NO18G00660.1, NO18G00660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00660.1
Unique NameNO18G00660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1110
Alignment locationchr18:269373..271611 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:269373..271611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00660.1 vs.
Match: CBJ32228.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 424.9 bits (1091), Expect = 2.600e-115
Identity = 209/338 (61.83%), Postives = 259/338 (76.63%), Query Frame = 0 
Query:   31 GDIVEFCQDQHGSRFIQQKLEMATEEEKELIFKEILPRAHTLMTDVFGNYVIQKVLEHGNPEHRDVIASILTGHAVQLALQMYGCRVIQKALEVIGVQRLIALVSEFEGHVLKCVHDQNGNHVIQKCIEVLSVRSKEHAEYAQFLLPQLEFIIHAFVGQGNNVEKFSTHPYGCRVIQRILEHCTGIQKSAILDEIRKCSSTLIQDQYGNYVIQHVMKHGRPNDRQMVINEVKSRMLVYSQHKFASNVVEKCLQYGSKAERNDIIDEVVRSVLEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRYTYGKHILVRLEKISGEKL 369
            G  V+FC+DQHGSRFIQQKLE++T+E+KE  F EILP   +LMTDVFGNYV+QK+ ++G+   R+ +AS L GHAVQL+LQMYGCRV+QKALE   +  LIALVSEF G V+KCV DQNGNHV+QKCIEV+S  +K   +Y   L   ++FII  FVGQ   VEK S H YGCRVIQRILEHC   QK  IL+EI+   S LIQDQYGNYVIQHV+KHGRP DR  ++ EVK  +L YSQHKFASNVVEKCLQYG+K ER  +I  ++    + +SLLQVMV DPY NYVVQKI+D+AD  Q++ +   +++ A QL+RYT+GKHI+ RLEK+SG+K+
Sbjct:  212 GHTVQFCRDQHGSRFIQQKLEVSTDEDKEAFFNEILPHTQSLMTDVFGNYVVQKLFDNGSSAQREALASFLVGHAVQLSLQMYGCRVVQKALEYSSIDTLIALVSEFCGQVMKCVQDQNGNHVVQKCIEVVSTTAKTEGQY---LHSHIQFIIDGFVGQ---VEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQDQYGNYVIQHVLKHGRPTDRGRLMREVKENLLSYSQHKFASNVVEKCLQYGTKEERGVLIQHLLYGHSDGTSLLQVMVCDPYANYVVQKIIDVADQEQRQTIIMEIKAHAAQLKRYTFGKHIISRLEKLSGKKM 543
The following BLAST results are available for this feature:
BLAST of NO18G00660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ32228.12.600e-11561.83conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00660NO18G00660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00660.1NO18G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00660.1.cds1NO18G00660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00660.1.cds2NO18G00660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00660.1.cds3NO18G00660.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00660.1.cds4NO18G00660.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00660.1.cds5NO18G00660.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00660.1.cds6NO18G00660.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00660.1.cds7NO18G00660.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00660.1 ID=NO18G00660.1|Name=NO18G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp
ATGCACGATGGTCTAGGCGCTCCTCCCTCTACACTCGACGAGTTCCGCAA
CAACACCAAAAACCGTCCATGGGACATCCGAGATATCTCGGGGGATATCG
TCGAATTCTGCCAGGATCAACATGGCTCCCGATTCATCCAACAAAAGCTG
GAGATGGCGACGGAGGAAGAGAAGGAGCTGATATTCAAGGAAATTCTCCC
