NO18G01920.1, NO18G01920.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G01920.1
Unique Name	NO18G01920.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1881
Alignment location	chr18:593214..595153 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:593214..595153 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO18G01920.1 vs.

BLAST of NO18G01920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G01920	NO18G01920	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01920.1	NO18G01920.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G01920.1.cds1	NO18G01920.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G01920.1.cds2	NO18G01920.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:593214..595153-
coding sequence from alignment at chr18:593214..595153-

mRNA sequence

>NO18G01920.1 ID=NO18G01920.1|Name=NO18G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp
ATGGAAGGCTGGTCGATGGAGAATGGAATATGGCACCACTTTGCGGATTA
TTGCGCAGCAAGGGGGATGAAGGTGGATACCTGTGTTTTTGATTTCAGAA
TGGAAATGGAGCAGAAGGAGAGGATGAGGAAGGGAGGAAGGCGGCCGATG
ATGCGGCCGCCGGGTAAGGGTAAGGTGGAGGGGAATGGGGAAGGTGGAAG
AGGAGGAGGGGATGGGAAGATTGAGAGGAAGAGGGACGACGGAGAGGGAA
TGAAGGAGGGAAAGAGGGAGAGGCAGACCAAGAAAATGGAAGGGAAGAGA
GTGGGAGAGGTAGAGTCGAAGGGGAAGGATAAGAGGGAAGGGGGAGAAGG
AGCTGTAGTGCTAGATCAGGAGGAGCGGATGGAGGGAGGGATGCAAGTTG
AGGAGGCGGGAGCGCCTAATTTTTTGAGTAGAACGGCAGCAGTCGCAGCA
GCAGGAACAACAGAAGCAGCAGTAGCAGGAGGAGATGGAAGAGGAGGAAG
AGGAGAGGAAGGGGGAGAAAAAAGAGATGGAGGGGAGAGAAGAGGAGGAG
GGTTAGAAGAAGGAGTAGGAGGAGGAGGAGTAGGAGTAGGAGGAGGAGGA
GGAGGAGCATCGAGCTGTGAAAGTGTTGGTGCCCAGCAGCAACAACAGCG
ACAACAGGACGAGGGAGACCAGCAACAGCAGCCGCAGGAGGAGTCTCTTC
AGGTAGCAGTTGAGAAAGTCAACAATCGGTTGCTCCAGCGCGTGTGCACC
CTCCTCTCCTTCTCCTCCTCCTCCTTCAACGCCCCCTCCTCCCTCTCTCC
CTCCCTCCCTCGCTTTCTCTCCAGCCGAATGACAGTGCGTGCGGTGTGTG
TTAAAGAGAAAGAGGGAGGTAAAGAGGTGGAGGTACGACCGTTGCGCTTA
CTATCACTGGAGCCTCCGCTGATTTTATTTCCGGCGTCTGTGCAGCTGGG
ATCGACGAAGGGGGGAAGACCGCATGGGAAGAAGGATGTGGAGGCGACGA
TGACTCTGGGTGTATATAAGCAGACAGAGAAGGAGAAAGGAGGAGAGGAA
TGGAATGGAGGAATCAATGGTAGTGGGACGAGCGGGAGCCGCCTCTGCAG
GGGGCTTTTTACTTCCTCTCCCAACGTTGCGTCCGCCCCCCCTTTTGGCA
TTGTGCATGTGGATGCGGGGGAGGAGCGAGAGGGAGGGAATGAGGAAGGG
GCGTGTATAGGGAAGGGTTGTGCGGTGGAGGAAGTGGCTGTGTCAGTGTT
TGAGTTCGGGCCCGGTCGCTTCTTGACACTCTCTCTTTTTTTGGTGGGAA
AGACGAGCACGAGGAAGGGAGGGAGTTCGAGGAGGAGGGATGAAGAGGAG
TTAGATGCGGATGCGCGGTTTGTGGCCACATACCTGTTGAGCTCTCATGT
TGATGATGCCAGCAACAGCAGGAGAACCATTACCCTCCTCTCTTCTTCTT
TTTCTTCTCCTCTTCCTTCTTCTACTCCTCCTACTTCTTCTCCTTCTCTC
CCAGGCCATGCTCCCGTCTTCCTTGATGATACCGCCGTCATTCAAGCAAA
AAATGCCTCCTTTCTTCCCTCTTCTTCATTCTTGTCCTCTTCTTTCATCC
AAAAAGAAGATCTTGGTGTTCTACGCTTTTGGGGGCAGACGAAGGAGCAG
CAAGCGCAGCAGGAGCAGCAAGTGCAGCAGAAGCAGCAACAGCAGCAGGA
GGTGGCATCGCTGAATCTAAAGACATTAGGTGATGTGCTGCGACAGTCCT
TAGTCATGCCATTGGGGGAATTTGTGGCCATGACGGGAGGAAGGGGAGAG
GGGGAAGGGGGAAAGGAAGAGCATCGGCACCAGCACCAGGAGGAGCACGA
TGTTGGGCTGCTGACAGTGGAGGAAATCTAG

