NO18G00490, NO18G00490 (gene) Nannochloropsis oceanica

Overview
NameNO18G00490
Unique NameNO18G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2218
Alignment locationchr18:204114..206331 -

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein L37
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:204114..206331 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR001569Ribosomal_L37e
Homology
[Close]
BLAST of NO18G00490 vs. NCBI_GenBank
Match: XP_005852553.1 (large subunit ribosomal protein L37e [Nannochloropsis gaditana CCMP526] >EKU23279.1 large subunit ribosomal protein L37e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 184.1 bits (466), Expect = 2.000e-43
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0 
Query:    1 MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWSEKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAAAAST 96
            MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKAC SCGFPEAKIRKFNWSEKAKRRKTTGTGR AHLK+LPRRFKNGFREGT+APAKKVAAA S+
Sbjct:    1 MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACGSCGFPEAKIRKFNWSEKAKRRKTTGTGRTAHLKSLPRRFKNGFREGTSAPAKKVAAATSS 95
[Close]
BLAST of NO18G00490 vs. NCBI_GenBank
Match: CEG81571.1 (Putative 60S ribosomal protein L37 [Rhizopus microsporus])

HSP 1 Score: 149.1 bits (375), Expect = 7.200e-33
Identity = 72/91 (79.12%), Postives = 76/91 (83.52%), Query Frame = 0 
Query:    1 MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWSEKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAA 92
            MTKGTSSFGKRHTKTHT CRRCG   FHKQKK C+ CG+P AKIR FNWSEK KRRKTTGTGRMAHLK + RRFKNGFREGT A  + VAA
Sbjct:    1 MTKGTSSFGKRHTKTHTLCRRCGNRAFHKQKKTCAQCGYPSAKIRSFNWSEKGKRRKTTGTGRMAHLKLVHRRFKNGFREGTQAKKQTVAA 91
[Close]
BLAST of NO18G00490 vs. NCBI_GenBank
Match: XP_023465106.1 (hypothetical protein RHIMIDRAFT_257432 [Rhizopus microsporus ATCC 52813] >CEJ03605.1 Putative 60S ribosomal protein L37 [Rhizopus microsporus] >CEI91602.1 Putative 60S ribosomal protein L37 [Rhizopus microsporus] >ORE06056.1 60S ribosomal protein L37 [Rhizopus microsporus var. microsporus] >PHZ11398.1 hypothetical protein RHIMIDRAFT_257432 [Rhizopus microsporus ATCC 52813])

HSP 1 Score: 149.1 bits (375), Expect = 7.200e-33
Identity = 72/91 (79.12%), Postives = 76/91 (83.52%), Query Frame = 0 
Query:    1 MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWSEKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAA 92
            MTKGTSSFGKRHTKTHT CRRCG   FHKQKK C+ CG+P AKIR FNWSEK KRRKTTGTGRMAHLK + RRFKNGFREGT A  + VAA
Sbjct:    1 MTKGTSSFGKRHTKTHTLCRRCGNRAFHKQKKTCAQCGYPSAKIRSFNWSEKGKRRKTTGTGRMAHLKEVHRRFKNGFREGTQAKKQTVAA 91
[Close]
BLAST of NO18G00490 vs. NCBI_GenBank
Match: OBZ87739.1 (putative 60S ribosomal protein L37-A [Choanephora cucurbitarum])

HSP 1 Score: 149.1 bits (375), Expect = 7.200e-33
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 0 
Query:    1 MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWSEKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAA 92
            MTKGTSSFGKRHTKTHT CRRCG  +FHKQKK C+ CG+P AKIR FNWSEK KRRKTTGTGRMAHLK + RRFKNGFREGT   AKKVAA
Sbjct:    1 MTKGTSSFGKRHTKTHTLCRRCGNRSFHKQKKTCAQCGYPAAKIRSFNWSEKGKRRKTTGTGRMAHLKDVQRRFKNGFREGT--QAKKVAA 89
[Close]
BLAST of NO18G00490 vs. NCBI_GenBank
Match: OBZ87850.1 (putative 60S ribosomal protein L37-A [Choanephora cucurbitarum])

