NO18G01510, NO18G01510 (gene) Nannochloropsis oceanica

Overview
NameNO18G01510
Unique NameNO18G01510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2164
Alignment locationchr18:493359..495522 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:493359..495522 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016593Cdc73/Paf1 complex
Vocabulary: Biological Process
TermDefinition
GO:0006368transcription elongation from RNA polymerase II promoter
GO:0016570histone modification
GO:0009987cellular process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR007133RNA_pol_II-assoc_Paf1
Homology
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BLAST of NO18G01510 vs. NCBI_GenBank
Match: EWM23356.1 (hypothetical protein Naga_100057g23 [Nannochloropsis gaditana])

HSP 1 Score: 375.9 bits (964), Expect = 2.300e-100
Identity = 231/352 (65.62%), Postives = 268/352 (76.14%), Query Frame = 0 
Query:  140 PRHLSATASSSSKTVEPHAYKDKRSRAHPPSSSAPKHPPVQLARWRDALRSDFIVDMQFQVPLPEVPLGPRFLTLDSLANLGDLISYKDSVPLASQFKYALHSDISLGIEIDTIDRKKWQPPPA--SSLPPSLHPDDMALLEWDLFKGKQKRAGEDGXXXXXXXXXXXXXXXXXXTGGVATAGQVAAPWMLRPRYETTVTYDCQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFDESRQEGWEAAIARTFDEARRGEGLAPREEGGKGPLWVAEIVPDLEQWANELVVVHFGNELRGREEEAAMEAPLFVLEGGRE-EGLVHGTTVKAGYMRGRGHVTAEAARVGGG 489
            P HL+A  +++ K+          +R    +S      PVQL+RWRDA+RSDF+VD++FQ+PLPEVPLGPRFLT+DSLANLGDL+ Y++ VPLAS+FKY LHSDISLG+EIDTIDRKKWQ P +  +SLPPSLHPDD A LEW+LF+G+QKR  E         XXXXXXXXXX T GVATA  VAAPWMLRPRYET VTYD Q+           XXXXXXXXXXXXXXXXXXXX V DE+RQEGWEAAIAR+F+EA+RGEGL PRE G + P WVAE+VPD  QWA+EL+VV FGNE+RGREEEAA EAPLF +EGGRE EG   G TVKAGY RG+GH +   AR GGG
Sbjct:  128 PSHLAAATTAAHKS-------QAGTRGRGGASGGSTSAPVQLSRWRDAIRSDFVVDLKFQLPLPEVPLGPRFLTVDSLANLGDLVRYREVVPLASRFKYPLHSDISLGVEIDTIDRKKWQAPVSNGASLPPSLHPDDAAFLEWELFQGRQKREAE---------XXXXXXXXXXDTEGVATAADVAAPWMLRPRYETAVTYDSQQ-------GREGXXXXXXXXXXXXXXXXXXXXXVLDETRQEGWEAAIARSFEEAQRGEGLGPREAGERKPAWVAELVPDAGQWASELMVVQFGNEVRGREEEAAQEAPLFAVEGGREGEGWGLGRTVKAGYYRGQGHASVGEAREGGG 456
[Close]
BLAST of NO18G01510 vs. NCBI_GenBank
Match: EWM23357.1 (hypothetical protein Naga_100057g23 [Nannochloropsis gaditana])