protein sequence of NO18G01920.1

>NO18G01920.1-protein ID=NO18G01920.1-protein|Name=NO18G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MEGWSMENGIWHHFADYCAARGMKVDTCVFDFRMEMEQKERMRKGGRRPM
MRPPGKGKVEGNGEGGRGGGDGKIERKRDDGEGMKEGKRERQTKKMEGKR
VGEVESKGKDKREGGEGAVVLDQEERMEGGMQVEEAGAPNFLSRTAAVAA
AGTTEAAVAGGDGRGGRGEEGGEKRDGGERRGGGLEEGVGGGGVGVGGGG
GGASSCESVGAQQQQQRQQDEGDQQQQPQEESLQVAVEKVNNRLLQRVCT
LLSFSSSSFNAPSSLSPSLPRFLSSRMTVRAVCVKEKEGGKEVEVRPLRL
LSLEPPLILFPASVQLGSTKGGRPHGKKDVEATMTLGVYKQTEKEKGGEE
WNGGINGSGTSGSRLCRGLFTSSPNVASAPPFGIVHVDAGEEREGGNEEG
ACIGKGCAVEEVAVSVFEFGPGRFLTLSLFLVGKTSTRKGGSSRRRDEEE
LDADARFVATYLLSSHVDDASNSRRTITLLSSSFSSPLPSSTPPTSSPSL
PGHAPVFLDDTAVIQAKNASFLPSSSFLSSSFIQKEDLGVLRFWGQTKEQ
QAQQEQQVQQKQQQQQEVASLNLKTLGDVLRQSLVMPLGEFVAMTGGRGE
GEGGKEEHRHQHQEEHDVGLLTVEEI*

