NO18G01020.1, NO18G01020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G01020.1
Unique NameNO18G01020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1500
Alignment locationchr18:362729..364228 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:362729..364228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G01020.1 vs.
Match: EWM23304.1 (hypothetical protein Naga_100053g32 [Nannochloropsis gaditana])

HSP 1 Score: 92.0 bits (227), Expect = 5.500e-15
Identity = 141/493 (28.60%), Postives = 202/493 (40.97%), Query Frame = 0 
Query:   12 IRLPFLTSIAATGD-VHGQERNYKYYAQMSQRAFLQDVAQQCGVDSIELVSSRDLGVRIVASSRAANAQAVAAVSCLLLGYCHGRARPALLMVPLSHADKLRMELPNIQSEHRNVQILAGILIAPAEFIPVLVAPSPSLSAVEAEARVGQTVRRLQYMLFAAENKYPFCQQQQEQQQNQQQQQQQQQQQQNQQQQQLLVSPWGCVVEEKPQERSNILGIQEQQARTIYRTHVLPVWSASVTIIPSPSLGASSLPL---WQSHPSSQSISFPARPLPPASLLQ----VLHHHYGLVPAEPESNGRDFFQICSLLVHGIPDLSAQVRESIASAISMHEDLLLYAAAAVTGSANMESVAHATTAAAVSKAAKKYLQIIRSDWGFAGGRLEMEAAARFYGFHLAVFDAEAPNLLHFHTRLPFPSPGCGGGNDGDERL-----VSLLYHRGMCWMLLRKEEAGRAGGGVEEMETEVVAVTGVEKDKDMHDLSISLQSV 492
            IRLPF+++I++  D +   ++NY +YAQ+SQR  + DVA QCGVDSIE +S R+L +R+VA S+ AN QA+ A+S LL        +P  L        K      N Q++ R+V+++ G   +  + +        +  A+     VG         L    N  P     Q +  N      Q   Q         VSPWG       +   N        +        L  W + +   P       S P    WQ+  +S S+    RP    + LQ    +L   +GL    P+S GR F +  SL V+G P LSAQVR ++   IS H  LL  A     G   + +  HA   AA   A         S  G     LEM A A  Y   + ++DA     + F    PFPS          E L      SLL   G  W L            +    T++  VT      +++DLS+S+QS+
Sbjct:    9 IRLPFISNISSNSDEIEFLKKNYSFYAQVSQRHVIHDVAIQCGVDSIEFISVRNLSIRVVAPSQVANNQAILAISALLRQDRSSGIQPNFL-------SKSTSGYRNPQADVRHVEMMVGDTFSAPQHL-------SNDQAIHFAGSVGTE-------LALVGNNLPSILPSQSELLNNTAPIPQIPLQ---------VSPWG-------KAFPNFQCPSMPPSSPSESMQSLAQWPSFLDKAPPSIPSTLSSPCASPWQA--ASPSL---CRPNLSLTCLQECAWLLQQRFGLTLRFPDSPGRCFLEEISLAVYGTPSLSAQVRATMDRCISTHGGLLYQAP---PGGLGLHAGVHAGAIAAGQNAGPPL-----SGRGPTVESLEMAAVAHGYSIVITIYDAVEQTRVSFR---PFPSM---------EALTPPPEASLLAVGGRYWQL----------EDLAPPATDMETVT----PSELNDLSLSMQSI 425
The following BLAST results are available for this feature:
