NO18G01830, NO18G01830 (gene) Nannochloropsis oceanica

Overview
NameNO18G01830
Unique NameNO18G01830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2001
Alignment locationchr18:566131..568131 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:566131..568131 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
Homology
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BLAST of NO18G01830 vs. NCBI_GenBank
Match: EWM23388.1 (hypothetical protein Naga_100189g4 [Nannochloropsis gaditana])

HSP 1 Score: 269.2 bits (687), Expect = 1.000e-68
Identity = 146/214 (68.22%), Postives = 165/214 (77.10%), Query Frame = 0 
Query:    1 MRVIASFLCLVAACSAFQIPMAPRGRSNMAPQMLGNFFTPKKAPLPESSTPTPIKAG-KANAG--RLNLKSIPKEAPPTPKKRTFTSAGV-----KLPAFSFGAKKPAASAEPTARVVNGKLQGYFTNEQIESLEVARREVPSSAPSYWKKIAARVPGQTPETCKAMVNQILLDKARGTGKQFFGGYVEVKETKMVVDTEATVGKRFKAAFGIK 207
            MRVIAS L L A C+AFQ P+  RGRS  APQMLGNFF   K   P ++TP   K G KA  G  RLNLKSIPKEAPP PKK    +AG+     K+P+F F   +   + E TARVVNGKL+GYFTNEQ+++LEVARREVPSSA SYW+KIA++VPGQT ETCKAM NQ+LLDKARGTGK FFGGYVEVKETKMVVDTEATVGKR KAAFG+K
Sbjct:    7 MRVIASLLLLAAVCNAFQAPIVSRGRSRQAPQMLGNFF---KTAAPSAATPGQGKVGAKAGKGGSRLNLKSIPKEAPPAPKKLASIAAGITPGGPKVPSFPFKLGRTKEAKEATARVVNGKLEGYFTNEQLQALEVARREVPSSAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAFGLK 217
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BLAST of NO18G01830 vs. NCBI_GenBank
Match: CBN77840.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.9 bits (211), Expect = 1.600e-13
Identity = 47/116 (40.52%), Postives = 63/116 (54.31%), Query Frame = 0 
Query:   90 PAFSFGAKKPAASAEPTARVVNGKLQGYFTNEQIESLEVARREVPS-SAPSYWKKIAARVPGQTPETCKAMVNQILLDKARGTGKQFFGGYVEVKETKMVVDTEATVGKRFKAAFG 205
            PA     +K  A  E + +    K +G FT  Q E+ + AR+EVPS    +YW+KIAARVPGQ    CK +   +L + A GT   +FGGY+E  ET   VD EA +  +    FG
Sbjct:   90 PAQRRAQEKATAIRERSRKASTRKSEGVFTPPQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFG 205
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BLAST of NO18G01830 vs. NCBI_GenBank
Match: CEM10753.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 65.9 bits (159), Expect = 1.700e-7
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 0 
Query:  122 QIESLEVARREVPSSAPSYWKKIAARVPGQTPETCKAMVNQILLDKARGTGKQFFGGYVEVKETKMVV 190
            QI +LE ARREVPS A  YW +IA RVPG+T   C+  V   L ++A GT K FF   + VKE +M V
Sbjct:  103 QIIALETARREVPSGAFLYWDQIAERVPGKTATQCEDYVRTQLFNRAAGTNKNFFKEQIFVKEPEMKV 170
The following BLAST results are available for this feature:
BLAST of NO18G01830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM23388.11.000e-6868.22hypothetical protein Naga_100189g4 [Nannochloropsi... [more]
CBN77840.11.600e-1340.52expressed unknown protein [Ectocarpus siliculosus][more]