GCGGGCGCACACGCTAATGACGGACGTTTTCGGGAACTACGTGATTCAGA
AGGTCTTGGAACACGGCAATCCGGAGCATCGAGACGTCATCGCCTCCATC
CTCACAGGCCACGCCGTCCAGCTCGCCCTTCAAATGTACGGCTGTCGTGT
GATCCAAAAGGCCTTGGAAGTCATCGGGGTTCAGCGTCTCATTGCCCTGG
TATCAGAGTTCGAAGGTCACGTGCTCAAATGCGTGCACGACCAAAACGGG
AACCATGTCATTCAGAAATGCATCGAGGTGCTCTCGGTCCGGTCGAAGGA
ACATGCGGAATACGCGCAATTTCTCCTCCCGCAACTCGAATTCATCATTC
ATGCTTTTGTTGGACAGGGCAACAACGTGGAGAAATTCAGCACCCACCCG
TATGGCTGCCGTGTCATCCAACGGATCCTGGAGCACTGCACGGGCATTCA
AAAGAGCGCGATACTCGACGAGATCCGCAAATGTTCATCCACGCTCATAC
AGGACCAATACGGAAATTATGTCATTCAACACGTCATGAAGCATGGCCGC
CCCAACGACAGGCAGATGGTCATCAATGAGGTCAAGAGCCGGATGCTTGT
GTATTCGCAGCACAAGTTTGCGTCGAATGTGGTGGAGAAATGTCTGCAGT
ACGGCTCCAAAGCTGAACGCAACGATATCATCGACGAGGTGGTGCGGAGC
GTGCTGGAGAAGTCCTCCCTCCTCCAAGTGATGGTTCGTGACCCCTATGG
CAATTACGTCGTTCAGAAAATCTTGGACATCGCAGATGACCGGCAACAGG
AAGCGCTTTGCTCATACCTGCGGTCATGCGCGCCCCAGCTGCGAAGGTAC
ACGTACGGGAAGCATATTTTGGTGCGGTTGGAAAAAATCAGTGGGGAAAA
ACTGGTGTAG
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protein sequence of NO18G00660.1

>NO18G00660.1-protein ID=NO18G00660.1-protein|Name=NO18G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MHDGLGAPPSTLDEFRNNTKNRPWDIRDISGDIVEFCQDQHGSRFIQQKL
EMATEEEKELIFKEILPRAHTLMTDVFGNYVIQKVLEHGNPEHRDVIASI
LTGHAVQLALQMYGCRVIQKALEVIGVQRLIALVSEFEGHVLKCVHDQNG
NHVIQKCIEVLSVRSKEHAEYAQFLLPQLEFIIHAFVGQGNNVEKFSTHP
YGCRVIQRILEHCTGIQKSAILDEIRKCSSTLIQDQYGNYVIQHVMKHGR
PNDRQMVINEVKSRMLVYSQHKFASNVVEKCLQYGSKAERNDIIDEVVRS
VLEKSSLLQVMVRDPYGNYVVQKILDIADDRQQEALCSYLRSCAPQLRRY
TYGKHILVRLEKISGEKLV*
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mRNA from alignment at chr18:269373..271611+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00660.1 ID=NO18G00660.1|Name=NO18G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2239bp|location=Sequence derived from alignment at chr18:269373..271611+ (Nannochloropsis oceanica)
ATGCACGATGGTAAGCAGGGAGGGTAGAAAAAAGGGAGGGGAGGGAGGGA
GGGGAGGGAAGCAGGGGAGGGAGGGAAGGAGGGAGGGGATGTTTGTGGAC
GAATGAGTTTGAGGACGATGACTGATCCCCTTCTTCTCTCCCTCCTTCCC
TCCTTCCCTCCCTTCCTTCTTCCCTCTTTCTCTCCCTCTTTCTCTCTCTC
TCTCCTTCTTTCTCAGGTCTAGGCGCTCCTCCCTCTACACTCGACGAGTT
CCGCAACAACACCAAAAACCGTCCATGGGACATCCGAGATATCTCGGGGG
ATATCGTCGAATTCTGCCAGGATCAACATGGCTCCCGATTCATCCAACAA
AAGCTGGAGATGGCGACGGAGGAAGAGAAGGAGCTGATATTCAAGGAAAT
TCTCCCGCGGGCGCACACGCTAATGACGGACGTTTTCGGGAACTACGTGA
TTCAGAAGGTGCAATCTAGCCCTCCCTCACTCACTCCTTCCCTCCCTTCC
TCTTTCCTGCCATGAATCATAAATAGCACCTGCCCTTCAACCTCCACTTA
CGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCGCAGG
TCTTGGAACACGGCAATCCGGAGCATCGAGACGTCATCGCCTCCATCCTC
ACAGGCCACGCCGTCCAGCTCGCCCTTCAAATGTAAGTCCCTCCCTCCCT
TCATCCCTCCCTCCTTCGTTTCCCCCCTCCTCATATATATATATATACAT
ATGTAGGTGTGTGTGTGTGCAAATGCTATTCCATGTAAATCTCTCGCTCC
CTGCTCATCTCACTTCTCCCTCCTCTCCTCCTCCCTCCCGTCGCAGGTAC
GGCTGTCGTGTGATCCAAAAGGCCTTGGAAGTCATCGGGGTTCAGCGTCT
CATTGCCCTGGTATCAGAGTTCGAAGGTCACGTGCTCAAATGCGTGCACG