BLAST of NO18G01020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23304.15.500e-1528.60hypothetical protein Naga_100053g32 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G01020NO18G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G01020.1NO18G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G01020.1.cds1NO18G01020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G01020.1 ID=NO18G01020.1|Name=NO18G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp
ATGCAATCGGTTCCATTGCAGCCATCCATCCGCATCCGTCTTCCCTTTCT
GACCAGCATTGCAGCCACAGGTGACGTTCACGGGCAGGAAAGGAACTACA
AATACTATGCCCAGATGTCCCAGCGGGCCTTCCTCCAAGACGTAGCCCAG
CAATGCGGCGTGGACTCGATTGAGCTTGTGTCTTCACGAGATTTGGGCGT
GCGAATTGTGGCATCGTCTCGGGCGGCCAATGCTCAAGCCGTGGCAGCCG
TGTCATGCCTTTTGCTTGGTTACTGCCACGGTCGGGCGAGGCCCGCATTG
CTAATGGTGCCCCTCTCCCACGCAGATAAACTACGCATGGAGCTGCCAAA
CATTCAATCGGAGCATAGGAATGTACAGATCTTAGCAGGGATATTAATTG
CCCCCGCAGAATTTATTCCAGTGCTGGTTGCGCCGTCACCCTCCTTGTCT
GCGGTCGAGGCGGAAGCGCGAGTGGGTCAGACCGTCCGGCGATTGCAATA
CATGCTGTTTGCGGCGGAAAATAAATACCCGTTCTGCCAGCAGCAGCAAG
AGCAGCAGCAAAATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
AATCAGCAGCAGCAGCAGCTGTTGGTCTCTCCTTGGGGTTGTGTGGTGGA
AGAGAAACCACAAGAGCGGTCAAATATTCTCGGGATCCAGGAGCAGCAAG
CTAGAACCATTTACCGTACCCATGTACTGCCAGTATGGAGTGCCTCTGTA
ACCATAATACCATCACCGTCATTGGGTGCGTCTTCTCTTCCCTTGTGGCA
ATCACACCCTTCATCTCAATCTATCTCCTTCCCGGCAAGGCCGCTCCCAC
CGGCTTCCCTGCTGCAAGTCTTACACCACCACTATGGGCTCGTTCCCGCC
GAGCCCGAGAGTAATGGCCGAGACTTCTTCCAGATATGTAGTTTATTGGT
GCATGGGATACCTGATCTGAGTGCACAAGTCCGTGAATCTATCGCATCGG
CTATCTCGATGCATGAAGATCTTCTGCTCTATGCCGCGGCTGCAGTTACC
GGCTCGGCCAATATGGAGTCAGTTGCACATGCTACCACAGCTGCTGCTGT
CTCTAAAGCTGCTAAAAAATACCTGCAAATTATACGCAGTGATTGGGGTT
TTGCTGGAGGGAGACTTGAGATGGAAGCGGCTGCTAGATTTTATGGGTTT
CATCTTGCCGTTTTTGACGCGGAGGCTCCGAATCTTCTGCATTTTCACAC
GCGATTACCGTTTCCTTCGCCCGGTTGTGGTGGCGGTAACGATGGTGATG
AAAGGCTCGTGTCCTTGCTGTATCACCGCGGAATGTGCTGGATGCTTCTG
AGAAAAGAAGAGGCCGGAAGAGCGGGAGGAGGGGTGGAGGAGATGGAGAC
AGAGGTGGTGGCGGTGACGGGAGTCGAGAAAGATAAAGACATGCATGATT
TGTCCATTTCGTTACAGTCGGTGCTTAGTGAGGGCATGTCCGACGCGTGA
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protein sequence of NO18G01020.1

