NO18G00660, NO18G00660 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G00660
Unique Name	NO18G00660
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2239
Alignment location	chr18:269373..271611 +

Link to JBrowse

Properties


Property Name	Value
Description	pumilio 4

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:269373..271611 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding
GO:0003723	RNA binding
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold
IPR033133	PUM-HD
IPR001313	Pumilio_RNA-bd_rpt

Homology

[Close]

BLAST of NO18G00660 vs. NCBI_GenBank
Match: EWM23275.1 (Pumilio RNA-binding repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 237.7 bits (605), Expect = 5.900e-59
Identity = 195/202 (96.53%), Postives = 198/202 (98.02%), Query Frame = 0

Query:  168 HAEYAQFLLPQLEFIIHAFVGQGNNVEKFSTHPYGCRVIQRILEHCTGIQKSAILDEIRKCSSTLIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRYTYGKHILVRLEKISGEKLV 370
            H EYA FLLPQLEFII+AFVGQGNNVEKFSTHPYGCRVIQRILEHCTG QKSAILDEIRK SSTLIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+KSSLLQVMVRDPYGNYVVQKILDIADDRQQEALC+YLRSCAPQLRRYTYGKHILVRLEKISGEKLV
Sbjct:   11 HPEYAAFLLPQLEFIINAFVGQGNNVEKFSTHPYGCRVIQRILEHCTGAQKSAILDEIRKSSSTLIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCTYLRSCAPQLRRYTYGKHILVRLEKISGEKLV 212

[Close]

BLAST of NO18G00660 vs. NCBI_GenBank
Match: OQR88901.1 (hypothetical protein THRCLA_10036 [Thraustotheca clavata])

HSP 1 Score: 136.7 bits (343), Expect = 1.400e-28
Identity = 189/357 (52.94%), Postives = 228/357 (63.87%), Query Frame = 0

Query:   12 LDEFRNNTKNRPWDIRDISGDIVEFCQDQHGSRFIQQKLEMATEEEKELIFKEILPRAHTLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKEHAEYAQFLLPQLEFIIHAFVGQGNNVEKFSTHPYGCRVIQRILEHCTGIQKSAILDEIRKCSSTLIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRYTYGKHILVRLEKISGEKL 369
            LDEFR  TK + W++ D  G IVEF +DQHGSRFIQQKLE A  + K+++F EI P A +LM                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +     + Q  + +  FI+ AFVG   NV   +THPYGCRVIQR+LE+C+  Q + IL EI  C   L++DXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                           LQVM++D Y NYVVQK++D+AD  ++E +   +++ A  L+R+ +GKHIL RLEK++G+K+
Sbjct:  443 LDEFRATTKTKKWELIDARGHIVEFAKDQHGSRFIQQKLETAKADIKDIVFSEIYPVALSLMTDVFGNYVIQKFFDYGNPEHLLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPWKASASGSH-QRSIERGNFILSAFVG---NVYSLATHPYGCRVIQRVLENCSEAQMAPILKEIHDCCCLLVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVRFSYHKFASNVIEKCLMYASVNQLHVIVQHVMEPNEHGECPLQVMMKDQYANYVVQKLIDVADAEEREQMVVIIKTQASHLKRFNFGKHILNRLEKLTGQKI 795

[Close]

BLAST of NO18G00660 vs. NCBI_GenBank
Match: CBJ32228.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 133.7 bits (335), Expect = 1.200e-27
Identity = 248/338 (73.37%), Postives = 275/338 (81.36%), Query Frame = 0