ACCAAAACGGGAACCATGTCATTCAGAAATGCATCGAGGTGCTCTCGGTC
CGGTCGAAGGAACATGCGGAATACGCGCAATTTCTCCTCCCGCAACTCGA
ATTCATCATTCATGCTTTTGTTGGACAGGTATGGATGCAAGCTCCCTCCC
TCTCTCCCTTTCTAGCTCTCTCTTCGATTTTGTTCTCGAAAGCACTTCAT
TTACTTTTGTGATTTATTGATTTGTCTATTTCCCTTTTTTTTATCGTTAT
TTGTCCATTTATTTATTCATTTTATTTATTCATTTATTTGCTTTTCCAGG
GCAACAACGTGGAGAAATTCAGCACCCACCCGTATGGCTGCCGTGTCATC
CAACGGATCCTGGAGCACTGCACGGGCATTCAAAAGAGCGCGATACTCGA
CGAGATCCGCAAATGTTCATCCACGCTCATACAGGACCAATACGGAAATT
ATGTCATTCAACACGTCATGAAGGTGCGTCTTTTACCACTCTCTCCCTTC
CTCCCTCCCTTTCTCCTATCGTTCTGCACGACGAGATCTGCCCATGGGTT
TTCACGCCATTTTTGTAGAATTTATGTATTTTGACTTCCCTCTCCTTGCC
TCCCTCCTTTCCTCCCTCCCTCCCTCCCTTTCAGCATGGCCGCCCCAACG
ACAGGCAGATGGTCATCAATGAGGTCAAGAGCCGGATGCTTGTGTATTCG
CAGCACAAGTTTGCGTCGAATGTGGTGGAGAAATGTCTGCAGGTAGGGAG
CTAGGGAGGGAGGGGACGAGGGAAGGAAGGAAGGAATGACAGGAGAATGG
GCTATCGAGCGGGGGGGTAGTGCGGGGGAGGTATGGAGAGAGGGAGGGAG
GAAAGCAGGATGGGAAAGAAGGAGAGCGAGGACACATGCTCATCTTATTA
TCCCCACGCCATCGAAAATATTCATGCAGGCACTCCTCTCCCCTCTATTT
CTCTATATCTATATATAGAGAGATATCCACACGTAACTCACCCTTTCCCC
CGCCCTCCCCTTCCTCCCTCTCTTTCAGTACGGCTCCAAAGCTGAACGCA
ACGATATCATCGACGAGGTGGTGCGGAGCGTGCTGGAGAAGTCCTCCCTC
CTCCAAGTGATGGTTCGTGACCCCTATGGCAATTACGTCGTTCAGAAAAT
CTTGGACATCGCAGATGACCGGCAACAGGAAGCGCTTTGCTCATACCTGC
GGTCATGCGCGCCCCAGCTGCGAAGGTACACGTACGGGAAGCATATTTTG
GTGCGGTTGGAAAAAATCAGTGGGGAAAAACTGGTGTAG
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Coding sequence (CDS) from alignment at chr18:269373..271611+

>NO18G00660.1 ID=NO18G00660.1|Name=NO18G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr18:269373..271611+ (Nannochloropsis oceanica)
ATGCACGATGGTCTAGGCGCTCCTCCCTCTACACTCGACGAGTTCCGCAA
CAACACCAAAAACCGTCCATGGGACATCCGAGATATCTCGGGGGATATCG
TCGAATTCTGCCAGGATCAACATGGCTCCCGATTCATCCAACAAAAGCTG
GAGATGGCGACGGAGGAAGAGAAGGAGCTGATATTCAAGGAAATTCTCCC
GCGGGCGCACACGCTAATGACGGACGTTTTCGGGAACTACGTGATTCAGA
AGGTCTTGGAACACGGCAATCCGGAGCATCGAGACGTCATCGCCTCCATC
CTCACAGGCCACGCCGTCCAGCTCGCCCTTCAAATGTACGGCTGTCGTGT
GATCCAAAAGGCCTTGGAAGTCATCGGGGTTCAGCGTCTCATTGCCCTGG
TATCAGAGTTCGAAGGTCACGTGCTCAAATGCGTGCACGACCAAAACGGG
AACCATGTCATTCAGAAATGCATCGAGGTGCTCTCGGTCCGGTCGAAGGA
ACATGCGGAATACGCGCAATTTCTCCTCCCGCAACTCGAATTCATCATTC
ATGCTTTTGTTGGACAGGGCAACAACGTGGAGAAATTCAGCACCCACCCG
TATGGCTGCCGTGTCATCCAACGGATCCTGGAGCACTGCACGGGCATTCA
AAAGAGCGCGATACTCGACGAGATCCGCAAATGTTCATCCACGCTCATAC
AGGACCAATACGGAAATTATGTCATTCAACACGTCATGAAGCATGGCCGC
CCCAACGACAGGCAGATGGTCATCAATGAGGTCAAGAGCCGGATGCTTGT
GTATTCGCAGCACAAGTTTGCGTCGAATGTGGTGGAGAAATGTCTGCAGT
ACGGCTCCAAAGCTGAACGCAACGATATCATCGACGAGGTGGTGCGGAGC
GTGCTGGAGAAGTCCTCCCTCCTCCAAGTGATGGTTCGTGACCCCTATGG
CAATTACGTCGTTCAGAAAATCTTGGACATCGCAGATGACCGGCAACAGG
AAGCGCTTTGCTCATACCTGCGGTCATGCGCGCCCCAGCTGCGAAGGTAC
ACGTACGGGAAGCATATTTTGGTGCGGTTGGAAAAAATCAGTGGGGAAAA
ACTGGTGTAG
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Synonyms
Publications