HSP 1 Score: 147.5 bits (371), Expect = 2.100e-32
Identity = 73/94 (77.66%), Postives = 80/94 (85.11%), Query Frame = 0 
Query:    1 MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWSEKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAAAAS 95
            MTKGTSSFGKRHTK+HT CRRCG  +FHKQKK C+ CG+P AKIR FNWSEK KRRKTTGTGRMAHLK + RRFKNGFREGT   AKKV AA++
Sbjct:    1 MTKGTSSFGKRHTKSHTLCRRCGNRSFHKQKKTCAQCGYPAAKIRSFNWSEKGKRRKTTGTGRMAHLKDVQRRFKNGFREGT--QAKKVVAASA 92
[Close]
BLAST of NO18G00490 vs. NCBI_GenBank
Match: XP_023468190.1 (hypothetical protein RHIMIDRAFT_275213 [Rhizopus microsporus ATCC 52813] >CEG77677.1 Putative 60S ribosomal protein L37 [Rhizopus microsporus] >ORE09405.1 60S ribosomal protein L37 [Rhizopus microsporus var. microsporus] >PHZ14482.1 hypothetical protein RHIMIDRAFT_275213 [Rhizopus microsporus ATCC 52813])

HSP 1 Score: 147.1 bits (370), Expect = 2.700e-32
Identity = 71/92 (77.17%), Postives = 77/92 (83.70%), Query Frame = 0 
Query:    1 MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWSEKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAAA 93
            MTKGTSSFGKRHTKTHT CRRCG   FHKQKK C+ CG+P AKIR FNWSEK KRRKTTGTGRMAHLK + RRFKNGFREG+ A  + VA+A
Sbjct:    1 MTKGTSSFGKRHTKTHTLCRRCGNRAFHKQKKTCAQCGYPSAKIRSFNWSEKGKRRKTTGTGRMAHLKDVHRRFKNGFREGSQAKKQTVASA 92
[Close]
BLAST of NO18G00490 vs. NCBI_GenBank
Match: XP_018295192.1 (hypothetical protein PHYBLDRAFT_131879 [Phycomyces blakesleeanus NRRL 1555(-)] >OAD77152.1 hypothetical protein PHYBLDRAFT_131879 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 147.1 bits (370), Expect = 2.700e-32
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 0 
Query:    1 MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWSEKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAAAAS 95
            M+KGTSSFGKRHTK+HT CRRCGR +FH QKK C+ CG+P AKIR FNWSEK +RRKTTGTGRM HLK + RRFKNGFREG+ AP K VAAA++
Sbjct:    1 MSKGTSSFGKRHTKSHTLCRRCGRRSFHNQKKTCAQCGYPAAKIRSFNWSEKGQRRKTTGTGRMRHLKEVHRRFKNGFREGSQAPKKAVAAASA 94
[Close]
BLAST of NO18G00490 vs. NCBI_GenBank
Match: XP_023461956.1 (60S ribosomal protein L37 [Rhizopus microsporus ATCC 52813] >PHZ08248.1 60S ribosomal protein L37 [Rhizopus microsporus ATCC 52813])

HSP 1 Score: 147.1 bits (370), Expect = 2.700e-32
Identity = 71/93 (76.34%), Postives = 76/93 (81.72%), Query Frame = 0 
Query:    1 MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWSEKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAAAA 94
            MTKGTSSFGKRHTKTHT CRRCG   FHKQKK C+ CG+P AKIR FNWSEK KRRKTTGTGRM+HLK + RRFKNGFREGT A  +  AA A
Sbjct:    1 MTKGTSSFGKRHTKTHTLCRRCGNRAFHKQKKTCAQCGYPSAKIRSFNWSEKGKRRKTTGTGRMSHLKEVHRRFKNGFREGTQAKKQTAAATA 93
[Close]
BLAST of NO18G00490 vs. NCBI_GenBank
Match: CEG73985.1 (Putative 60S ribosomal protein L37 [Rhizopus microsporus])

