NO18G01740.1, NO18G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01740.1
Unique NameNO18G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2165
Alignment locationchr18:549893..552158 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:549893..552158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01740.1 vs.
Match: XP_005853393.1 (heat shock protein, mitochondrial [Nannochloropsis gaditana CCMP526]; EKU22964.1 heat shock protein, mitochondrial [Nannochloropsis gaditana CCMP526]; EWM23380.1 chaperonin cpn10 [Nannochloropsis gaditana])

HSP 1 Score: 235.3 bits (599), Expect = 1.400e-58
Identity = 122/170 (71.76%), Postives = 137/170 (80.59%), Query Frame = 0 
Query:   13 LQFLLVVVIVTLLVERAAAFIPRLPLLSG------ASSSALKMVAVDDSTTLVGMTHDEYIGTLPEQAKSMAAEWQYLLVERLEPPTQTQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGVLTQIQNLKAGDVAMVKQPWGIGPRDETWEGRKFSFIRSHDVLSRIGATQ 177
            +Q+LLVVV++ L +  A AFIP LP +        A    +  +AV DS+TLV + HDEYI TLPEQA+SM AEWQYLLVERLE PT+TQGGLFLPSTDQDPLHMVRIVSIGSGLVGESG+LT I+NL  GDVA VKQPWGIGPRDE WEGRKFSFIRSHDVLSRIG T+
Sbjct:   19 MQYLLVVVVLILSLGPAKAFIPLLPHMPLQHHKYLAGGPDVVRMAVQDSSTLVSLPHDEYINTLPEQARSMKAEWQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRIVSIGSGLVGESGMLTTIENLGPGDVAYVKQPWGIGPRDENWEGRKFSFIRSHDVLSRIGPTK 188
The following BLAST results are available for this feature:
BLAST of NO18G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853393.11.400e-5871.76heat shock protein, mitochondrial [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01740NO18G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01740.1NO18G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01740.1.cds1NO18G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01740.1.cds2NO18G01740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01740.1 ID=NO18G01740.1|Name=NO18G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2165bp
TGATGATGTGCGTTGAACATGGTGGTGCTTGCCACTGCTTGTCGTCTCAT
CGCATGACTAGGCCCCCGCAAAACCACGGAAGCGGGCAACTTTTATCCTC
TTCGTCATCTTGCAGCTGATATTCTGCTCCAAAGCCAAGACTTGTCAGCA
TGTACGATCACCGGCCTCCCCTCCAACCCGACCCTTGGCCTTCGAGAAAA
TCGAGCACAGATACTGAAACGTACCCCCACGTGCCATCCGCCAACCCTAC
ATCCAACCCACAGCAAGAATGGCGCGCCAACACGCCCAAAGTCCAGTCCT
CTCCCTGCAGTTCCTCCTGGTAGTGGTGATCGTGACCCTGCTGGTGGAGC
GTGCCGCGGCCTTCATCCCTCGCCTCCCCCTGCTCTCCGGGGCCTCTTCC
TCTGCGCTAAAAATGGTTGCCGTGGACGATTCCACCACGCTTGTGGGCAT
GACTCATGACGAGTACATTGGAACGCTCCCTGAACAGGCCAAATCTATGG
CGGCCGAATGGCAGTACCTGCTCGTCGAGCGCCTGGAGCCCCCCACCCAA
ACACAAGGCGGGCTTTTCCTCCCCTCTACCGACCAGGACCCATTGCACAT
GGTGCGTATCGTGTCGATCGGCTCGGGGCTAGTGGGAGAGAGTGGGGTAT
TGACCCAGATTCAGAACTTGAAGGCAGGCGACGTGGCGATGGTGAAGCAA
CCGTGGGGGATTGGCCCGAGGGATGAGACGTGGGAGGGTAGGAAGTTTTC