mRNA from alignment at chr18:593214..595153-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G01920.1 ID=NO18G01920.1|Name=NO18G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1940bp|location=Sequence derived from alignment at chr18:593214..595153- (Nannochloropsis oceanica)
ATGGAAGGCTGGTCGATGGAGAATGGAATATGGCACCACTTTGCGGATTA
TTGCGCAGCAAGGGGGATGAAGGTGGATACCTGTGTTTTTGATTTCAGAA
TGGAAATGGAGCAGAAGGAGAGGATGAGGAAGGGAGGAAGGCGGCCGATG
ATGCGGCCGCCGGGTAAGGGTAAGGTGGAGGGGAATGGGGAAGGTGGAAG
AGGAGGAGGGGATGGGAAGATTGAGAGGAAGAGGGACGACGGAGAGGGAA
TGAAGGAGGGAAAGAGGGAGAGGCAGACCAAGAAAATGGAAGGGAAGAGA
GTGGGAGAGGTAGAGTCGAAGGGGAAGGATAAGAGGGAAGGGGGAGAAGG
AGCTGTAGTGCTAGATCAGGAGGAGCGGATGGAGGGAGGGATGCAAGTTG
AGGAGGCGGGAGCGCCTAATTTTTTGAGTAGAACGGCAGCAGTCGCAGCA
GCAGGAACAACAGAAGCAGCAGTAGCAGGAGGAGATGGAAGAGGAGGAAG
AGGAGAGGAAGGGGGAGAAAAAAGAGATGGAGGGGAGAGAAGAGGAGGAG
GGTTAGAAGAAGGAGTAGGAGGAGGTACGTACACTTGTAGTCCGTTTCCC
TCCACCGTGCTTGTGTTGGGAGGGGGGGAGCAGGAGGAGTAGGAGTAGGA
GGAGGAGGAGGAGGAGCATCGAGCTGTGAAAGTGTTGGTGCCCAGCAGCA
ACAACAGCGACAACAGGACGAGGGAGACCAGCAACAGCAGCCGCAGGAGG
AGTCTCTTCAGGTAGCAGTTGAGAAAGTCAACAATCGGTTGCTCCAGCGC
GTGTGCACCCTCCTCTCCTTCTCCTCCTCCTCCTTCAACGCCCCCTCCTC
CCTCTCTCCCTCCCTCCCTCGCTTTCTCTCCAGCCGAATGACAGTGCGTG
CGGTGTGTGTTAAAGAGAAAGAGGGAGGTAAAGAGGTGGAGGTACGACCG
TTGCGCTTACTATCACTGGAGCCTCCGCTGATTTTATTTCCGGCGTCTGT
GCAGCTGGGATCGACGAAGGGGGGAAGACCGCATGGGAAGAAGGATGTGG
AGGCGACGATGACTCTGGGTGTATATAAGCAGACAGAGAAGGAGAAAGGA
GGAGAGGAATGGAATGGAGGAATCAATGGTAGTGGGACGAGCGGGAGCCG
CCTCTGCAGGGGGCTTTTTACTTCCTCTCCCAACGTTGCGTCCGCCCCCC
CTTTTGGCATTGTGCATGTGGATGCGGGGGAGGAGCGAGAGGGAGGGAAT
GAGGAAGGGGCGTGTATAGGGAAGGGTTGTGCGGTGGAGGAAGTGGCTGT
GTCAGTGTTTGAGTTCGGGCCCGGTCGCTTCTTGACACTCTCTCTTTTTT
TGGTGGGAAAGACGAGCACGAGGAAGGGAGGGAGTTCGAGGAGGAGGGAT
GAAGAGGAGTTAGATGCGGATGCGCGGTTTGTGGCCACATACCTGTTGAG
CTCTCATGTTGATGATGCCAGCAACAGCAGGAGAACCATTACCCTCCTCT
CTTCTTCTTTTTCTTCTCCTCTTCCTTCTTCTACTCCTCCTACTTCTTCT
CCTTCTCTCCCAGGCCATGCTCCCGTCTTCCTTGATGATACCGCCGTCAT
TCAAGCAAAAAATGCCTCCTTTCTTCCCTCTTCTTCATTCTTGTCCTCTT
CTTTCATCCAAAAAGAAGATCTTGGTGTTCTACGCTTTTGGGGGCAGACG
AAGGAGCAGCAAGCGCAGCAGGAGCAGCAAGTGCAGCAGAAGCAGCAACA
GCAGCAGGAGGTGGCATCGCTGAATCTAAAGACATTAGGTGATGTGCTGC
GACAGTCCTTAGTCATGCCATTGGGGGAATTTGTGGCCATGACGGGAGGA
AGGGGAGAGGGGGAAGGGGGAAAGGAAGAGCATCGGCACCAGCACCAGGA
GGAGCACGATGTTGGGCTGCTGACAGTGGAGGAAATCTAG

