NO18G01830.1, NO18G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01830.1
Unique NameNO18G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1484
Alignment locationchr18:566131..568131 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:566131..568131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01830.1 vs.
Match: EWM23388.1 (hypothetical protein Naga_100189g4 [Nannochloropsis gaditana])

HSP 1 Score: 269.2 bits (687), Expect = 1.000e-68
Identity = 146/214 (68.22%), Postives = 165/214 (77.10%), Query Frame = 0 
Query:    1 MRVIASFLCLVAACSAFQIPMAPRGRSNMAPQMLGNFFTPKKAPLPESSTPTPIKAG-KANAG--RLNLKSIPKEAPPTPKKRTFTSAGV-----KLPAFSFGAKKPAASAEPTARVVNGKLQGYFTNEQIESLEVARREVPSSAPSYWKKIAARVPGQTPETCKAMVNQILLDKARGTGKQFFGGYVEVKETKMVVDTEATVGKRFKAAFGIK 207
            MRVIAS L L A C+AFQ P+  RGRS  APQMLGNFF   K   P ++TP   K G KA  G  RLNLKSIPKEAPP PKK    +AG+     K+P+F F   +   + E TARVVNGKL+GYFTNEQ+++LEVARREVPSSA SYW+KIA++VPGQT ETCKAM NQ+LLDKARGTGK FFGGYVEVKETKMVVDTEATVGKR KAAFG+K
Sbjct:    7 MRVIASLLLLAAVCNAFQAPIVSRGRSRQAPQMLGNFF---KTAAPSAATPGQGKVGAKAGKGGSRLNLKSIPKEAPPAPKKLASIAAGITPGGPKVPSFPFKLGRTKEAKEATARVVNGKLEGYFTNEQLQALEVARREVPSSAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAFGLK 217
The following BLAST results are available for this feature:
BLAST of NO18G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23388.11.000e-6868.22hypothetical protein Naga_100189g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01830NO18G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01830.1NO18G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01830.1.cds1NO18G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01830.1.cds2NO18G01830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01830.1.cds3NO18G01830.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01830.1 ID=NO18G01830.1|Name=NO18G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp
ATGCTGCCGGAGCGAAGTCTGTTGCGCGAGCAGGGTGGGGGAGGTGCGTG
AGAACCATTGTAATAACCACCATTACATGATAGTCAATATCCGTCCACAG
GCACGAGGCTGGTGCATGTTGAGGTCTCGTCGTCCAGACCATCGGCGAGG
TTCAGTAAGTGCGCGAGGCAAGTAGAAATCGAGGTTGGATGCTCTGATGG
TGGATGCGGCTTAGACGACTCCCCGCCACCCGGACAAAATACAACTCATC
ACACTGATGAGTAACCCCATGCATAAATTGTAGCAAACAGAAGCCTGGAC
ACTAAGCCCCACGGCTGCTCGTGGGTGTACCAAGGAAACAGCACACTCGG
CCCGGCCCCCCCTAAAAAAGTGGGAAAATATGAAGGATGCTTGCCAACAA
GCATAGACGTACGAAAACCCACGTAGTACCCTTCCTATTCTTTCGTGGCA
TGCTTCCTCTCTCCTAGGGTTTCCGTAAAGTTTTTTACAATTAACGCTGC
