NO18G01510.1, NO18G01510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01510.1
Unique NameNO18G01510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1961
Alignment locationchr18:493359..495522 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:493359..495522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01510.1 vs.
Match: EWM23357.1 (hypothetical protein Naga_100057g23 [Nannochloropsis gaditana])

HSP 1 Score: 423.3 bits (1087), Expect = 1.200e-114
Identity = 265/460 (57.61%), Postives = 315/460 (68.48%), Query Frame = 0 
Query:   32 PSSPPASSSSSPPPPPPPPPPPRLLLPPSSSPSASYTSSSPPPPSLRPAPPASSTRTSLSSSSSQRPLSSSSHSKPSLSSINGTGKSSSSSSSSGSKRPRDGQHGQQPPRHLSATASSSSKTVEPHAYKDKRSRAHPPSSSAPKHPPVQLARWRDALRSDFIVDMQFQVPLPEVPLGPRFLTLDSLANLGDLISYKDSVPLASQFKYALHSDISLGIEIDTIDRKKWQPPPA--SSLPPSLHPDDMALLEWDLFKGKQKRAGEDGEEAGSEAGREAGGEREEDTGGVATAGQVAAPWMLRPRYETTVTYDCQEEREGGRHGRRKNPPKAEGGEDEEEEEEQGGAEVFDESRQEGWEAAIARTFDEARRGEGLAPREEGGKGPLWVAEIVPDLEQWANELVVVHFGNELRGREEEAAMEAPLFVLEGGRE-EGLVHGTTVKAGYMRGRGHVTAEAARVGGG 489
            P  PP SSS+ PPPPPPPPPPP    PP S+P        PPPP      P  ++  + S++       SS HS    +S NG+  +  +  + G KRPR    GQ PP HL+A  +++ K+          +R    +S      PVQL+RWRDA+RSDF+VD++FQ+PLPEVPLGPRFLT+DSLANLGDL+ Y++ VPLAS+FKY LHSDISLG+EIDTIDRKKWQ P +  +SLPPSLHPDD A LEW+LF+G+QKR  EDG     E GRE G    EDT GVATA  VAAPWMLRPRYET VTYD Q+ REGG    RK       G  E EE E+ G EV DE+RQEGWEAAIAR+F+EA+RGEGL PRE G + P WVAE+VPD  QWA+EL+VV FGNE+RGREEEAA EAPLF +EGGRE EG   G TVKAGY RG+GH +   AR GGG
Sbjct:   34 PPPPPPSSSAFPPPPPPPPPPPPPPPPPRSAPPL------PPPPQ-----PPGTSGANTSAAPQDGSSFSSFHSDGKPASANGSTHAGPTKHAPG-KRPRP---GQPPPSHLAAATTAAHKS-------QAGTRGRGGASGGSTSAPVQLSRWRDAIRSDFVVDLKFQLPLPEVPLGPRFLTVDSLANLGDLVRYREVVPLASRFKYPLHSDISLGVEIDTIDRKKWQAPVSNGASLPPSLHPDDAAFLEWELFQGRQKREAEDG-----EGGREGG----EDTEGVATAADVAAPWMLRPRYETAVTYDSQQGREGGGAQGRK-------GRAEGEEGEEDGREVLDETRQEGWEAAIARSFEEAQRGEGLGPREAGERKPAWVAELVPDAGQWASELMVVQFGNEVRGREEEAAQEAPLFAVEGGREGEGWGLGRTVKAGYYRGQGHASVGEAREGGG 455
The following BLAST results are available for this feature:
BLAST of NO18G01510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23357.11.200e-11457.61hypothetical protein Naga_100057g23 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01510NO18G01510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01510.1NO18G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01510.1.cds1NO18G01510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01510.1.cds2NO18G01510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G01510.1.cds3NO18G01510.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01510.1 ID=NO18G01510.1|Name=NO18G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1961bp
ATGTCTTGGCACGGACAGTGCCAGGAACGGGCAGACGACAGGAAAGAGTG
GTCTGCATTCAGCTTAAGCCCCGCCACCACCGCCACCACCGCCCCCTCCT
CCCCCCCCGCCTCCTCCTCCTCCTCCCCCCCCCCGCCTCCTCCTCCTCCT
CCCCCCCCCCGCCTCCTCCTCCCCCCCTCCTCCTCCCCCTCCGCCTCATA
