NO18G01920, NO18G01920 (gene) Nannochloropsis oceanica

Overview
NameNO18G01920
Unique NameNO18G01920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1940
Alignment locationchr18:593214..595153 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:593214..595153 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G01920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01920.1NO18G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604361gene_8882Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100189g12gene7059Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01920.1NO18G01920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01920 ID=NO18G01920|Name=NO18G01920|organism=Nannochloropsis oceanica|type=gene|length=1940bp
ATGGAAGGCTGGTCGATGGAGAATGGAATATGGCACCACTTTGCGGATTA
TTGCGCAGCAAGGGGGATGAAGGTGGATACCTGTGTTTTTGATTTCAGAA
TGGAAATGGAGCAGAAGGAGAGGATGAGGAAGGGAGGAAGGCGGCCGATG
ATGCGGCCGCCGGGTAAGGGTAAGGTGGAGGGGAATGGGGAAGGTGGAAG
AGGAGGAGGGGATGGGAAGATTGAGAGGAAGAGGGACGACGGAGAGGGAA
TGAAGGAGGGAAAGAGGGAGAGGCAGACCAAGAAAATGGAAGGGAAGAGA
GTGGGAGAGGTAGAGTCGAAGGGGAAGGATAAGAGGGAAGGGGGAGAAGG
AGCTGTAGTGCTAGATCAGGAGGAGCGGATGGAGGGAGGGATGCAAGTTG
AGGAGGCGGGAGCGCCTAATTTTTTGAGTAGAACGGCAGCAGTCGCAGCA
GCAGGAACAACAGAAGCAGCAGTAGCAGGAGGAGATGGAAGAGGAGGAAG
AGGAGAGGAAGGGGGAGAAAAAAGAGATGGAGGGGAGAGAAGAGGAGGAG
GGTTAGAAGAAGGAGTAGGAGGAGgtacgtacacttgtagtccgtttccc
tccaccgtgcttgtgttgggagggggggagcagGAGGAGTAGGAGTAGGA
GGAGGAGGAGGAGGAGCATCGAGCTGTGAAAGTGTTGGTGCCCAGCAGCA
ACAACAGCGACAACAGGACGAGGGAGACCAGCAACAGCAGCCGCAGGAGG
AGTCTCTTCAGGTAGCAGTTGAGAAAGTCAACAATCGGTTGCTCCAGCGC
GTGTGCACCCTCCTCTCCTTCTCCTCCTCCTCCTTCAACGCCCCCTCCTC
CCTCTCTCCCTCCCTCCCTCGCTTTCTCTCCAGCCGAATGACAGTGCGTG
CGGTGTGTGTTAAAGAGAAAGAGGGAGGTAAAGAGGTGGAGGTACGACCG
TTGCGCTTACTATCACTGGAGCCTCCGCTGATTTTATTTCCGGCGTCTGT
GCAGCTGGGATCGACGAAGGGGGGAAGACCGCATGGGAAGAAGGATGTGG
AGGCGACGATGACTCTGGGTGTATATAAGCAGACAGAGAAGGAGAAAGGA
GGAGAGGAATGGAATGGAGGAATCAATGGTAGTGGGACGAGCGGGAGCCG
CCTCTGCAGGGGGCTTTTTACTTCCTCTCCCAACGTTGCGTCCGCCCCCC
CTTTTGGCATTGTGCATGTGGATGCGGGGGAGGAGCGAGAGGGAGGGAAT
GAGGAAGGGGCGTGTATAGGGAAGGGTTGTGCGGTGGAGGAAGTGGCTGT
GTCAGTGTTTGAGTTCGGGCCCGGTCGCTTCTTGACACTCTCTCTTTTTT
TGGTGGGAAAGACGAGCACGAGGAAGGGAGGGAGTTCGAGGAGGAGGGAT
GAAGAGGAGTTAGATGCGGATGCGCGGTTTGTGGCCACATACCTGTTGAG
CTCTCATGTTGATGATGCCAGCAACAGCAGGAGAACCATTACCCTCCTCT
CTTCTTCTTTTTCTTCTCCTCTTCCTTCTTCTACTCCTCCTACTTCTTCT
CCTTCTCTCCCAGGCCATGCTCCCGTCTTCCTTGATGATACCGCCGTCAT
TCAAGCAAAAAATGCCTCCTTTCTTCCCTCTTCTTCATTCTTGTCCTCTT
CTTTCATCCAAAAAGAAGATCTTGGTGTTCTACGCTTTTGGGGGCAGACG
AAGGAGCAGCAAGCGCAGCAGGAGCAGCAAGTGCAGCAGAAGCAGCAACA
GCAGCAGGAGGTGGCATCGCTGAATCTAAAGACATTAGGTGATGTGCTGC
GACAGTCCTTAGTCATGCCATTGGGGGAATTTGTGGCCATGACGGGAGGA
AGGGGAGAGGGGGAAGGGGGAAAGGAAGAGCATCGGCACCAGCACCAGGA
GGAGCACGATGTTGGGCTGCTGACAGTGGAGGAAATCTAG
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protein sequence of NO18G01920.1

>NO18G01920.1-protein ID=NO18G01920.1-protein|Name=NO18G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MEGWSMENGIWHHFADYCAARGMKVDTCVFDFRMEMEQKERMRKGGRRPM
MRPPGKGKVEGNGEGGRGGGDGKIERKRDDGEGMKEGKRERQTKKMEGKR
VGEVESKGKDKREGGEGAVVLDQEERMEGGMQVEEAGAPNFLSRTAAVAA
AGTTEAAVAGGDGRGGRGEEGGEKRDGGERRGGGLEEGVGGGGVGVGGGG
GGASSCESVGAQQQQQRQQDEGDQQQQPQEESLQVAVEKVNNRLLQRVCT
LLSFSSSSFNAPSSLSPSLPRFLSSRMTVRAVCVKEKEGGKEVEVRPLRL
LSLEPPLILFPASVQLGSTKGGRPHGKKDVEATMTLGVYKQTEKEKGGEE
WNGGINGSGTSGSRLCRGLFTSSPNVASAPPFGIVHVDAGEEREGGNEEG
ACIGKGCAVEEVAVSVFEFGPGRFLTLSLFLVGKTSTRKGGSSRRRDEEE
LDADARFVATYLLSSHVDDASNSRRTITLLSSSFSSPLPSSTPPTSSPSL
PGHAPVFLDDTAVIQAKNASFLPSSSFLSSSFIQKEDLGVLRFWGQTKEQ
QAQQEQQVQQKQQQQQEVASLNLKTLGDVLRQSLVMPLGEFVAMTGGRGE
GEGGKEEHRHQHQEEHDVGLLTVEEI*
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Synonyms
Publications