NO18G01740, NO18G01740 (gene) Nannochloropsis oceanica

Overview
NameNO18G01740
Unique NameNO18G01740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2266
Alignment locationchr18:549893..552158 +

Link to JBrowse

Properties
Property NameValue
DescriptionChaperonin cpn10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:549893..552158 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR011032GroES-like
IPR020818Chaperonin_Cpn10
Homology
BLAST of NO18G01740 vs. NCBI_GenBank
Match: XP_005853393.1 (heat shock protein, mitochondrial [Nannochloropsis gaditana CCMP526] >EKU22964.1 heat shock protein, mitochondrial [Nannochloropsis gaditana CCMP526] >EWM23380.1 chaperonin cpn10 [Nannochloropsis gaditana])

HSP 1 Score: 235.3 bits (599), Expect = 1.400e-58
Identity = 122/170 (71.76%), Postives = 137/170 (80.59%), Query Frame = 0
Query:   13 LQFLLVVVIVTLLVERAAAFIPRLPLLS------GASSSALKMVAVDDSTTLVGMTHDEYIGTLPEQAKSMAAEWQYLLVERLEPPTQTQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGVLTQIQNLKAGDVAMVKQPWGIGPRDETWEGRKFSFIRSHDVLSRIGATQ 177
            +Q+LLVVV++ L +  A AFIP LP +        A    +  +AV DS+TLV + HDEYI TLPEQA+SM AEWQYLLVERLE PT+TQGGLFLPSTDQDPLHMVRIVSIGSGLVGESG+LT I+NL  GDVA VKQPWGIGPRDE WEGRKFSFIRSHDVLSRIG T+
Sbjct:   19 MQYLLVVVVLILSLGPAKAFIPLLPHMPLQHHKYLAGGPDVVRMAVQDSSTLVSLPHDEYINTLPEQARSMKAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRDENWEGRKFSFIRSHDVLSRIGPTK 188          
BLAST of NO18G01740 vs. NCBI_GenBank
Match: CBJ32290.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.4 bits (233), Expect = 3.900e-16
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 0
Query:   70 LPEQAKSMAAEWQYLLVERLEPPTQTQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGVLTQIQNLKAGDVAMVKQPWGIGPRDETWEGRKFSFIRSHDVLSRIGATQE 178
            LP QA+   A +  + VERL    Q   GLFLP+     +H+ ++VSIG+G  GESG +T    +K GD+  VK P+GIGPRD+ + G+KFSF+R   + + I  +++
Sbjct:    7 LPTQAQRQKALYDMVYVERLPEEQQMTSGLFLPAKANPRMHVCKVVSIGNGREGESGNVTPNDAVKQGDLVFVKDPYGIGPRDDEFAGKKFSFVRYTSICAVIPNSED 114          
BLAST of NO18G01740 vs. NCBI_GenBank
Match: GAX22573.1 (hypothetical protein FisN_14Hh201 [Fistulifera solaris])

HSP 1 Score: 89.0 bits (219), Expect = 1.600e-14
Identity = 39/93 (41.94%), Postives = 63/93 (67.74%), Query Frame = 0
Query:   81 WQYLLVERLEPPTQTQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGVLTQIQNLKAGDVAMVKQPWGIGPRD-ETWEGRKFSFIRSHDVLSRI 173
            +   LVER++   +   GLFLP+ D   LH+ R++++G G   E+G++  + ++K GD+ + K PWGIGP+D ET +GRK+SF+RS D+ + I
Sbjct:   52 YDMFLVERIQGRPKLDSGLFLPNEDLPRLHLCRVIAMGPGREEENGLVAPMPDVKIGDIVVAKNPWGIGPKDEETTDGRKYSFMRSQDLAAVI 144          
BLAST of NO18G01740 vs. NCBI_GenBank
Match: GAX10688.1 (hypothetical protein FisN_14Lh201 [Fistulifera solaris])

HSP 1 Score: 89.0 bits (219), Expect = 1.600e-14
Identity = 39/93 (41.94%), Postives = 63/93 (67.74%), Query Frame = 0
Query:   81 WQYLLVERLEPPTQTQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGVLTQIQNLKAGDVAMVKQPWGIGPRD-ETWEGRKFSFIRSHDVLSRI 173
            +   LVER++   +   GLFLP+ D   LH+ R++++G G   E+G++  + ++K GD+ + K PWGIGP+D ET +GRK+SF+RS D+ + I
Sbjct:   54 YDMFLVERIQGRPKLDSGLFLPNEDLPRLHLCRVIAMGPGREEENGLVAPMPDVKIGDIVVAKNPWGIGPKDEETTDGRKYSFMRSQDLAAVI 146          
BLAST of NO18G01740 vs. NCBI_GenBank
Match: EJK70949.1 (hypothetical protein THAOC_07652 [Thalassiosira oceanica])