Query:   31 GDIVEFCQDQHGSRFIQQKLEMATEEEKELIFKEILPRAHTLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKEHAEYAQFLLPQLEFIIHAFVGQGNNVEKFSTHPYGCRVIQRILEHCTGIQKSAILDEIRKCSSTLIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRYTYGKHILVRLEKISGEKL 369
            G  V+FC+DQHGSRFIQQKLE++T+E+KE  F EILP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +K   +Y   L   ++FII  FVGQ   VEK S H YGCRVIQRILEHC   QK  IL+EI          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      + +SLLQVMV DPY NYVVQKI+D+AD  Q++ +   +++ A QL+RYT+GKHI+ RLEK+SG+K+
Sbjct:  212 GHTVQFCRDQHGSRFIQQKLEVSTDEDKEAFFNEILPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAKTEGQY---LHSHIQFIIDGFVGQ---VEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLYGHSDGTSLLQVMVCDPYANYVVQKIIDVADQEQRQTIIMEIKAHAAQLKRYTFGKHIISRLEKLSGKKM 543

[Close]

BLAST of NO18G00660 vs. NCBI_GenBank
Match: XP_008607233.1 (hypothetical protein SDRG_03378 [Saprolegnia diclina VS20] >EQC39172.1 hypothetical protein SDRG_03378 [Saprolegnia diclina VS20])

HSP 1 Score: 132.1 bits (331), Expect = 3.500e-27
Identity = 198/357 (55.46%), Postives = 235/357 (65.83%), Query Frame = 0

Query:   12 LDEFRNNTKNRPWDIRDISGDIVEFCQDQHGSRFIQQKLEMATEEEKELIFKEILPRAHTLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKEHAEYAQFLLPQLEFIIHAFVGQGNNVEKFSTHPYGCRVIQRILEHCTGIQKSAILDEIRKCSSTLIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRYTYGKHILVRLEKISGEKL 369
            L+EFRN  K++ W++ D  G +VEF +DQHGSRFIQQKLE A  + K+++F EI P A TLM                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +    +          FI+ AF+G   NV   +THPYGCRVIQR+LEHCT  Q + IL EI  C   L+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                             LQVM++D Y NYVVQK++D+AD  ++E +   +++ A  L+R+ +GKHIL RLEK++G+K+
Sbjct:  433 LNEFRNTNKHKKWELLDARGHMVEFAKDQHGSRFIQQKLETAKADIKDIVFAEIYPVALTLMTDVFGNYVIQKFFDFGTPHHVSLLLRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPWTTPRALDVG-------GFILSAFLG---NVYSLATHPYGCRVIQRVLEHCTEAQMAPILKEIHDCCCLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKCLMYASVHQLHVIVAHVMEANDRGECPLQVMMKDQYANYVVQKLIDVADAEERERMVVIIKTQASHLKRFNFGKHILNRLEKLTGQKI 779

[Close]

BLAST of NO18G00660 vs. NCBI_GenBank
Match: CAC48394.1 (putative RNA binding protein [Saprolegnia parasitica])

HSP 1 Score: 131.3 bits (329), Expect = 6.000e-27
Identity = 207/363 (57.02%), Postives = 245/363 (67.49%), Query Frame = 0

Query:    7 APPST-LDEFRNNTKNRPWDIRDISGDIVEFCQDQHGSRFIQQKLEMATEEEKELIFKEILPRAHTLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKEHAEYAQFLLPQLEFIIHAFVGQGNNVEKFSTHPYGCRVIQRILEHCTGIQKSAILDEIRKCSSTLIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRYTYGKHILVRLEKISGEKL 369
            AP S  L++FRN  K++ W++ D  G +VEF +DQHGSRFIQQKLE A  + K+++F EI P A TLM                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +    +          FI+ AF+G   NV   +THPYGCRVIQR+LEHCT  Q + IL EI  C   L+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            LQVM++D Y NYVVQK++D+AD  ++E +   +++ A  L+R+ +GKHIL RLEK++G+K+
Sbjct:  420 APTSVLLNDFRNTNKHKKWELLDARGHMVEFAKDQHGSRFIQQKLETAKADIKDIVFAEIYPVALTLMTDVFGNYVIQKFFDFGTSHHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPWKTPVAMDVG-------GFILSAFLG---NVYSLATHPYGCRVIQRVLEHCTEAQMAPILKEIHDCCCLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCLMYASVHQLHVIVAHVMEANERGECPLQVMMKDQYANYVVQKLIDVADAEERERMXVIIKTQASHLKRFNFGKHILNRLEKLTGQKI 772