>NO18G01020.1-protein ID=NO18G01020.1-protein|Name=NO18G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MQSVPLQPSIRIRLPFLTSIAATGDVHGQERNYKYYAQMSQRAFLQDVAQ
QCGVDSIELVSSRDLGVRIVASSRAANAQAVAAVSCLLLGYCHGRARPAL
LMVPLSHADKLRMELPNIQSEHRNVQILAGILIAPAEFIPVLVAPSPSLS
AVEAEARVGQTVRRLQYMLFAAENKYPFCQQQQEQQQNQQQQQQQQQQQQ
NQQQQQLLVSPWGCVVEEKPQERSNILGIQEQQARTIYRTHVLPVWSASV
TIIPSPSLGASSLPLWQSHPSSQSISFPARPLPPASLLQVLHHHYGLVPA
EPESNGRDFFQICSLLVHGIPDLSAQVRESIASAISMHEDLLLYAAAAVT
GSANMESVAHATTAAAVSKAAKKYLQIIRSDWGFAGGRLEMEAAARFYGF
HLAVFDAEAPNLLHFHTRLPFPSPGCGGGNDGDERLVSLLYHRGMCWMLL
RKEEAGRAGGGVEEMETEVVAVTGVEKDKDMHDLSISLQSVLSEGMSDA*
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mRNA from alignment at chr18:362729..364228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G01020.1 ID=NO18G01020.1|Name=NO18G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp|location=Sequence derived from alignment at chr18:362729..364228- (Nannochloropsis oceanica)
ATGCAATCGGTTCCATTGCAGCCATCCATCCGCATCCGTCTTCCCTTTCT
GACCAGCATTGCAGCCACAGGTGACGTTCACGGGCAGGAAAGGAACTACA
AATACTATGCCCAGATGTCCCAGCGGGCCTTCCTCCAAGACGTAGCCCAG
CAATGCGGCGTGGACTCGATTGAGCTTGTGTCTTCACGAGATTTGGGCGT
GCGAATTGTGGCATCGTCTCGGGCGGCCAATGCTCAAGCCGTGGCAGCCG
TGTCATGCCTTTTGCTTGGTTACTGCCACGGTCGGGCGAGGCCCGCATTG
CTAATGGTGCCCCTCTCCCACGCAGATAAACTACGCATGGAGCTGCCAAA
CATTCAATCGGAGCATAGGAATGTACAGATCTTAGCAGGGATATTAATTG
CCCCCGCAGAATTTATTCCAGTGCTGGTTGCGCCGTCACCCTCCTTGTCT
GCGGTCGAGGCGGAAGCGCGAGTGGGTCAGACCGTCCGGCGATTGCAATA
CATGCTGTTTGCGGCGGAAAATAAATACCCGTTCTGCCAGCAGCAGCAAG
AGCAGCAGCAAAATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
AATCAGCAGCAGCAGCAGCTGTTGGTCTCTCCTTGGGGTTGTGTGGTGGA
AGAGAAACCACAAGAGCGGTCAAATATTCTCGGGATCCAGGAGCAGCAAG
CTAGAACCATTTACCGTACCCATGTACTGCCAGTATGGAGTGCCTCTGTA
ACCATAATACCATCACCGTCATTGGGTGCGTCTTCTCTTCCCTTGTGGCA
ATCACACCCTTCATCTCAATCTATCTCCTTCCCGGCAAGGCCGCTCCCAC
CGGCTTCCCTGCTGCAAGTCTTACACCACCACTATGGGCTCGTTCCCGCC
GAGCCCGAGAGTAATGGCCGAGACTTCTTCCAGATATGTAGTTTATTGGT
GCATGGGATACCTGATCTGAGTGCACAAGTCCGTGAATCTATCGCATCGG
CTATCTCGATGCATGAAGATCTTCTGCTCTATGCCGCGGCTGCAGTTACC
GGCTCGGCCAATATGGAGTCAGTTGCACATGCTACCACAGCTGCTGCTGT
CTCTAAAGCTGCTAAAAAATACCTGCAAATTATACGCAGTGATTGGGGTT
TTGCTGGAGGGAGACTTGAGATGGAAGCGGCTGCTAGATTTTATGGGTTT
CATCTTGCCGTTTTTGACGCGGAGGCTCCGAATCTTCTGCATTTTCACAC