HSP 1 Score: 146.7 bits (369), Expect = 3.600e-32
Identity = 71/90 (78.89%), Postives = 75/90 (83.33%), Query Frame = 0 
Query:    2 TKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWSEKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAA 92
            TKGTSSFGKRHTKTHT CRRCG   FHKQKK C+ CG+P AKIR FNWSEK KRRKTTGTGRMAHLK + RRFKNGFREGT A  + VAA
Sbjct:   15 TKGTSSFGKRHTKTHTLCRRCGNRAFHKQKKTCAQCGYPSAKIRSFNWSEKGKRRKTTGTGRMAHLKEVHRRFKNGFREGTQAKKQTVAA 104
[Close]
BLAST of NO18G00490 vs. NCBI_GenBank
Match: OBZ82135.1 (putative 60S ribosomal protein L37-A, partial [Choanephora cucurbitarum])

HSP 1 Score: 146.7 bits (369), Expect = 3.600e-32
Identity = 73/93 (78.49%), Postives = 79/93 (84.95%), Query Frame = 0 
Query:    2 TKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWSEKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAAAAS 95
            TKGTSSFGKRHTKTHT CRRCG  +FHKQKK C+ CG+P AKIR FNWSEK KRRKTTGTGRMAHLK + RRFKNGFREGT   AKKV AA++
Sbjct:    1 TKGTSSFGKRHTKTHTLCRRCGNRSFHKQKKTCAQCGYPAAKIRSFNWSEKGKRRKTTGTGRMAHLKDVQRRFKNGFREGT--QAKKVVAASA 91
The following BLAST results are available for this feature:
BLAST of NO18G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852553.12.000e-4393.68large subunit ribosomal protein L37e [Nannochlorop... [more]
CEG81571.17.200e-3379.12Putative 60S ribosomal protein L37 [Rhizopus micro... [more]
XP_023465106.17.200e-3379.12hypothetical protein RHIMIDRAFT_257432 [Rhizopus m... [more]
OBZ87739.17.200e-3381.32putative 60S ribosomal protein L37-A [Choanephora ... [more]
OBZ87850.12.100e-3277.66putative 60S ribosomal protein L37-A [Choanephora ... [more]
XP_023468190.12.700e-3277.17hypothetical protein RHIMIDRAFT_275213 [Rhizopus m... [more]
XP_018295192.12.700e-3274.47hypothetical protein PHYBLDRAFT_131879 [Phycomyces... [more]
XP_023461956.12.700e-3276.3460S ribosomal protein L37 [Rhizopus microsporus AT... [more]
CEG73985.13.600e-3278.89Putative 60S ribosomal protein L37 [Rhizopus micro... [more]
OBZ82135.13.600e-3278.49putative 60S ribosomal protein L37-A, partial [Cho... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR041ngnoR041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00490.1NO18G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605628gene_9825Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00490.1NO18G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00490 ID=NO18G00490|Name=NO18G00490|organism=Nannochloropsis oceanica|type=gene|length=2218bp
AGGAGGAGGAGGAGGAGGAGGAAGGAGAGGAGGAAGGGGTGGACGAGGAG