[Close]

BLAST of NO18G00660 vs. NCBI_GenBank
Match: XP_012194120.1 (hypothetical protein SPRG_18907 [Saprolegnia parasitica CBS 223.65] >KDO35765.1 hypothetical protein SPRG_18907 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 131.3 bits (329), Expect = 6.000e-27
Identity = 207/363 (57.02%), Postives = 245/363 (67.49%), Query Frame = 0

Query:    7 APPST-LDEFRNNTKNRPWDIRDISGDIVEFCQDQHGSRFIQQKLEMATEEEKELIFKEILPRAHTLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKEHAEYAQFLLPQLEFIIHAFVGQGNNVEKFSTHPYGCRVIQRILEHCTGIQKSAILDEIRKCSSTLIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRYTYGKHILVRLEKISGEKL 369
            AP S  L++FRN  K++ W++ D  G +VEF +DQHGSRFIQQKLE A  + K+++F EI P A TLM                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +    +          FI+ AF+G   NV   +THPYGCRVIQR+LEHCT  Q + IL EI  C   L+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            LQVM++D Y NYVVQK++D+AD  ++E +   +++ A  L+R+ +GKHIL RLEK++G+K+
Sbjct:  419 APTSVLLNDFRNTNKHKKWELLDARGHMVEFAKDQHGSRFIQQKLETAKADIKDIVFAEIYPVALTLMTDVFGNYVIQKFFDFGTSHHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPWKTPVAMDVG-------GFILSAFLG---NVYSLATHPYGCRVIQRVLEHCTEAQMAPILKEIHDCCCLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCLMYASVHQLHVIVAHVMEANERGECPLQVMMKDQYANYVVQKLIDVADAEERERMVVIIKTQASHLKRFNFGKHILNRLEKLTGQKI 771

[Close]

BLAST of NO18G00660 vs. NCBI_GenBank
Match: XP_008864565.1 (hypothetical protein H310_02733 [Aphanomyces invadans] >ETW06490.1 hypothetical protein H310_02733 [Aphanomyces invadans])

HSP 1 Score: 120.9 bits (302), Expect = 8.100e-24
Identity = 103/362 (28.45%), Postives = 140/362 (38.67%), Query Frame = 0

Query:   14 EFRNNTKNRP--WDIRDISGDIVEFCQDQHGSRFIQQKLEMATEEEKELIFKEILPRAHTLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS----KEHAEYAQFLLPQLEFIIHAFVGQGNNVEKFSTHPYGCRVIQRILEHCTGIQKSAILDEIRKCSSTLIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRYTYGKHILVRLEKISGEKLV 370
            +FR  T ++P  W++ D  G IVEF +DQHGSRFIQ KLE A  + K+++F E+ P A  LM                                                                                                 E    A FLL   E          NNV+  STHPYGCRVIQR+LE C+  Q + IL EI+     L+ D  XXXXXXXXXX                                                            LQ+M++D Y NYVVQK++D+AD  +++ + + ++S A  L+RYT+GKHIL RLEK++G+K++
Sbjct:  455 DFRTMTTSKPSKWELVDARGHIVEFSKDQHGSRFIQLKLETAKPDIKDIVFSEVAPVALQLMTDVFGNYVIQKFFDHGNPQHITQLMRVIQGHMLDLALHMYGCRVIQKALESTDDLDLKLDLICELQGHVLHCIKDQNGNHVIQKCIEILPWKVPSVVEDMSRASFLLESFE----------NNVDTMSTHPYGCRVIQRVLEKCSDEQMAPILREIQDSYGLLVNDQYXXXXXXXXXXHGPPSQRTALINRIYPDIIRFSYHKFSSNVIEKCLSYASVKQLRVIMHHILNSSDNGECPLQIMMKDQYANYVVQKLIDVADSTERDKMAAIIKSHAANLKRYTHGKHILNRLEKLTGQKII 806

