NO18G01020, NO18G01020 (gene) Nannochloropsis oceanica

Overview
NameNO18G01020
Unique NameNO18G01020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1500
Alignment locationchr18:362729..364228 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:362729..364228 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G01020 vs. NCBI_GenBank
Match: EWM23304.1 (hypothetical protein Naga_100053g32 [Nannochloropsis gaditana])

HSP 1 Score: 103.6 bits (257), Expect = 1.800e-18
Identity = 139/494 (28.14%), Postives = 199/494 (40.28%), Query Frame = 0 
Query:   12 IRLPFLTSIAATGD-VHGQERNYKYYAQMSQRAFLQDVAQQCGVDSIELVSSRDLGVRIVASSRAANAQAVAAVSCLLLGYCHGRARPALLMVPLSHADKLRMELPNIQSEHRNVQILAGILIAPAEFIPVLVAPSPSLSAVEAEARVGQTVRR-LQYMLFAAENKYPFCQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPWGCVVEEKPQERSNILGIQEQQARTIYRTHVLPVWSASVTIIPSPSLGASSLPL---WQSHPSSQSISFPARPLPPASLLQ----VLHHHYGLVPAEPESNGRDFFQICSLLVHGIPDLSAQVRESIASAISMHEDLLLYAAAAVTGSANMESVAHATTAAAVSKAAKKYLQIIRSDWGFAGGRLEMEAAARFYGFHLAVFDAEAPNLLHFHTRLPFPSPGCGGGNDGDERL-----VSLLYHRGMCWMLLRKEEAGRAGGGVEEMETEVVAVTGVEKDKDMHDLSISLQSV 492
            IRLPF+++I++  D +   ++NY +YAQ+SQR  + DVA QCGVDSIE +S R+L +R+VA S+ AN QA+ A+S LL        +P  L        K      N Q++ R+V+++ G   +  + +    A   + S     A VG  +   L        N  P  Q                             SPWG       +   N        +        L  W + +   P       S P    WQ+  +S S+    RP    + LQ    +L   +GL    P+S GR F +  SL V+G P LSAQVR ++   IS H  LL  A     G   + +  HA   AA   A         S  G     LEM A A  Y   + ++DA     + F    PFPS          E L      SLL   G  W L            +    T++  VT      +++DLS+S+QS+
Sbjct:    9 IRLPFISNISSNSDEIEFLKKNYSFYAQVSQRHVIHDVAIQCGVDSIEFISVRNLSIRVVAPSQVANNQAILAISALLRQDRSSGIQPNFL-------SKSTSGYRNPQADVRHVEMMVGDTFSAPQHLSNDQAIHFAGSVGTELALVGNNLPSILPSQSELLNNTAPIPQ------------------------IPLQVSPWG-------KAFPNFQCPSMPPSSPSESMQSLAQWPSFLDKAPPSIPSTLSSPCASPWQA--ASPSL---CRPNLSLTCLQECAWLLQQRFGLTLRFPDSPGRCFLEEISLAVYGTPSLSAQVRATMDRCISTHGGLLYQAP---PGGLGLHAGVHAGAIAAGQNAGPPL-----SGRGPTVESLEMAAVAHGYSIVITIYDAVEQTRVSFR---PFPSM---------EALTPPPEASLLAVGGRYWQL----------EDLAPPATDMETVT----PSELNDLSLSMQSI 425
The following BLAST results are available for this feature:
BLAST of NO18G01020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23304.11.800e-1828.14hypothetical protein Naga_100053g32 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003956NSK003956Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01020.1NO18G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609101gene_9542Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100053g32gene7140Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01020.1NO18G01020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01020 ID=NO18G01020|Name=NO18G01020|organism=Nannochloropsis oceanica|type=gene|length=1500bp
ATGCAATCGGTTCCATTGCAGCCATCCATCCGCATCCGTCTTCCCTTTCT
GACCAGCATTGCAGCCACAGGTGACGTTCACGGGCAGGAAAGGAACTACA
AATACTATGCCCAGATGTCCCAGCGGGCCTTCCTCCAAGACGTAGCCCAG
CAATGCGGCGTGGACTCGATTGAGCTTGTGTCTTCACGAGATTTGGGCGT
GCGAATTGTGGCATCGTCTCGGGCGGCCAATGCTCAAGCCGTGGCAGCCG
TGTCATGCCTTTTGCTTGGTTACTGCCACGGTCGGGCGAGGCCCGCATTG
CTAATGGTGCCCCTCTCCCACGCAGATAAACTACGCATGGAGCTGCCAAA
CATTCAATCGGAGCATAGGAATGTACAGATCTTAGCAGGGATATTAATTG
CCCCCGCAGAATTTATTCCAGTGCTGGTTGCGCCGTCACCCTCCTTGTCT
GCGGTCGAGGCGGAAGCGCGAGTGGGTCAGACCGTCCGGCGATTGCAATA
CATGCTGTTTGCGGCGGAAAATAAATACCCGTTCTGCCAGCAGCAGCAAG
AGCAGCAGCAAAATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
AATCAGCAGCAGCAGCAGCTGTTGGTCTCTCCTTGGGGTTGTGTGGTGGA
AGAGAAACCACAAGAGCGGTCAAATATTCTCGGGATCCAGGAGCAGCAAG
CTAGAACCATTTACCGTACCCATGTACTGCCAGTATGGAGTGCCTCTGTA
ACCATAATACCATCACCGTCATTGGGTGCGTCTTCTCTTCCCTTGTGGCA
ATCACACCCTTCATCTCAATCTATCTCCTTCCCGGCAAGGCCGCTCCCAC
CGGCTTCCCTGCTGCAAGTCTTACACCACCACTATGGGCTCGTTCCCGCC
GAGCCCGAGAGTAATGGCCGAGACTTCTTCCAGATATGTAGTTTATTGGT
GCATGGGATACCTGATCTGAGTGCACAAGTCCGTGAATCTATCGCATCGG
CTATCTCGATGCATGAAGATCTTCTGCTCTATGCCGCGGCTGCAGTTACC
GGCTCGGCCAATATGGAGTCAGTTGCACATGCTACCACAGCTGCTGCTGT
CTCTAAAGCTGCTAAAAAATACCTGCAAATTATACGCAGTGATTGGGGTT
TTGCTGGAGGGAGACTTGAGATGGAAGCGGCTGCTAGATTTTATGGGTTT
CATCTTGCCGTTTTTGACGCGGAGGCTCCGAATCTTCTGCATTTTCACAC
GCGATTACCGTTTCCTTCGCCCGGTTGTGGTGGCGGTAACGATGGTGATG
AAAGGCTCGTGTCCTTGCTGTATCACCGCGGAATGTGCTGGATGCTTCTG
AGAAAAGAAGAGGCCGGAAGAGCGGGAGGAGGGGTGGAGGAGATGGAGAC
AGAGGTGGTGGCGGTGACGGGAGTCGAGAAAGATAAAGACATGCATGATT
TGTCCATTTCGTTACAGTCGGTGCTTAGTGAGGGCATGTCCGACGCGTGA
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protein sequence of NO18G01020.1