ACATTCTCTTCCCAGCCCTGTGCTTTCATCGTGGTTTCTGAACACGACGC
CCCCCCCGATCCTGATCTTCTTGCGTGCCCACGCCTCTTTTTTGTTCCTC
TTGTCACGATTGCACACACACACTCCCACAGCATCCACTCGGAGCCACCG
CCCCCGACCTCAAGCATGCGTGTGATTGCCTCCTTTCTGTGCCTGGTCGC
GGCCTGCAGCGCCTTCCAAATCCCCATGGCCCCTCGAGGCCGCAGTAACA
TGGCCCCCCAGATGCTCGGAAATTTCTTTACACCCAAGAAAGCACCCCTC
CCGGAGTCCTCCACCCCAACCCCGATCAAGGCGGGCAAGGCAAACGCTGG
TCGCTTGAACCTGAAGAGCATCCCTAAGGAGGCACCGCCTACCCCTAAGA
AACGTACATTTACGTCCGCCGGTGTGAAACTGCCTGCCTTTTCTTTTGGT
GCCAAGAAGCCGGCCGCCTCTGCGGAGCCCACGGCACGTGTGGTGAATGG
GAAGTTGCAGGGTTACTTCACCAACGAGCAAATCGAGTCTCTGGAGGTGG
CGCGGCGCGAGGTGCCTTCCTCCGCACCTTCTTACTGGAAAAAGATTGCT
GCCCGGGTCCCGGGGCAGACGCCTGAGACGTGCAAGGCAATGGTAAACCA
AATTCTGTTAGACAAAGCACGGGGGACGGGGAAGCAGTTCTTTGGGGGCT
ACGTCGAAGTGAAGGAGACAAAGATGGTGGTGGACACGGAGGCGACGGTG
GGGAAGAGGTTCAAGGCGGCGTTTGGGATTAAATAACTGGGGGGGGTAAA
TAAATGGAGGGGGGGGTCATTTGGAGAGGGCTGGGAAGCTGCGCTGAGTG
GTTGTTGAGAGTGGTTTCTGACGCAGAGGGTACTGAGCATTAGACTAACG
GAAGAAGGAGGCAGGTGGTCGCTCAGTGTAGAATTGTGTTGCGAGTGTGG
ATGGGAAGCGGGGAGGGAGGGAGGGAGGGAGGGA
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protein sequence of NO18G01830.1

>NO18G01830.1-protein ID=NO18G01830.1-protein|Name=NO18G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MRVIASFLCLVAACSAFQIPMAPRGRSNMAPQMLGNFFTPKKAPLPESST
PTPIKAGKANAGRLNLKSIPKEAPPTPKKRTFTSAGVKLPAFSFGAKKPA
ASAEPTARVVNGKLQGYFTNEQIESLEVARREVPSSAPSYWKKIAARVPG
QTPETCKAMVNQILLDKARGTGKQFFGGYVEVKETKMVVDTEATVGKRFK
AAFGIK*
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mRNA from alignment at chr18:566131..568131+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01830.1 ID=NO18G01830.1|Name=NO18G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2001bp|location=Sequence derived from alignment at chr18:566131..568131+ (Nannochloropsis oceanica)
ATGCTGCCGGAGCGAAGTCTGTTGCGCGAGCAGGGTGGGGGAGGTGCGTG
AGAACCATTGTAATAACCACCATTACATGATAGTCAATATCCGTCCACAG
GCACGAGGCTGGTGCATGTTGAGGTCTCGTCGTCCAGACCATCGGCGAGG
TTCAGTAAGTGCGCGAGGCAAGTAGAAATCGAGGTTGGATGCTCTGATGG
TGGATGCGGCTTAGACGACTCCCCGCCACCCGGACAAAATACAACTCATC
ACACTGATGAGTAACCCCATGCATAAATTGTAGCAAACAGAAGCCTGGAC
ACTAAGCCCCACGGCTGCTCGTGGGTGTACCAAGGAAACAGCACACTCGG
CCCGGCCCCCCCTAAAAAAGTGGGAAAATATGAAGGATGCTTGCCAACAA
GCATAGACGTACGAAAACCCACGTAGTACCCTTCCTATTCTTTCGTGGCA
TGCTTCCTCTCTCCTAGGGTTTCCGTAAAGTTTTTTACAATTAACGCTGC
ACATTCTCTTCCCAGCCCTGTGCTTTCATCGTGGTTTCTGAACACGACGC
CCCCCCCGATCCTGATCTTCTTGCGTGCCCACGCCTCTTTTTTGTTCCTC