CACCTCTTCCTCCCCCCCCCCTCCTTCCCTCCGTCCAGCTCCTCCTGCAA
GCAGCACGCGAACAAGCTTAAGCTCCTCGTCATCTCAACGCCCTCTTTCA
TCTTCCTCCCACAGTAAGCCTTCTTTGTCCTCTATCAACGGTACAGGAAA
AAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAAGCGTCCCCGCGATGGGC
AGCATGGTCAGCAACCCCCCCGTCACCTCAGCGCCACAGCCAGCAGCAGC
AGCAAAACCGTGGAACCCCACGCCTACAAAGACAAGCGCTCACGGGCTCA
CCCTCCATCATCCTCCGCTCCCAAACACCCACCCGTCCAACTCGCTCGCT
GGCGGGACGCTTTACGGAGCGACTTTATTGTCGACATGCAATTTCAAGTT
CCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCTCACTCTCGACAGCCT
GGCGAACCTCGGCGATTTAATCTCTTACAAAGACTCGGTGCCCTTGGCTT
CCCAGTTCAAATATGCCTTGCACTCGGACATCTCCCTTGGGATAGAAATA
GATACAATCGACAGGAAGAAGTGGCAGCCACCCCCCGCTTCCTCCCTCCC
GCCTTCGCTTCACCCCGATGACATGGCATTGCTAGAATGGGACTTGTTCA
AGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAGGAGGCAGGGAGCGAA
GCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGATACGGGAGGGGTGGC
GACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGAGGCCGAGGTATGAGA
CGACGGTGACTTACGATTGTCAGGAGGAAAGGGAGGGAGGGAGACATGGG
AGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGAGGACGAGGAAGAGGA
GGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGAGTCGACAAGAAGGAT
GGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCAAGGCGAGGGGAGGGA
TTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCTGTGGGTCGCGGAGAT
AGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGGTGGTGGTTCATTTTG
GCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCCATGGAGGCGCCCTTG
TTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGTGCACGGGACGACGGT
CAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGACGGCAGAGGCGGCGA
GAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAACCTGCGCGGTATTAT
CAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGGAGAAGCAGCACCTGT
TGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTATTATTGGTACAGCCGG
AGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCGAACGTGAAGGTTAAG
AAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAGAGGGGTGCAATTGGT
TCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAAGGGTGATGAAGTTGA
TGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAATACTTGAAGTGAAGG
GAGGTGGAGGGAAGGAGGGGAGGAAGACTAGCGGACCGGGTTGCAAATGA
GGAGATTTTTCTAAGTAGCTTATGACATGGAAGAGAGAGAGGATGATGGG
GATAAGGCGACAAAATCAAGAATTTAGAGAGGACAAACAAATAATTGCAT
TTTCGCTCATG
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protein sequence of NO18G01510.1

>NO18G01510.1-protein ID=NO18G01510.1-protein|Name=NO18G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=599bp
MSWHGQCQERADDRKEWSAFSLSPATTATTAPSSPPASSSSSPPPPPPPP
PPPRLLLPPSSSPSASYTSSSPPPPSLRPAPPASSTRTSLSSSSSQRPLS
SSSHSKPSLSSINGTGKSSSSSSSSGSKRPRDGQHGQQPPRHLSATASSS
SKTVEPHAYKDKRSRAHPPSSSAPKHPPVQLARWRDALRSDFIVDMQFQV
PLPEVPLGPRFLTLDSLANLGDLISYKDSVPLASQFKYALHSDISLGIEI
DTIDRKKWQPPPASSLPPSLHPDDMALLEWDLFKGKQKRAGEDGEEAGSE
AGREAGGEREEDTGGVATAGQVAAPWMLRPRYETTVTYDCQEEREGGRHG
RRKNPPKAEGGEDEEEEEEQGGAEVFDESRQEGWEAAIARTFDEARRGEG
LAPREEGGKGPLWVAEIVPDLEQWANELVVVHFGNELRGREEEAAMEAPL