GTTTATTCGGAGTCATGATGTGTTGAGTCGGATCGGGGCCACCCAGGAGT
AGGGAGGGAGGGAGGAAGGGAGGGAAGGGGAAATGGAGAGAAAAAAGAAT
GTGTGAGTGAGGAGTACATGAAGTGGTGATCGTGGGTGCATAGAGTGCTT
CAAGCCGTGTGATTCTCCCACTCCGATTGCTCGTGATTCCTATCGACAAA
AGTAAAAACAAGAAGAATATCCACGCAGATAGAAAGAGACAATGAACAAT
GGAGGTTTGAAGCAGTCCAGCTGTAGAACACAGCACCATCGCTCCGCTAT
CCTCTTTCATTGAGGGACATGTCCCCTGCATTCTGATGCATTCCTCTTTG
TTAACTTATCCCTTCGTCGTCCATGTACATCCCACTCTTTTTCCCTCCCT
CCCTTTGTTCCTTCCTCCTTCCTCAAGCCCCGCTCCCCCTCATCTTCTCA
AGCCAATCCGTTCTGCCACTGTGGGTGTATGGTAGGCCCCATTCCCTCCT
CCCTCTCCTCCCCCTCCTCTTGCTCCTCCCTCCACCCCGCCTGTGCGTCC
CTGCGGTGTACTAGTGGTAGTGTCCGAGGGGCCGCACGGAGTGCTCACTC
CTGCAACAGGAACACCAACACCCCCCGCTACACGAGCAGCAGCAGCAGTG
GCAAATTGTTGTTGTTGGTGGTGGTGTTCTTGTTCCCGTTGCCTTTGTTG
GACGGCTGTTCGACCAACGAGCGAAGGGGAAAGAAAGTGAGGAACGGAAA
AGAGAGGGGTTTGTGAAGGGTGATGTTGGTGAGTTTGGATGGTATTGACA
CCCGTGATGGGCCACTGCAGCACCCGCATTATAGTAACAGCAGCATTGGG
TACATTTGAGAGGGAGTACGTTTGAGATTCTGTTCTTCGGCTTTCTTGAA
GCCCTCGCTGTGGTGGCCGGGCGGGGAGGAGTTACGCGAGAGAGCGCTGT
CACGCCACACTGTCCACCGTGCCACACATACACAGACATGGTTGCACACA
AAAAACTCCAGCTTATTCCCACGCTCATATCCTCCTTTACTTACCCTCCA
ACTCCTCCACGTCCTCCGGCTTGATCTCAATGCGGGTAGGAGGACGGCGC
AGCATTTTACTTGCTTGTATGATGATGGTGCTGAGGGCTTCTTGCCTGGT
TGGCGCGTCTGACTGTACGAGATGGTGTGCGGGGGAAATGTGCCCGGTTT
CTATACGTGCGCCTTGATAGCCTGGTAGTCCGTGTGCGCACGTAATAGCG
TGGTTTGTGTTAGAGACGACAAAGGCAAAAAGAACAACTTGACTTGAGAC
TGACTTGTTTCAAAACGCGCCGACGATGCAACGGCGACTACCTCCTGTGG
TCTGTGTGGGCCATCTACTATCCTTCCTGTGGTATCGTGGTCGACATCGC
TTTGCCTCTGACCAG
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protein sequence of NO18G01740.1

>NO18G01740.1-protein ID=NO18G01740.1-protein|Name=NO18G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MARQHAQSPVLSLQFLLVVVIVTLLVERAAAFIPRLPLLSGASSSALKMV
AVDDSTTLVGMTHDEYIGTLPEQAKSMAAEWQYLLVERLEPPTQTQGGLF
LPSTDQDPLHMVRIVSIGSGLVGESGVLTQIQNLKAGDVAMVKQPWGIGP
RDETWEGRKFSFIRSHDVLSRIGATQE*
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mRNA from alignment at chr18:549893..552158+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01740.1 ID=NO18G01740.1|Name=NO18G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2266bp|location=Sequence derived from alignment at chr18:549893..552158+ (Nannochloropsis oceanica)
TGATGATGTGCGTTGAACATGGTGGTGCTTGCCACTGCTTGTCGTCTCAT
CGCATGACTAGGCCCCCGCAAAACCACGGAAGCGGGCAACTTTTATCCTC
TTCGTCATCTTGCAGCTGATATTCTGCTCCAAAGCCAAGACTTGTCAGCA
TGTACGATCACCGGCCTCCCCTCCAACCCGACCCTTGGCCTTCGAGAAAA
TCGAGCACAGATACTGAAACGTACCCCCACGTGCCATCCGCCAACCCTAC
ATCCAACCCACAGCAAGAATGGCGCGCCAACACGCCCAAAGTCCAGTCCT
CTCCCTGCAGTTCCTCCTGGTAGTGGTGATCGTGACCCTGCTGGTGGAGC
GTGCCGCGGCCTTCATCCCTCGCCTCCCCCTGCTCTCCGGGGCCTCTTCC
TCTGCGCTAAAAATGGTTGCCGTGGACGATTCCACCACGCTTGTGGGCAT
GACTCATGACGAGTACATTGGAACGCTCCCTGAACAGGTATGTGAGAAAG