TTGTCACGATTGCACACACACACTCCCACAGCATCCACTCGGAGCCACCG
CCCCCGACCTCAAGCATGCGTGTGATTGCCTCCTTTCTGTGCCTGGTCGC
GGCCTGCAGCGCCTTCCAAATCCCCATGGCCCCTCGAGGTAAGCTAAGCC
CTCGGTGCCACGCCACCTCTTGTTTCTTTCCATGCCACGCACCCCCCCGG
CCAGCACACACCACCATGTTTGTCAATGGAATGAAGCCACGTCGAACGCG
CATGTCTCTTCCAGCTACAGACATTCTCATGGAAGGAGAGAGGGTCTGGC
ATGTTTTTTTGTGCTGGTGTCTGAGTCGTGTGGCTTCTTGTCCTCCCTGC
CCCCCCTCCCCCGTCCATGGCCGCGGCCATGCGTTCTCCACCACCCACCG
TCCAAGCATGCATTTACACTCCATCCACCTACTCCCCACAACTTATCTCG
TACCATCTCTCACTCTTTCTCCCTCTTCCCTCCTGTCACCTCCTCAGGCC
GCAGTAACATGGCCCCCCAGATGCTCGGAAATTTCTTTACACCCAAGAAA
GCACCCCTCCCGGAGTCCTCCACCCCAACCCCGATCAAGGCGGGCAAGGC
AAACGCTGGTCGCTTGAACCTGAAGAGCATCCCTAAGGAGGCACCGCCTA
CCCCTAAGAAACGTACATTTACGTCCGCCGGTGTGAAACTGCCTGCCTTT
TCTTTTGGTGCCAAGAAGCCGGCCGCCTCTGCGGAGCCCACGGCACGTGT
GGTGAATGGGAAGTTGCAGGTATATTCTCGTTAAATCTTCTACACTACTT
TTTCACTGGCTCCTTGGCTTATTCATGTCCTGGGAGGGAAGGCATCCGAA
AGAAAAAGACACGAAAAAACGTGGAAACTCACCCTCCTTCCCTCCCTCCC
TCCTTCCCTCCCTCCCTCCGTCGTCAGGGTTACTTCACCAACGAGCAAAT
CGAGTCTCTGGAGGTGGCGCGGCGCGAGGTGCCTTCCTCCGCACCTTCTT
ACTGGAAAAAGATTGCTGCCCGGGTCCCGGGGCAGACGCCTGAGACGTGC
AAGGCAATGGTAAACCAAATTCTGTTAGACAAAGCACGGGGGACGGGGAA
GCAGTTCTTTGGGGGCTACGTCGAAGTGAAGGAGACAAAGATGGTGGTGG
ACACGGAGGCGACGGTGGGGAAGAGGTTCAAGGCGGCGTTTGGGATTAAA
TAACTGGGGGGGGTAAATAAATGGAGGGGGGGGTCATTTGGAGAGGGCTG
GGAAGCTGCGCTGAGTGGTTGTTGAGAGTGGTTTCTGACGCAGAGGGTAC
TGAGCATTAGACTAACGGAAGAAGGAGGCAGGTGGTCGCTCAGTGTAGAA
TTGTGTTGCGAGTGTGGATGGGAAGCGGGGAGGGAGGGAGGGAGGGAGGG
A
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Coding sequence (CDS) from alignment at chr18:566131..568131+

>NO18G01830.1 ID=NO18G01830.1|Name=NO18G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at chr18:566131..568131+ (Nannochloropsis oceanica)
ATGCGTGTGATTGCCTCCTTTCTGTGCCTGGTCGCGGCCTGCAGCGCCTT
CCAAATCCCCATGGCCCCTCGAGGCCGCAGTAACATGGCCCCCCAGATGC
TCGGAAATTTCTTTACACCCAAGAAAGCACCCCTCCCGGAGTCCTCCACC
CCAACCCCGATCAAGGCGGGCAAGGCAAACGCTGGTCGCTTGAACCTGAA
GAGCATCCCTAAGGAGGCACCGCCTACCCCTAAGAAACGTACATTTACGT
CCGCCGGTGTGAAACTGCCTGCCTTTTCTTTTGGTGCCAAGAAGCCGGCC
GCCTCTGCGGAGCCCACGGCACGTGTGGTGAATGGGAAGTTGCAGGGTTA
CTTCACCAACGAGCAAATCGAGTCTCTGGAGGTGGCGCGGCGCGAGGTGC
CTTCCTCCGCACCTTCTTACTGGAAAAAGATTGCTGCCCGGGTCCCGGGG
CAGACGCCTGAGACGTGCAAGGCAATGGTAAACCAAATTCTGTTAGACAA
AGCACGGGGGACGGGGAAGCAGTTCTTTGGGGGCTACGTCGAAGTGAAGG
AGACAAAGATGGTGGTGGACACGGAGGCGACGGTGGGGAAGAGGTTCAAG
GCGGCGTTTGGGATTAAATAA
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Synonyms
Publications