[Close]

BLAST of NO18G00660 vs. NCBI_GenBank
Match: XP_003059310.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH56442.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 114.4 bits (285), Expect = 7.600e-22
Identity = 215/357 (60.22%), Postives = 252/357 (70.59%), Query Frame = 0

Query:   12 LDEFRNNTKNRPWDIRDISGDIVEFCQDQHGSRFIQQKLEMATEEEKELIFKEILPRAHTLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKEHAEYAQFLLPQLEFIIHAFVGQGNNVEKFSTHPYGCRVIQR-----ILEHCTGIQKS-AILDEIRKCSSTLIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRYTYGKHILVRLEK 363
            L+EF+NN K R +++ D++  +VEF  DQHGSRFIQQKLE A  E+ +L+F E+LP AH LM             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             +++FI+ AF G   NV   STHPYGCRVIQ      +LEHCT  QKS  I+DEI + +++L QD                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   E    LQ M++D + NYVVQK+L++ DD Q++ L + +R     L+++TYGKHI+ R+EK
Sbjct:    5 LEEFKNN-KARRFELGDLAEHVVEFSSDQHGSRFIQQKLETAAPEDAQLVFDEVLPAAHALM-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQFIVEAFYG---NVLSLSTHPYGCRVIQARSIHWVLEHCTPEQKSEGIMDEILREATSLAQDQYGNYVVQHVLQHGGEGERKTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTDENEP-LQAMMKDQFANYVVQKLLEVCDDGQRDQLLTRMRVHLGNLKKFTYGKHIVARVEK 343

[Close]

BLAST of NO18G00660 vs. NCBI_GenBank
Match: DAA24502.1 (TPA: pumilio homolog 2 [Bos taurus])

HSP 1 Score: 113.2 bits (282), Expect = 1.700e-21
Identity = 237/356 (66.57%), Postives = 265/356 (74.44%), Query Frame = 0

Query:   12 LDEFRNNTKNRPWDIRDISGDIVEFCQDQHGSRFIQQKLEMATEEEKELIFKEILPRAHTLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKEHAEYAQFLLPQLEFIIHAFVGQ--GNNVEK---FSTHPYGCRVIQRILEHCTGIQKSAILDEIRKCSSTLIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRYTYGKHILVRLEK 363
            L++FRNN +     +RD+ G IVEF QDQHGSRFIQQKLE AT  E++++F EIL  A+ LM             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                FII AF GQ   +N  K    STHPYGCRVIQRILEHCT  Q   IL+E+ + +  L+Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        S L  M++D Y NYVVQK++D+A+  Q++ +   +R     LR+YTYGKHIL +LEK
Sbjct:    9 LEDFRNN-RFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLM-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIIDAFKGQFISSNCFKVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHISTLRKYTYGKHILAKLEK 350

[Close]

BLAST of NO18G00660 vs. NCBI_GenBank
Match: XP_009835130.1 (hypothetical protein H257_10325 [Aphanomyces astaci] >ETV75496.1 hypothetical protein H257_10325 [Aphanomyces astaci])

HSP 1 Score: 111.3 bits (277), Expect = 6.400e-21
Identity = 88/361 (24.38%), Postives = 133/361 (36.84%), Query Frame = 0