FVLEGGREEGLVHGTTVKAGYMRGRGHVTAEAARVGGGVVSKAFEPARYY
QLEVTRTDGGGGEAAPVEGDQQQQQYLLLLVQPETGVVSMCPTVANVKVK
KVDRAASGKPARGVQLVHRPLGEEEAMGRVMKLMKAGLEEEEAVEYLK*
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mRNA from alignment at chr18:493359..495522+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01510.1 ID=NO18G01510.1|Name=NO18G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2164bp|location=Sequence derived from alignment at chr18:493359..495522+ (Nannochloropsis oceanica)
ATGTCTTGGCACGGACAGGTATGTGAGGACAGGGGAGGGGAGGAGGGATG
AGGCCGGTGGTAATGATGATGCTTGATCCTTGGGTGGGAGCCTGACAAAC
AGATATTCTATGCCCTCCCTTCAGTGCCAGGAACGGGCAGACGACAGGAA
AGAGTGGTCTGCATTCAGCTTAAGTGGGTGGCATTTGCTTGACGTGGAGG
GAAAAGTGAGAGGGCCATCGTTATAATAACAGTTTCCGCGCTACCCACCC
ACCACACCACCAACGCACAGGCCCCGCCACCACCGCCACCACCGCCCCCT
CCTCCCCCCCCGCCTCCTCCTCCTCCTCCCCCCCCCCGCCTCCTCCTCCT
CCTCCCCCCCCCCGCCTCCTCCTCCCCCCCTCCTCCTCCCCCTCCGCCTC
ATACACCTCTTCCTCCCCCCCCCCTCCTTCCCTCCGTCCAGCTCCTCCTG
CAAGCAGCACGCGAACAAGCTTAAGCTCCTCGTCATCTCAACGCCCTCTT
TCATCTTCCTCCCACAGTAAGCCTTCTTTGTCCTCTATCAACGGTACAGG
AAAAAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAAGCGTCCCCGCGATG
GGCAGCATGGTCAGCAACCCCCCCGTCACCTCAGCGCCACAGCCAGCAGC
AGCAGCAAAACCGTGGAACCCCACGCCTACAAAGACAAGCGCTCACGGGC
TCACCCTCCATCATCCTCCGCTCCCAAACACCCACCCGTCCAACTCGCTC
GCTGGCGGGACGCTTTACGGAGCGACTTTATTGTCGACATGCAATTTCAA
GTTCCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCTCACTCTCGACAG
CCTGGCGAACCTCGGCGATTTAATCTCTTACAAAGACTCGGTGCCCTTGG
CTTCCCAGTTCAAATATGCCTTGCACTCGGACATCTCCCTTGGGATAGAA
ATAGATACAATCGACAGGAAGAAGTGGCAGCCACCCCCCGCTTCCTCCCT
CCCGCCTTCGCTTCACCCCGATGACATGGCATTGCTAGAATGGGACTTGT
TCAAGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAGGAGGCAGGGAGC
GAAGCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGATACGGGAGGGGT
GGCGACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGAGGCCGAGGTATG
AGACGACGGTGACTTACGATTGTCAGGAGGAAAGGGAGGGAGGGAGACAT
GGGAGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGAGGACGAGGAAGA
GGAGGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGAGTCGACAAGAAG
GATGGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCAAGGCGAGGGGAG
GGATTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCTGTGGGTCGCGGA
GATAGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGGTGGTGGTTCATT
TTGGCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCCATGGAGGCGCCC
TTGTTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGTGCACGGGACGAC
GGTCAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGACGGCAGAGGCGG
CGAGAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAACCTGCGCGGTAT
TATCAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGGAGAAGCAGCACC
TGTTGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTATTATTGGTACAGC
CGGAGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCGAACGTGAAGGTT
AAGAAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAGAGGGGTGCAATT
GGTTCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAAGGGTGATGAAGT
TGATGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAATACTTGAAGTGA
AGGGAGGTGGAGGGAAGGAGGGGAGGAAGACTAGCGGACCGGGTTGCAAA
TGAGGAGATTTTTCTAAGTAGCTTATGACATGGAAGAGAGAGAGGATGAT
GGGGATAAGGCGACAAAATCAAGAATTTAGAGAGGACAAACAAATAATTG
CATTTTCGCTCATG
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Coding sequence (CDS) from alignment at chr18:493359..495522+

>NO18G01510.1 ID=NO18G01510.1|Name=NO18G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=1797bp|location=Sequence derived from alignment at chr18:493359..495522+ (Nannochloropsis oceanica)
ATGTCTTGGCACGGACAGTGCCAGGAACGGGCAGACGACAGGAAAGAGTG
GTCTGCATTCAGCTTAAGCCCCGCCACCACCGCCACCACCGCCCCCTCCT
CCCCCCCCGCCTCCTCCTCCTCCTCCCCCCCCCCGCCTCCTCCTCCTCCT
CCCCCCCCCCGCCTCCTCCTCCCCCCCTCCTCCTCCCCCTCCGCCTCATA
CACCTCTTCCTCCCCCCCCCCTCCTTCCCTCCGTCCAGCTCCTCCTGCAA
GCAGCACGCGAACAAGCTTAAGCTCCTCGTCATCTCAACGCCCTCTTTCA
TCTTCCTCCCACAGTAAGCCTTCTTTGTCCTCTATCAACGGTACAGGAAA
AAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAAGCGTCCCCGCGATGGGC
AGCATGGTCAGCAACCCCCCCGTCACCTCAGCGCCACAGCCAGCAGCAGC
AGCAAAACCGTGGAACCCCACGCCTACAAAGACAAGCGCTCACGGGCTCA
CCCTCCATCATCCTCCGCTCCCAAACACCCACCCGTCCAACTCGCTCGCT
GGCGGGACGCTTTACGGAGCGACTTTATTGTCGACATGCAATTTCAAGTT
CCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCTCACTCTCGACAGCCT
GGCGAACCTCGGCGATTTAATCTCTTACAAAGACTCGGTGCCCTTGGCTT
CCCAGTTCAAATATGCCTTGCACTCGGACATCTCCCTTGGGATAGAAATA
GATACAATCGACAGGAAGAAGTGGCAGCCACCCCCCGCTTCCTCCCTCCC
GCCTTCGCTTCACCCCGATGACATGGCATTGCTAGAATGGGACTTGTTCA
AGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAGGAGGCAGGGAGCGAA
GCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGATACGGGAGGGGTGGC
GACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGAGGCCGAGGTATGAGA
CGACGGTGACTTACGATTGTCAGGAGGAAAGGGAGGGAGGGAGACATGGG
AGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGAGGACGAGGAAGAGGA
GGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGAGTCGACAAGAAGGAT
GGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCAAGGCGAGGGGAGGGA
TTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCTGTGGGTCGCGGAGAT
AGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGGTGGTGGTTCATTTTG
GCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCCATGGAGGCGCCCTTG
TTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGTGCACGGGACGACGGT
CAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGACGGCAGAGGCGGCGA
GAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAACCTGCGCGGTATTAT
CAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGGAGAAGCAGCACCTGT
TGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTATTATTGGTACAGCCGG
AGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCGAACGTGAAGGTTAAG
AAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAGAGGGGTGCAATTGGT
TCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAAGGGTGATGAAGTTGA
TGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAATACTTGAAGTGA
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Synonyms
Publications