NO18G01830, NO18G01830 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G01830 vs. NCBI_GenBank
Match: EWM23388.1 (hypothetical protein Naga_100189g4 [Nannochloropsis gaditana]) HSP 1 Score: 269.2 bits (687), Expect = 1.000e-68 Identity = 146/214 (68.22%), Postives = 165/214 (77.10%), Query Frame = 0 Query: 1 MRVIASFLCLVAACSAFQIPMAPRGRSNMAPQMLGNFFTPKKAPLPESSTPTPIKAG-KANAG--RLNLKSIPKEAPPTPKKRTFTSAGV-----KLPAFSFGAKKPAASAEPTARVVNGKLQGYFTNEQIESLEVARREVPSSAPSYWKKIAARVPGQTPETCKAMVNQILLDKARGTGKQFFGGYVEVKETKMVVDTEATVGKRFKAAFGIK 207 MRVIAS L L A C+AFQ P+ RGRS APQMLGNFF K P ++TP K G KA G RLNLKSIPKEAPP PKK +AG+ K+P+F F + + E TARVVNGKL+GYFTNEQ+++LEVARREVPSSA SYW+KIA++VPGQT ETCKAM NQ+LLDKARGTGK FFGGYVEVKETKMVVDTEATVGKR KAAFG+K Sbjct: 7 MRVIASLLLLAAVCNAFQAPIVSRGRSRQAPQMLGNFF---KTAAPSAATPGQGKVGAKAGKGGSRLNLKSIPKEAPPAPKKLASIAAGITPGGPKVPSFPFKLGRTKEAKEATARVVNGKLEGYFTNEQLQALEVARREVPSSAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAFGLK 217
BLAST of NO18G01830 vs. NCBI_GenBank
Match: CBN77840.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 85.9 bits (211), Expect = 1.600e-13 Identity = 47/116 (40.52%), Postives = 63/116 (54.31%), Query Frame = 0 Query: 90 PAFSFGAKKPAASAEPTARVVNGKLQGYFTNEQIESLEVARREVPS-SAPSYWKKIAARVPGQTPETCKAMVNQILLDKARGTGKQFFGGYVEVKETKMVVDTEATVGKRFKAAFG 205 PA +K A E + + K +G FT Q E+ + AR+EVPS +YW+KIAARVPGQ CK + +L + A GT +FGGY+E ET VD EA + + FG Sbjct: 90 PAQRRAQEKATAIRERSRKASTRKSEGVFTPPQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFG 205
BLAST of NO18G01830 vs. NCBI_GenBank
Match: CEM10753.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 65.9 bits (159), Expect = 1.700e-7 Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 0 Query: 122 QIESLEVARREVPSSAPSYWKKIAARVPGQTPETCKAMVNQILLDKARGTGKQFFGGYVEVKETKMVV 190 QI +LE ARREVPS A YW +IA RVPG+T C+ V L ++A GT K FF + VKE +M V Sbjct: 103 QIIALETARREVPSGAFLYWDQIAERVPGKTATQCEDYVRTQLFNRAAGTNKNFFKEQIFVKEPEMKV 170 The following BLAST results are available for this feature:
BLAST of NO18G01830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G01830 ID=NO18G01830|Name=NO18G01830|organism=Nannochloropsis oceanica|type=gene|length=2001bpback to top protein sequence of NO18G01830.1 >NO18G01830.1-protein ID=NO18G01830.1-protein|Name=NO18G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=207bpback to top Synonyms
Publications
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