GCGATTACCGTTTCCTTCGCCCGGTTGTGGTGGCGGTAACGATGGTGATG
AAAGGCTCGTGTCCTTGCTGTATCACCGCGGAATGTGCTGGATGCTTCTG
AGAAAAGAAGAGGCCGGAAGAGCGGGAGGAGGGGTGGAGGAGATGGAGAC
AGAGGTGGTGGCGGTGACGGGAGTCGAGAAAGATAAAGACATGCATGATT
TGTCCATTTCGTTACAGTCGGTGCTTAGTGAGGGCATGTCCGACGCGTGA
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Coding sequence (CDS) from alignment at chr18:362729..364228-

>NO18G01020.1 ID=NO18G01020.1|Name=NO18G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr18:362729..364228- (Nannochloropsis oceanica)
ATGCAATCGGTTCCATTGCAGCCATCCATCCGCATCCGTCTTCCCTTTCT
GACCAGCATTGCAGCCACAGGTGACGTTCACGGGCAGGAAAGGAACTACA
AATACTATGCCCAGATGTCCCAGCGGGCCTTCCTCCAAGACGTAGCCCAG
CAATGCGGCGTGGACTCGATTGAGCTTGTGTCTTCACGAGATTTGGGCGT
GCGAATTGTGGCATCGTCTCGGGCGGCCAATGCTCAAGCCGTGGCAGCCG
TGTCATGCCTTTTGCTTGGTTACTGCCACGGTCGGGCGAGGCCCGCATTG
CTAATGGTGCCCCTCTCCCACGCAGATAAACTACGCATGGAGCTGCCAAA
CATTCAATCGGAGCATAGGAATGTACAGATCTTAGCAGGGATATTAATTG
CCCCCGCAGAATTTATTCCAGTGCTGGTTGCGCCGTCACCCTCCTTGTCT
GCGGTCGAGGCGGAAGCGCGAGTGGGTCAGACCGTCCGGCGATTGCAATA
CATGCTGTTTGCGGCGGAAAATAAATACCCGTTCTGCCAGCAGCAGCAAG
AGCAGCAGCAAAATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
AATCAGCAGCAGCAGCAGCTGTTGGTCTCTCCTTGGGGTTGTGTGGTGGA
AGAGAAACCACAAGAGCGGTCAAATATTCTCGGGATCCAGGAGCAGCAAG
CTAGAACCATTTACCGTACCCATGTACTGCCAGTATGGAGTGCCTCTGTA
ACCATAATACCATCACCGTCATTGGGTGCGTCTTCTCTTCCCTTGTGGCA
ATCACACCCTTCATCTCAATCTATCTCCTTCCCGGCAAGGCCGCTCCCAC
CGGCTTCCCTGCTGCAAGTCTTACACCACCACTATGGGCTCGTTCCCGCC
GAGCCCGAGAGTAATGGCCGAGACTTCTTCCAGATATGTAGTTTATTGGT
GCATGGGATACCTGATCTGAGTGCACAAGTCCGTGAATCTATCGCATCGG
CTATCTCGATGCATGAAGATCTTCTGCTCTATGCCGCGGCTGCAGTTACC
GGCTCGGCCAATATGGAGTCAGTTGCACATGCTACCACAGCTGCTGCTGT
CTCTAAAGCTGCTAAAAAATACCTGCAAATTATACGCAGTGATTGGGGTT
TTGCTGGAGGGAGACTTGAGATGGAAGCGGCTGCTAGATTTTATGGGTTT
CATCTTGCCGTTTTTGACGCGGAGGCTCCGAATCTTCTGCATTTTCACAC
GCGATTACCGTTTCCTTCGCCCGGTTGTGGTGGCGGTAACGATGGTGATG
AAAGGCTCGTGTCCTTGCTGTATCACCGCGGAATGTGCTGGATGCTTCTG
AGAAAAGAAGAGGCCGGAAGAGCGGGAGGAGGGGTGGAGGAGATGGAGAC
AGAGGTGGTGGCGGTGACGGGAGTCGAGAAAGATAAAGACATGCATGATT
TGTCCATTTCGTTACAGTCGGTGCTTAGTGAGGGCATGTCCGACGCGTGA
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Synonyms
Publications