Coding sequence (CDS) from alignment at chr18:593214..595153-

>NO18G01920.1 ID=NO18G01920.1|Name=NO18G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=1881bp|location=Sequence derived from alignment at chr18:593214..595153- (Nannochloropsis oceanica)
ATGGAAGGCTGGTCGATGGAGAATGGAATATGGCACCACTTTGCGGATTA
TTGCGCAGCAAGGGGGATGAAGGTGGATACCTGTGTTTTTGATTTCAGAA
TGGAAATGGAGCAGAAGGAGAGGATGAGGAAGGGAGGAAGGCGGCCGATG
ATGCGGCCGCCGGGTAAGGGTAAGGTGGAGGGGAATGGGGAAGGTGGAAG
AGGAGGAGGGGATGGGAAGATTGAGAGGAAGAGGGACGACGGAGAGGGAA
TGAAGGAGGGAAAGAGGGAGAGGCAGACCAAGAAAATGGAAGGGAAGAGA
GTGGGAGAGGTAGAGTCGAAGGGGAAGGATAAGAGGGAAGGGGGAGAAGG
AGCTGTAGTGCTAGATCAGGAGGAGCGGATGGAGGGAGGGATGCAAGTTG
AGGAGGCGGGAGCGCCTAATTTTTTGAGTAGAACGGCAGCAGTCGCAGCA
GCAGGAACAACAGAAGCAGCAGTAGCAGGAGGAGATGGAAGAGGAGGAAG
AGGAGAGGAAGGGGGAGAAAAAAGAGATGGAGGGGAGAGAAGAGGAGGAG
GGTTAGAAGAAGGAGTAGGAGGAGGAGGAGTAGGAGTAGGAGGAGGAGGA
GGAGGAGCATCGAGCTGTGAAAGTGTTGGTGCCCAGCAGCAACAACAGCG
ACAACAGGACGAGGGAGACCAGCAACAGCAGCCGCAGGAGGAGTCTCTTC
AGGTAGCAGTTGAGAAAGTCAACAATCGGTTGCTCCAGCGCGTGTGCACC
CTCCTCTCCTTCTCCTCCTCCTCCTTCAACGCCCCCTCCTCCCTCTCTCC
CTCCCTCCCTCGCTTTCTCTCCAGCCGAATGACAGTGCGTGCGGTGTGTG
TTAAAGAGAAAGAGGGAGGTAAAGAGGTGGAGGTACGACCGTTGCGCTTA
CTATCACTGGAGCCTCCGCTGATTTTATTTCCGGCGTCTGTGCAGCTGGG
ATCGACGAAGGGGGGAAGACCGCATGGGAAGAAGGATGTGGAGGCGACGA
TGACTCTGGGTGTATATAAGCAGACAGAGAAGGAGAAAGGAGGAGAGGAA
TGGAATGGAGGAATCAATGGTAGTGGGACGAGCGGGAGCCGCCTCTGCAG
GGGGCTTTTTACTTCCTCTCCCAACGTTGCGTCCGCCCCCCCTTTTGGCA
TTGTGCATGTGGATGCGGGGGAGGAGCGAGAGGGAGGGAATGAGGAAGGG
GCGTGTATAGGGAAGGGTTGTGCGGTGGAGGAAGTGGCTGTGTCAGTGTT
TGAGTTCGGGCCCGGTCGCTTCTTGACACTCTCTCTTTTTTTGGTGGGAA
AGACGAGCACGAGGAAGGGAGGGAGTTCGAGGAGGAGGGATGAAGAGGAG
TTAGATGCGGATGCGCGGTTTGTGGCCACATACCTGTTGAGCTCTCATGT
TGATGATGCCAGCAACAGCAGGAGAACCATTACCCTCCTCTCTTCTTCTT
TTTCTTCTCCTCTTCCTTCTTCTACTCCTCCTACTTCTTCTCCTTCTCTC
CCAGGCCATGCTCCCGTCTTCCTTGATGATACCGCCGTCATTCAAGCAAA
AAATGCCTCCTTTCTTCCCTCTTCTTCATTCTTGTCCTCTTCTTTCATCC
AAAAAGAAGATCTTGGTGTTCTACGCTTTTGGGGGCAGACGAAGGAGCAG
CAAGCGCAGCAGGAGCAGCAAGTGCAGCAGAAGCAGCAACAGCAGCAGGA
GGTGGCATCGCTGAATCTAAAGACATTAGGTGATGTGCTGCGACAGTCCT
TAGTCATGCCATTGGGGGAATTTGTGGCCATGACGGGAGGAAGGGGAGAG
GGGGAAGGGGGAAAGGAAGAGCATCGGCACCAGCACCAGGAGGAGCACGA
TGTTGGGCTGCTGACAGTGGAGGAAATCTAG

Synonyms

Publications