TGTAAAGGCTCATCTTTGCAGGCTGTACGGGTGATGCAAGCATGTATCAC
TCACCCTCCCTGTCTCCCAACCTTCCCCCTTTTTACAGGCCAAATCTATG
GCGGCCGAATGGCAGTACCTGCTCGTCGAGCGCCTGGAGCCCCCCACCCA
AACACAAGGCGGGCTTTTCCTCCCCTCTACCGACCAGGACCCATTGCACA
TGGTGCGTATCGTGTCGATCGGCTCGGGGCTAGTGGGAGAGAGTGGGGTA
TTGACCCAGATTCAGAACTTGAAGGCAGGCGACGTGGCGATGGTGAAGCA
ACCGTGGGGGATTGGCCCGAGGGATGAGACGTGGGAGGGTAGGAAGTTTT
CGTTTATTCGGAGTCATGATGTGTTGAGTCGGATCGGGGCCACCCAGGAG
TAGGGAGGGAGGGAGGAAGGGAGGGAAGGGGAAATGGAGAGAAAAAAGAA
TGTGTGAGTGAGGAGTACATGAAGTGGTGATCGTGGGTGCATAGAGTGCT
TCAAGCCGTGTGATTCTCCCACTCCGATTGCTCGTGATTCCTATCGACAA
AAGTAAAAACAAGAAGAATATCCACGCAGATAGAAAGAGACAATGAACAA
TGGAGGTTTGAAGCAGTCCAGCTGTAGAACACAGCACCATCGCTCCGCTA
TCCTCTTTCATTGAGGGACATGTCCCCTGCATTCTGATGCATTCCTCTTT
GTTAACTTATCCCTTCGTCGTCCATGTACATCCCACTCTTTTTCCCTCCC
TCCCTTTGTTCCTTCCTCCTTCCTCAAGCCCCGCTCCCCCTCATCTTCTC
AAGCCAATCCGTTCTGCCACTGTGGGTGTATGGTAGGCCCCATTCCCTCC
TCCCTCTCCTCCCCCTCCTCTTGCTCCTCCCTCCACCCCGCCTGTGCGTC
CCTGCGGTGTACTAGTGGTAGTGTCCGAGGGGCCGCACGGAGTGCTCACT
CCTGCAACAGGAACACCAACACCCCCCGCTACACGAGCAGCAGCAGCAGT
GGCAAATTGTTGTTGTTGGTGGTGGTGTTCTTGTTCCCGTTGCCTTTGTT
GGACGGCTGTTCGACCAACGAGCGAAGGGGAAAGAAAGTGAGGAACGGAA
AAGAGAGGGGTTTGTGAAGGGTGATGTTGGTGAGTTTGGATGGTATTGAC
ACCCGTGATGGGCCACTGCAGCACCCGCATTATAGTAACAGCAGCATTGG
GTACATTTGAGAGGGAGTACGTTTGAGATTCTGTTCTTCGGCTTTCTTGA
AGCCCTCGCTGTGGTGGCCGGGCGGGGAGGAGTTACGCGAGAGAGCGCTG
TCACGCCACACTGTCCACCGTGCCACACATACACAGACATGGTTGCACAC
AAAAAACTCCAGCTTATTCCCACGCTCATATCCTCCTTTACTTACCCTCC
AACTCCTCCACGTCCTCCGGCTTGATCTCAATGCGGGTAGGAGGACGGCG
CAGCATTTTACTTGCTTGTATGATGATGGTGCTGAGGGCTTCTTGCCTGG
TTGGCGCGTCTGACTGTACGAGATGGTGTGCGGGGGAAATGTGCCCGGTT
TCTATACGTGCGCCTTGATAGCCTGGTAGTCCGTGTGCGCACGTAATAGC
GTGGTTTGTGTTAGAGACGACAAAGGCAAAAAGAACAACTTGACTTGAGA
CTGACTTGTTTCAAAACGCGCCGACGATGCAACGGCGACTACCTCCTGTG
GTCTGTGTGGGCCATCTACTATCCTTCCTGTGGTATCGTGGTCGACATCG
CTTTGCCTCTGACCAG
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Coding sequence (CDS) from alignment at chr18:549893..552158+

>NO18G01740.1 ID=NO18G01740.1|Name=NO18G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at chr18:549893..552158+ (Nannochloropsis oceanica)
ATGGCGCGCCAACACGCCCAAAGTCCAGTCCTCTCCCTGCAGTTCCTCCT
GGTAGTGGTGATCGTGACCCTGCTGGTGGAGCGTGCCGCGGCCTTCATCC
CTCGCCTCCCCCTGCTCTCCGGGGCCTCTTCCTCTGCGCTAAAAATGGTT
GCCGTGGACGATTCCACCACGCTTGTGGGCATGACTCATGACGAGTACAT
TGGAACGCTCCCTGAACAGGCCAAATCTATGGCGGCCGAATGGCAGTACC
TGCTCGTCGAGCGCCTGGAGCCCCCCACCCAAACACAAGGCGGGCTTTTC
CTCCCCTCTACCGACCAGGACCCATTGCACATGGTGCGTATCGTGTCGAT
CGGCTCGGGGCTAGTGGGAGAGAGTGGGGTATTGACCCAGATTCAGAACT
TGAAGGCAGGCGACGTGGCGATGGTGAAGCAACCGTGGGGGATTGGCCCG
AGGGATGAGACGTGGGAGGGTAGGAAGTTTTCGTTTATTCGGAGTCATGA
TGTGTTGAGTCGGATCGGGGCCACCCAGGAGTAG
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Synonyms
Publications