HSP 1 Score: 88.2 bits (217), Expect = 2.800e-14
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 0
Query:   78 AAEWQYLLVERLEPPTQTQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGVLTQIQNLKAGDVAMVKQPWGIGPRD-ETWEGRKFSFIRSHDV 169
            A  +  +LVERL+    T+ GLF+P  +   LH+ R++S+G G   E+G++  + N+  G + + K PWGIGP+D ET +GRK SF+RS D+
Sbjct:   21 ACTYDMVLVERLQDRPDTESGLFVPRENLPALHLCRVISMGPGREEENGMVAPMPNISPGSIVIAKNPWGIGPKDEETPDGRKLSFMRSQDI 112          
BLAST of NO18G01740 vs. NCBI_GenBank
Match: XP_002179516.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49339.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 85.1 bits (209), Expect = 2.400e-13
Identity = 46/136 (33.82%), Postives = 77/136 (56.62%), Query Frame = 0
Query:   39 LSGASSSALKMVAVDDSTTLVGMTHDEYIGTLP-EQAKSMAAEWQ----YLLVERLEPPTQTQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGVLTQIQNLKAGDVAMVKQPWGIGPRD-ETWEGRKFSFIRSHDV 169
            L+ A+SS  ++ A+              IG L  +++      WQ     +LVER++    T+ GLF+P  D   LH+ +++S+G G   E+G ++ +  ++ GD+ + K PWGIGP+D ET +G+K SF+RS D+
Sbjct:    8 LAMAASSLSRVSALSSKAPKAKFYGGAGIGRLVFDESAGKENAWQCHYDMVLVERVQGKPPTESGLFVPQEDLPKLHLCKVLSVGPGREEENGRVSPMPEIRVGDIVIAKNPWGIGPKDEETADGKKLSFMRSQDI 143          
BLAST of NO18G01740 vs. NCBI_GenBank
Match: OEU11154.1 (hypothetical protein FRACYDRAFT_246265 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 80.1 bits (196), Expect = 7.600e-12
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   64 DEYIGTLPEQAKSMAAEWQYLLVERLE----PPTQTQGGLFLPSTDQDPLHMVRIVSIGSGLVGESG-VLTQIQNLKAGDVAMVKQPWGIGPRDETW-EGRKFSFIRSHDVLSRI 173
            DEY G    +A +    +  +LVER++    P    +  LF+P      LH+ RI+S+G+G   E+G V   + NLK GD+   K PWGIGP+DE   +G K SFIR+ DV ++I
Sbjct:   54 DEYSG----KAGTWNCHYDMVLVERIQKRKGPADVDENSLFVPDDQLPRLHLCRILSVGNGREEENGSVAPDLDNLKVGDMIYSKHPWGIGPKDEELADGTKLSFIRTIDVAAKI 164          
BLAST of NO18G01740 vs. NCBI_GenBank
Match: XP_002286407.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96048.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 76.6 bits (187), Expect = 8.400e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 0
Query:   80 EWQYLLVERLEPPTQTQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGVLTQIQNLKAGDVAMVKQPWGIGPRD-ETWEGRKFSFIRSHDVLSRIGAT 176
            ++  +LVERL+   +T+ GLF+P  +   LH+ +      G   E+G++  + N+  GDV + K PWGIGP+D ET +G+K SF+R  D+ + +  T
Sbjct:   75 KYDMILVERLQDRPKTESGLFVPRENLPKLHLCK------GREEENGMIAPMPNVNVGDVVIAKNPWGIGPKDEETADGKKLSFMRGADIAAVVEGT 165          
The following BLAST results are available for this feature:
BLAST of NO18G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
XP_005853393.11.400e-5871.76heat shock protein, mitochondrial [Nannochloropsis... [more]
CBJ32290.13.900e-1641.67conserved unknown protein [Ectocarpus siliculosus][more]
GAX22573.11.600e-1441.94hypothetical protein FisN_14Hh201 [Fistulifera sol... [more]
GAX10688.11.600e-1441.94hypothetical protein FisN_14Lh201 [Fistulifera sol... [more]
EJK70949.12.800e-1442.39hypothetical protein THAOC_07652 [Thalassiosira oc... [more]
XP_002179516.12.400e-1333.82predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU11154.17.600e-1240.00hypothetical protein FRACYDRAFT_246265 [Fragilario... [more]