>NO18G01020.1-protein ID=NO18G01020.1-protein|Name=NO18G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MQSVPLQPSIRIRLPFLTSIAATGDVHGQERNYKYYAQMSQRAFLQDVAQ
QCGVDSIELVSSRDLGVRIVASSRAANAQAVAAVSCLLLGYCHGRARPAL
LMVPLSHADKLRMELPNIQSEHRNVQILAGILIAPAEFIPVLVAPSPSLS
AVEAEARVGQTVRRLQYMLFAAENKYPFCQQQQEQQQNQQQQQQQQQQQQ
NQQQQQLLVSPWGCVVEEKPQERSNILGIQEQQARTIYRTHVLPVWSASV
TIIPSPSLGASSLPLWQSHPSSQSISFPARPLPPASLLQVLHHHYGLVPA
EPESNGRDFFQICSLLVHGIPDLSAQVRESIASAISMHEDLLLYAAAAVT
GSANMESVAHATTAAAVSKAAKKYLQIIRSDWGFAGGRLEMEAAARFYGF
HLAVFDAEAPNLLHFHTRLPFPSPGCGGGNDGDERLVSLLYHRGMCWMLL
RKEEAGRAGGGVEEMETEVVAVTGVEKDKDMHDLSISLQSVLSEGMSDA*
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Synonyms
Publications