGCTGGGAAACTTGATCGATCTGGACGCCATGGGCTTCA
ATGGCGAGGAACCCGAGTACATAAAGATGGTTCGCCGCACGGTCAAGAAC
CAAGAGCCGGGCCTGTGGGAGGCTGTCCTGAAGGAGGATCAGCTGGCGAG
GAAGTATATGGAGGAGCCCACGGCAGTGATCAAAGAAATTCAAGATTTGA
CCTCGGAGTATGCGCGGAACATCGAGGGGATGGCGAATCTCTAA
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Synonyms
Publications