Query:   12 LDEF----RNNTKNRPWDIRDISGDIVEFCQDQHGSRFIQQKLEMATEEEKELIFKEILPRAHTLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKEHAEYAQFLLPQLEFIIHAFVGQGNNVEKFSTHPYGCRVIQRILEHCTGIQKSAILDEIRKCSSTLIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRYTYGKHILVRLEKISGEKL 369
            +D+F    +   K   W++ +  G +VEF +DQ GSRFIQ KLE AT + K+++F EI P A  LM                                                                                               +  A  ++P+  F++ +FV   NNV   STHPYGCRVIQR+LE C+ +Q + +L EI+     L+ D                                                                    +   LQVM++D Y NYVVQK++D+AD  +++ + + +++ A  L+RYT+GKHIL RLE ++G K+
Sbjct:  459 MDDFECRSKATAKPSKWELVEARGHLVEFAKDQDGSRFIQLKLESATPDIKDIVFSEIAPVALQLMTDVFGNYVIQKFFDHGNAHHITQILRVIQGNMLDLAMHMYGCRVIQKALEATDDLPLKLDLICELQGHVLHCIKDQNGNHVVQKVIEILPWKAVPSSVA--MMPRAAFLLESFV---NNVYTMSTHPYGCRVIQRVLEKCSEMQMAPMLCEIQDAYGLLVNDQYGNYVIQHVLKHGPPSERAALINRIYPDIVRLSHHKYASNVIEKCLLYASVGQLRVIMQHILSTDHGECP-LQVMMKDQYANYVVQKLIDVADANERDKMAAIIKTHAAHLKRYTHGKHILNRLENLTGHKI 813

The following BLAST results are available for this feature:

BLAST of NO18G00660 vs. NCBI_GenBank

BLAST of NO18G00660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM23275.1	5.900e-59	96.53	Pumilio RNA-binding repeat containing protein [Nan...	[more]
OQR88901.1	1.400e-28	52.94	hypothetical protein THRCLA_10036 [Thraustotheca c...	[more]
CBJ32228.1	1.200e-27	73.37	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_008607233.1	3.500e-27	55.46	hypothetical protein SDRG_03378 [Saprolegnia dicli...	[more]
CAC48394.1	6.000e-27	57.02	putative RNA binding protein [Saprolegnia parasiti...	[more]
XP_012194120.1	6.000e-27	57.02	hypothetical protein SPRG_18907 [Saprolegnia paras...	[more]
XP_008864565.1	8.100e-24	28.45	hypothetical protein H310_02733 [Aphanomyces invad...	[more]
XP_003059310.1	7.600e-22	60.22	predicted protein [Micromonas pusilla CCMP1545] >E...	[more]
DAA24502.1	1.700e-21	66.57	TPA: pumilio homolog 2 [Bos taurus]	[more]
XP_009835130.1	6.400e-21	24.38	hypothetical protein H257_10325 [Aphanomyces astac...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniR064	ncniR064	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR043	ngnoR043	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO18G00660.1	NO18G00660.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609232	gene_9583	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_101027g1	gene7174	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO18G00660.1	NO18G00660.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO18G00660 ID=NO18G00660|Name=NO18G00660|organism=Nannochloropsis oceanica|type=gene|length=2239bp
ATGCACGATGgtaagcagggagggtagaaaaaagggaggggagggaggga
ggggagggaagcaggggagggagggaaggagggaggggatgtttgtggac
gaatgagtttgaggacgatgactgatccccttcttctctccctccttccc
tccttccctcccttccttcttccctctttctctccctctttctctctctc
tctccttctttctcagGTCTAGGCGCTCCTCCCTCTACACTCGACGAGTT
CCGCAACAACACCAAAAACCGTCCATGGGACATCCGAGATATCTCGGGGG
ATATCGTCGAATTCTGCCAGGATCAACATGGCTCCCGATTCATCCAACAA
AAGCTGGAGATGGCGACGGAGGAAGAGAAGGAGCTGATATTCAAGGAAAT
TCTCCCGCGGGCGCACACGCTAATGACGGACGTTTTCGGGAACTACGTGA
TTCAGAAGgtgcaatctagccctccctcactcactccttccctcccttcc
tctttcctgccatgaatcataaatagcacctgcccttcaacctccactta
cgctccctccctccctccctccctccctccctccctccctcctccgcagG
TCTTGGAACACGGCAATCCGGAGCATCGAGACGTCATCGCCTCCATCCTC
ACAGGCCACGCCGTCCAGCTCGCCCTTCAAATgtaagtccctccctccct
tcatccctccctccttcgtttcccccctcctcatatatatatatatacat
atgtaggtgtgtgtgtgtgcaaatgctattccatgtaaatctctcgctcc
ctgctcatctcacttctccctcctctcctcctccctcccgtcgcagGTAC
GGCTGTCGTGTGATCCAAAAGGCCTTGGAAGTCATCGGGGTTCAGCGTCT
CATTGCCCTGGTATCAGAGTTCGAAGGTCACGTGCTCAAATGCGTGCACG
ACCAAAACGGGAACCATGTCATTCAGAAATGCATCGAGGTGCTCTCGGTC
CGGTCGAAGGAACATGCGGAATACGCGCAATTTCTCCTCCCGCAACTCGA
ATTCATCATTCATGCTTTTGTTGGACAGgtatggatgcaagctccctccc
tctctccctttctagctctctcttcgattttgttctcgaaagcacttcat
ttacttttgtgatttattgatttgtctatttcccttttttttatcgttat
ttgtccatttatttattcattttatttattcatttatttgcttttccagG
GCAACAACGTGGAGAAATTCAGCACCCACCCGTATGGCTGCCGTGTCATC
CAACGGATCCTGGAGCACTGCACGGGCATTCAAAAGAGCGCGATACTCGA
CGAGATCCGCAAATGTTCATCCACGCTCATACAGGACCAATACGGAAATT
ATGTCATTCAACACGTCATGAAGgtgcgtcttttaccactctctcccttc
ctccctccctttctcctatcgttctgcacgacgagatctgcccatgggtt
ttcacgccatttttgtagaatttatgtattttgacttccctctccttgcc
tccctcctttcctccctccctccctccctttcagCATGGCCGCCCCAACG
ACAGGCAGATGGTCATCAATGAGGTCAAGAGCCGGATGCTTGTGTATTCG
CAGCACAAGTTTGCGTCGAATGTGGTGGAGAAATGTCTGCAGgtagggag
ctagggagggaggggacgagggaaggaaggaaggaatgacaggagaatgg
gctatcgagcgggggggtagtgcgggggaggtatggagagagggagggag
gaaagcaggatgggaaagaaggagagcgaggacacatgctcatcttatta
tccccacgccatcgaaaatattcatgcaggcactcctctcccctctattt
ctctatatctatatatagagagatatccacacgtaactcaccctttcccc
cgccctccccttcctccctctctttcagTACGGCTCCAAAGCTGAACGCA
ACGATATCATCGACGAGGTGGTGCGGAGCGTGCTGGAGAAGTCCTCCCTC
CTCCAAGTGATGGTTCGTGACCCCTATGGCAATTACGTCGTTCAGAAAAT
CTTGGACATCGCAGATGACCGGCAACAGGAAGCGCTTTGCTCATACCTGC
GGTCATGCGCGCCCCAGCTGCGAAGGTACACGTACGGGAAGCATATTTTG
GTGCGGTTGGAAAAAATCAGTGGGGAAAAACTGGTGTAG

protein sequence of NO18G00660.1

>NO18G00660.1-protein ID=NO18G00660.1-protein|Name=NO18G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MHDGLGAPPSTLDEFRNNTKNRPWDIRDISGDIVEFCQDQHGSRFIQQKL
EMATEEEKELIFKEILPRAHTLMTDVFGNYVIQKVLEHGNPEHRDVIASI
LTGHAVQLALQMYGCRVIQKALEVIGVQRLIALVSEFEGHVLKCVHDQNG
NHVIQKCIEVLSVRSKEHAEYAQFLLPQLEFIIHAFVGQGNNVEKFSTHP
YGCRVIQRILEHCTGIQKSAILDEIRKCSSTLIQDQYGNYVIQHVMKHGR
PNDRQMVINEVKSRMLVYSQHKFASNVVEKCLQYGSKAERNDIIDEVVRS
VLEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRY
TYGKHILVRLEKISGEKLV*

Synonyms

Publications