CEM10753.11.700e-751.47unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004036NSK004036Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01830.1NO18G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604329gene_8870Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100189g4gene7067Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01830.1NO18G01830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01830 ID=NO18G01830|Name=NO18G01830|organism=Nannochloropsis oceanica|type=gene|length=2001bp
ATGCTGCCGGAGCGAAGTCTGTTGCGCGAGCAGGGTGGGGGAGGTGCGTG
AGAACCATTGTAATAACCACCATTACATGATAGTCAATATCCGTCCACAG
GCACGAGGCTGGTGCATGTTGAGGTCTCGTCGTCCAGACCATCGGCGAGG
TTCAGTAAGTGCGCGAGGCAAGTAGAAATCGAGGTTGGATGCTCTGATGG
TGGATGCGGCTTAGACGACTCCCCGCCACCCGGACAAAATACAACTCATC
ACACTGATGAGTAACCCCATGCATAAATTGTAGCAAACAGAAGCCTGGAC
ACTAAGCCCCACGGCTGCTCGTGGGTGTACCAAGGAAACAGCACACTCGG
CCCGGCCCCCCCTAAAAAAGTGGGAAAATATGAAGGATGCTTGCCAACAA
GCATAGACGTACGAAAACCCACGTAGTACCCTTCCTATTCTTTCGTGGCA
TGCTTCCTCTCTCCTAGGGTTTCCGTAAAGTTTTTTACAATTAACGCTGC
ACATTCTCTTCCCAGCCCTGTGCTTTCATCGTGGTTTCTGAACACGACGC
CCCCCCCGATCCTGATCTTCTTGCGTGCCCACGCCTCTTTTTTGTTCCTC
TTGTCACGATTGCACACACACACTCCCACAGCATCCACTCGGAGCCACCG
CCCCCGACCTCAAGCATGCGTGTGATTGCCTCCTTTCTGTGCCTGGTCGC
GGCCTGCAGCGCCTTCCAAATCCCCATGGCCCCTCGAGgtaagctaagcc
ctcggtgccacgccacctcttgtttctttccatgccacgcacccccccgg
ccagcacacaccaccatgtttgtcaatggaatgaagccacgtcgaacgcg
catgtctcttccagctacagacattctcatggaaggagagagggtctggc
atgtttttttgtgctggtgtctgagtcgtgtggcttcttgtcctccctgc
cccccctcccccgtccatggccgcggccatgcgttctccaccacccaccg
tccaagcatgcatttacactccatccacctactccccacaacttatctcg
taccatctctcactctttctccctcttccctcctgtcacctcctcagGCC
GCAGTAACATGGCCCCCCAGATGCTCGGAAATTTCTTTACACCCAAGAAA
GCACCCCTCCCGGAGTCCTCCACCCCAACCCCGATCAAGGCGGGCAAGGC
AAACGCTGGTCGCTTGAACCTGAAGAGCATCCCTAAGGAGGCACCGCCTA
CCCCTAAGAAACGTACATTTACGTCCGCCGGTGTGAAACTGCCTGCCTTT
TCTTTTGGTGCCAAGAAGCCGGCCGCCTCTGCGGAGCCCACGGCACGTGT
GGTGAATGGGAAGTTGCAGgtatattctcgttaaatcttctacactactt
tttcactggctccttggcttattcatgtcctgggagggaaggcatccgaa
agaaaaagacacgaaaaaacgtggaaactcaccctccttccctccctccc
tccttccctccctccctccgtcgtcagGGTTACTTCACCAACGAGCAAAT
CGAGTCTCTGGAGGTGGCGCGGCGCGAGGTGCCTTCCTCCGCACCTTCTT
ACTGGAAAAAGATTGCTGCCCGGGTCCCGGGGCAGACGCCTGAGACGTGC
AAGGCAATGGTAAACCAAATTCTGTTAGACAAAGCACGGGGGACGGGGAA
GCAGTTCTTTGGGGGCTACGTCGAAGTGAAGGAGACAAAGATGGTGGTGG
ACACGGAGGCGACGGTGGGGAAGAGGTTCAAGGCGGCGTTTGGGATTAAA
TAACTGGGGGGGGTAAATAAATGGAGGGGGGGGTCATTTGGAGAGGGCTG
GGAAGCTGCGCTGAGTGGTTGTTGAGAGTGGTTTCTGACGCAGAGGGTAC
TGAGCATTAGACTAACGGAAGAAGGAGGCAGGTGGTCGCTCAGTGTAGAA
TTGTGTTGCGAGTGTGGATGGGAAGCGGGGAGGGAGGGAGGGAGGGAGGG
A
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protein sequence of NO18G01830.1

>NO18G01830.1-protein ID=NO18G01830.1-protein|Name=NO18G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MRVIASFLCLVAACSAFQIPMAPRGRSNMAPQMLGNFFTPKKAPLPESST
PTPIKAGKANAGRLNLKSIPKEAPPTPKKRTFTSAGVKLPAFSFGAKKPA
ASAEPTARVVNGKLQGYFTNEQIESLEVARREVPSSAPSYWKKIAARVPG
QTPETCKAMVNQILLDKARGTGKQFFGGYVEVKETKMVVDTEATVGKRFK
AAFGIK*
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Synonyms
Publications