GCAGTGAGTGCCCACAGACCTGCAGTGACGCAGAGAAGGAGAGTGACCGT
GGCGGTAGCGGTACGCGGGAAGAAGGAGGAGGAGAGGGAGGACACAGGGG
AGGAGATGAGGAGAAGGGGGGAGAGGAGGTGACGCGTGCCGGAGGCCTGG
GAGGAGGGACGGCGAGGGCGGGACGAGGCTAACACCGCCACGATAGAAAT
GGATAAATACAAAAAAATGCCTGGGAGGGGAGTGTAGGGACGACGCAGTG
TATAGGTGTCGGAGGATCGATTGTGAGGTCCAATGGGAGAACGCGGAGGG
AGGGGGGGAGGGAGGAGGGAGGAGGGGGAAAGGCATTAATTGCACTCGTC
CCGTTCACAACTCGCTTCCCTTTCGTGGAGCATCCCCCCACAGGCTCCAG
GGAATCTCAAAGAAAGACATGCGTCCTCTGCTGTCTGAATCGTGCAAGTT
CTCGCGCCAAGCGTGGTAATGAATAAGAAGTTCAGGCTGAGTGGGACAGT
CTGCGCGGGCGACTCCCTCGTCAATGCCGGCCGCCATGGCAACGGCACGG
TCAGCGAGGAGGAGGAGCGGATGGCTGTGTAGTGGAAGGCCAGAAAGCAT
CAAGTCCCGGCACCAAGGCCTTGGATGGGGTGTCTCCATCTATATTCTCA
GCTTTGTTTGAACTAGGGGTAAAAGCTGTGGGATGGCTGCTGGTAAATGT
GCCTGAGACGTGGCTGTGGGGACGGCGCACGGCTGCCTCTCCTCCACCAC
CACGAAGAAGAAAGCATTCGCAACATGGTCTCATGCACAGTCGTTCTCAC
GCTTCACACACTCCGCCTCCACTCAAAACCAACCACACGCTACACAGGGG
GGTCGTCGTTGTCCACAGGCAGCAGCTCCAGCCACTAGTCAGTCATGgta
cgtccttctatccctccctcactcctccctccctccctcatctatgtttc
gcccagcaccttcatcaaccccctacgccccgaagaccatgaacaatgtc
cacgcacgacgatctatctctttgccgtgtgttgtctggatggctgcata
ccgcgtgtgccatgaaaagatgtccttgtaattccaccacacccgcatgc
ggctccgttgtgcccctgtgggtgttgcccaacaccccatttctctccta
ttttggacgccaccctcccctcccctcctccaactattctaatcttcccg
ccctccttccctatccattctcctcctcctcactacagACGAAGGGTACT
TCGTCATTCGGGAAGCGCCACACTAAGACTCACACTGGCTGCCGCCGCTG
TGGTCGTATCACCTTCCACAAGCAAAAGAAGGCCTGTAGCTCCTGCGGTT
TCCCCGAGGCCAAGATCCGCAAGTgtacgtgaattgatggggagggagag
aggaaaggagagagtggagggtggttcagcaggtgttcctggctgcagac
agcgagggagggttgaggtcgtcaccgaggcccagggccttaagctatct
atgactacctgtcttgtctttatctgtctgttacagtgttatttatgaat
gtctgtctttgtccctctgtaataaattcatttatgacgatctgtctaga
tgtttaatgcacgtccgggggagcaacaggagagagggtgtggttgtcgt
tgctgcctctcttgtcaatttggggcaggaaagacggaaatggaaggagg
gagggaaggaaggagggaaggggggaggttagcgctgttaaagataggcg
ggtcaagaaagttgcagagaaggatgaattaatcggctgctggttaaagt
agagagacatagaggcccttgggcatgaaggagtgacacgcgcatatctc
accctccctccctccctccctccctccctccctcagTCAACTGGTCGGAG
AAGGCCAAGCGCAGGAAGACTACCGGAACCGGCCGAATGGCACACCTCAA
Ggtacgccctccctccctcccttcctccctccctccttctggctcggccc
cccccctcccatggaaactaatccactcaccctcctcctttctctcctac
cctcccttcttcagGCCCTCCCTCGGAGGTTTAAGAATGGTTTCCGCGAG
GGCACGGCCGCCCCTGCCAAGAAGGTGGCTGCTGCTGCCTCTACTTAAGC
AGTGGAATCTCTCCGCCC
back to top

protein sequence of NO18G00490.1

>NO18G00490.1-protein ID=NO18G00490.1-protein|Name=NO18G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWS
EKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAAAAST*
back to top
Synonyms
Publications