XP_002286407.18.400e-1137.11predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004025NSK004025Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01740.1NO18G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604299gene_8859Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100472g5gene7076Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01740.1NO18G01740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01740 ID=NO18G01740|Name=NO18G01740|organism=Nannochloropsis oceanica|type=gene|length=2266bp
TGATGATGTGCGTTGAACATGGTGGTGCTTGCCACTGCTTGTCGTCTCAT
CGCATGACTAGGCCCCCGCAAAACCACGGAAGCGGGCAACTTTTATCCTC
TTCGTCATCTTGCAGCTGATATTCTGCTCCAAAGCCAAGACTTGTCAGCA
TGTACGATCACCGGCCTCCCCTCCAACCCGACCCTTGGCCTTCGAGAAAA
TCGAGCACAGATACTGAAACGTACCCCCACGTGCCATCCGCCAACCCTAC
ATCCAACCCACAGCAAGAATGGCGCGCCAACACGCCCAAAGTCCAGTCCT
CTCCCTGCAGTTCCTCCTGGTAGTGGTGATCGTGACCCTGCTGGTGGAGC
GTGCCGCGGCCTTCATCCCTCGCCTCCCCCTGCTCTCCGGGGCCTCTTCC
TCTGCGCTAAAAATGGTTGCCGTGGACGATTCCACCACGCTTGTGGGCAT
GACTCATGACGAGTACATTGGAACGCTCCCTGAACAGgtatgtgagaaag
tgtaaaggctcatctttgcaggctgtacgggtgatgcaagcatgtatcac
tcaccctccctgtctcccaaccttccccctttttacagGCCAAATCTATG
GCGGCCGAATGGCAGTACCTGCTCGTCGAGCGCCTGGAGCCCCCCACCCA
AACACAAGGCGGGCTTTTCCTCCCCTCTACCGACCAGGACCCATTGCACA
TGGTGCGTATCGTGTCGATCGGCTCGGGGCTAGTGGGAGAGAGTGGGGTA
TTGACCCAGATTCAGAACTTGAAGGCAGGCGACGTGGCGATGGTGAAGCA
ACCGTGGGGGATTGGCCCGAGGGATGAGACGTGGGAGGGTAGGAAGTTTT
CGTTTATTCGGAGTCATGATGTGTTGAGTCGGATCGGGGCCACCCAGGAG
TAGGGAGGGAGGGAGGAAGGGAGGGAAGGGGAAATGGAGAGAAAAAAGAA
TGTGTGAGTGAGGAGTACATGAAGTGGTGATCGTGGGTGCATAGAGTGCT
TCAAGCCGTGTGATTCTCCCACTCCGATTGCTCGTGATTCCTATCGACAA
AAGTAAAAACAAGAAGAATATCCACGCAGATAGAAAGAGACAATGAACAA
TGGAGGTTTGAAGCAGTCCAGCTGTAGAACACAGCACCATCGCTCCGCTA
TCCTCTTTCATTGAGGGACATGTCCCCTGCATTCTGATGCATTCCTCTTT
GTTAACTTATCCCTTCGTCGTCCATGTACATCCCACTCTTTTTCCCTCCC
TCCCTTTGTTCCTTCCTCCTTCCTCAAGCCCCGCTCCCCCTCATCTTCTC
AAGCCAATCCGTTCTGCCACTGTGGGTGTATGGTAGGCCCCATTCCCTCC
TCCCTCTCCTCCCCCTCCTCTTGCTCCTCCCTCCACCCCGCCTGTGCGTC
CCTGCGGTGTACTAGTGGTAGTGTCCGAGGGGCCGCACGGAGTGCTCACT
CCTGCAACAGGAACACCAACACCCCCCGCTACACGAGCAGCAGCAGCAGT
GGCAAATTGTTGTTGTTGGTGGTGGTGTTCTTGTTCCCGTTGCCTTTGTT
GGACGGCTGTTCGACCAACGAGCGAAGGGGAAAGAAAGTGAGGAACGGAA
AAGAGAGGGGTTTGTGAAGGGTGATGTTGGTGAGTTTGGATGGTATTGAC
ACCCGTGATGGGCCACTGCAGCACCCGCATTATAGTAACAGCAGCATTGG
GTACATTTGAGAGGGAGTACGTTTGAGATTCTGTTCTTCGGCTTTCTTGA
AGCCCTCGCTGTGGTGGCCGGGCGGGGAGGAGTTACGCGAGAGAGCGCTG
TCACGCCACACTGTCCACCGTGCCACACATACACAGACATGGTTGCACAC
AAAAAACTCCAGCTTATTCCCACGCTCATATCCTCCTTTACTTACCCTCC
AACTCCTCCACGTCCTCCGGCTTGATCTCAATGCGGGTAGGAGGACGGCG
CAGCATTTTACTTGCTTGTATGATGATGGTGCTGAGGGCTTCTTGCCTGG
TTGGCGCGTCTGACTGTACGAGATGGTGTGCGGGGGAAATGTGCCCGGTT
TCTATACGTGCGCCTTGATAGCCTGGTAGTCCGTGTGCGCACGTAATAGC
GTGGTTTGTGTTAGAGACGACAAAGGCAAAAAGAACAACTTGACTTGAGA
CTGACTTGTTTCAAAACGCGCCGACGATGCAACGGCGACTACCTCCTGTG
GTCTGTGTGGGCCATCTACTATCCTTCCTGTGGTATCGTGGTCGACATCG
CTTTGCCTCTGACCAG
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protein sequence of NO18G01740.1

>NO18G01740.1-protein ID=NO18G01740.1-protein|Name=NO18G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MARQHAQSPVLSLQFLLVVVIVTLLVERAAAFIPRLPLLSGASSSALKMV
AVDDSTTLVGMTHDEYIGTLPEQAKSMAAEWQYLLVERLEPPTQTQGGLF
LPSTDQDPLHMVRIVSIGSGLVGESGVLTQIQNLKAGDVAMVKQPWGIGP
RDETWEGRKFSFIRSHDVLSRIGATQE*
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Synonyms
Publications