HSP 1 Score: 375.9 bits (964), Expect = 2.300e-100
Identity = 231/352 (65.62%), Postives = 268/352 (76.14%), Query Frame = 0 
Query:  140 PRHLSATASSSSKTVEPHAYKDKRSRAHPPSSSAPKHPPVQLARWRDALRSDFIVDMQFQVPLPEVPLGPRFLTLDSLANLGDLISYKDSVPLASQFKYALHSDISLGIEIDTIDRKKWQPPPA--SSLPPSLHPDDMALLEWDLFKGKQKRAGEDGXXXXXXXXXXXXXXXXXXTGGVATAGQVAAPWMLRPRYETTVTYDCQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFDESRQEGWEAAIARTFDEARRGEGLAPREEGGKGPLWVAEIVPDLEQWANELVVVHFGNELRGREEEAAMEAPLFVLEGGRE-EGLVHGTTVKAGYMRGRGHVTAEAARVGGG 489
            P HL+A  +++ K+          +R    +S      PVQL+RWRDA+RSDF+VD++FQ+PLPEVPLGPRFLT+DSLANLGDL+ Y++ VPLAS+FKY LHSDISLG+EIDTIDRKKWQ P +  +SLPPSLHPDD A LEW+LF+G+QKR  E         XXXXXXXXXX T GVATA  VAAPWMLRPRYET VTYD Q+           XXXXXXXXXXXXXXXXXXXX V DE+RQEGWEAAIAR+F+EA+RGEGL PRE G + P WVAE+VPD  QWA+EL+VV FGNE+RGREEEAA EAPLF +EGGRE EG   G TVKAGY RG+GH +   AR GGG
Sbjct:  127 PSHLAAATTAAHKS-------QAGTRGRGGASGGSTSAPVQLSRWRDAIRSDFVVDLKFQLPLPEVPLGPRFLTVDSLANLGDLVRYREVVPLASRFKYPLHSDISLGVEIDTIDRKKWQAPVSNGASLPPSLHPDDAAFLEWELFQGRQKREAE---------XXXXXXXXXXDTEGVATAADVAAPWMLRPRYETAVTYDSQQ-------GREGXXXXXXXXXXXXXXXXXXXXXVLDETRQEGWEAAIARSFEEAQRGEGLGPREAGERKPAWVAELVPDAGQWASELMVVQFGNEVRGREEEAAQEAPLFAVEGGREGEGWGLGRTVKAGYYRGQGHASVGEAREGGG 455
The following BLAST results are available for this feature:
BLAST of NO18G01510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23356.12.300e-10065.63hypothetical protein Naga_100057g23 [Nannochlorops... [more]
EWM23357.12.300e-10065.63hypothetical protein Naga_100057g23 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004006NSK004006Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01510.1NO18G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608037gene_9080Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g23gene7092Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01510.1NO18G01510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01510 ID=NO18G01510|Name=NO18G01510|organism=Nannochloropsis oceanica|type=gene|length=2164bp
ATGTCTTGGCACGGACAGgtatgtgaggacaggggaggggaggagggatg
aggccggtggtaatgatgatgcttgatccttgggtgggagcctgacaaac
agatattctatgccctcccttcagTGCCAGGAACGGGCAGACGACAGGAA
AGAGTGGTCTGCATTCAGCTTAAgtgggtggcatttgcttgacgtggagg
gaaaagtgagagggccatcgttataataacagtttccgcgctacccaccc
accacaccaccaacgcacagGCCCCGCCACCACCGCCACCACCGCCCCCT
CCTCCCCCCCCGCCTCCTCCTCCTCCTCCCCCCCCCCGCCTCCTCCTCCT
CCTCCCCCCCCCCGCCTCCTCCTCCCCCCCTCCTCCTCCCCCTCCGCCTC
ATACACCTCTTCCTCCCCCCCCCCTCCTTCCCTCCGTCCAGCTCCTCCTG
CAAGCAGCACGCGAACAAGCTTAAGCTCCTCGTCATCTCAACGCCCTCTT
TCATCTTCCTCCCACAGTAAGCCTTCTTTGTCCTCTATCAACGGTACAGG
AAAAAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAAGCGTCCCCGCGATG
GGCAGCATGGTCAGCAACCCCCCCGTCACCTCAGCGCCACAGCCAGCAGC
AGCAGCAAAACCGTGGAACCCCACGCCTACAAAGACAAGCGCTCACGGGC
TCACCCTCCATCATCCTCCGCTCCCAAACACCCACCCGTCCAACTCGCTC
GCTGGCGGGACGCTTTACGGAGCGACTTTATTGTCGACATGCAATTTCAA
GTTCCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCTCACTCTCGACAG
CCTGGCGAACCTCGGCGATTTAATCTCTTACAAAGACTCGGTGCCCTTGG
CTTCCCAGTTCAAATATGCCTTGCACTCGGACATCTCCCTTGGGATAGAA
ATAGATACAATCGACAGGAAGAAGTGGCAGCCACCCCCCGCTTCCTCCCT
CCCGCCTTCGCTTCACCCCGATGACATGGCATTGCTAGAATGGGACTTGT
TCAAGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAGGAGGCAGGGAGC
GAAGCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGATACGGGAGGGGT
GGCGACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGAGGCCGAGGTATG
AGACGACGGTGACTTACGATTGTCAGGAGGAAAGGGAGGGAGGGAGACAT
GGGAGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGAGGACGAGGAAGA
GGAGGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGAGTCGACAAGAAG
GATGGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCAAGGCGAGGGGAG
GGATTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCTGTGGGTCGCGGA
GATAGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGGTGGTGGTTCATT
TTGGCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCCATGGAGGCGCCC
TTGTTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGTGCACGGGACGAC
GGTCAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGACGGCAGAGGCGG
CGAGAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAACCTGCGCGGTAT
TATCAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGGAGAAGCAGCACC
TGTTGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTATTATTGGTACAGC
CGGAGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCGAACGTGAAGGTT
AAGAAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAGAGGGGTGCAATT
GGTTCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAAGGGTGATGAAGT
TGATGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAATACTTGAAGTGA
AGGGAGGTGGAGGGAAGGAGGGGAGGAAGACTAGCGGACCGGGTTGCAAA
TGAGGAGATTTTTCTAAGTAGCTTATGACATGGAAGAGAGAGAGGATGAT
GGGGATAAGGCGACAAAATCAAGAATTTAGAGAGGACAAACAAATAATTG
CATTTTCGCTCATG
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protein sequence of NO18G01510.1

>NO18G01510.1-protein ID=NO18G01510.1-protein|Name=NO18G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=599bp
MSWHGQCQERADDRKEWSAFSLSPATTATTAPSSPPASSSSSPPPPPPPP
PPPRLLLPPSSSPSASYTSSSPPPPSLRPAPPASSTRTSLSSSSSQRPLS
SSSHSKPSLSSINGTGKSSSSSSSSGSKRPRDGQHGQQPPRHLSATASSS
SKTVEPHAYKDKRSRAHPPSSSAPKHPPVQLARWRDALRSDFIVDMQFQV
PLPEVPLGPRFLTLDSLANLGDLISYKDSVPLASQFKYALHSDISLGIEI
DTIDRKKWQPPPASSLPPSLHPDDMALLEWDLFKGKQKRAGEDGEEAGSE
AGREAGGEREEDTGGVATAGQVAAPWMLRPRYETTVTYDCQEEREGGRHG
RRKNPPKAEGGEDEEEEEEQGGAEVFDESRQEGWEAAIARTFDEARRGEG
LAPREEGGKGPLWVAEIVPDLEQWANELVVVHFGNELRGREEEAAMEAPL
FVLEGGREEGLVHGTTVKAGYMRGRGHVTAEAARVGGGVVSKAFEPARYY
QLEVTRTDGGGGEAAPVEGDQQQQQYLLLLVQPETGVVSMCPTVANVKVK
KVDRAASGKPARGVQLVHRPLGEEEAMGRVMKLMKAGLEEEEAVEYLK*
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Synonyms
Publications