NO18G00490.1, NO18G00490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00490.1
Unique NameNO18G00490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1252
Alignment locationchr18:204114..206331 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:204114..206331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00490.1 vs.
Match: XP_005852553.1 (large subunit ribosomal protein L37e [Nannochloropsis gaditana CCMP526]; EKU23279.1 large subunit ribosomal protein L37e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 184.1 bits (466), Expect = 2.000e-43
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0 
Query:    1 MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWSEKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAAAAST 96
            MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKAC SCGFPEAKIRKFNWSEKAKRRKTTGTGR AHLK+LPRRFKNGFREGT+APAKKVAAA S+
Sbjct:    1 MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACGSCGFPEAKIRKFNWSEKAKRRKTTGTGRTAHLKSLPRRFKNGFREGTSAPAKKVAAATSS 95
The following BLAST results are available for this feature:
BLAST of NO18G00490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852553.12.000e-4393.68large subunit ribosomal protein L37e [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00490NO18G00490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00490.1NO18G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00490.1.cds1NO18G00490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00490.1.cds2NO18G00490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00490.1.cds3NO18G00490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00490.1.cds4NO18G00490.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00490.1 ID=NO18G00490.1|Name=NO18G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp
AGGAGGAGGAGGAGGAGGAGGAAGGAGAGGAGGAAGGGGTGGACGAGGAG
GCAGTGAGTGCCCACAGACCTGCAGTGACGCAGAGAAGGAGAGTGACCGT
GGCGGTAGCGGTACGCGGGAAGAAGGAGGAGGAGAGGGAGGACACAGGGG
AGGAGATGAGGAGAAGGGGGGAGAGGAGGTGACGCGTGCCGGAGGCCTGG
GAGGAGGGACGGCGAGGGCGGGACGAGGCTAACACCGCCACGATAGAAAT
GGATAAATACAAAAAAATGCCTGGGAGGGGAGTGTAGGGACGACGCAGTG
TATAGGTGTCGGAGGATCGATTGTGAGGTCCAATGGGAGAACGCGGAGGG
AGGGGGGGAGGGAGGAGGGAGGAGGGGGAAAGGCATTAATTGCACTCGTC
CCGTTCACAACTCGCTTCCCTTTCGTGGAGCATCCCCCCACAGGCTCCAG
GGAATCTCAAAGAAAGACATGCGTCCTCTGCTGTCTGAATCGTGCAAGTT
CTCGCGCCAAGCGTGGTAATGAATAAGAAGTTCAGGCTGAGTGGGACAGT
CTGCGCGGGCGACTCCCTCGTCAATGCCGGCCGCCATGGCAACGGCACGG
TCAGCGAGGAGGAGGAGCGGATGGCTGTGTAGTGGAAGGCCAGAAAGCAT
CAAGTCCCGGCACCAAGGCCTTGGATGGGGTGTCTCCATCTATATTCTCA
GCTTTGTTTGAACTAGGGGTAAAAGCTGTGGGATGGCTGCTGGTAAATGT
GCCTGAGACGTGGCTGTGGGGACGGCGCACGGCTGCCTCTCCTCCACCAC
CACGAAGAAGAAAGCATTCGCAACATGGTCTCATGCACAGTCGTTCTCAC
GCTTCACACACTCCGCCTCCACTCAAAACCAACCACACGCTACACAGGGG
GGTCGTCGTTGTCCACAGGCAGCAGCTCCAGCCACTAGTCAGTCATGACG
AAGGGTACTTCGTCATTCGGGAAGCGCCACACTAAGACTCACACTGGCTG
CCGCCGCTGTGGTCGTATCACCTTCCACAAGCAAAAGAAGGCCTGTAGCT
CCTGCGGTTTCCCCGAGGCCAAGATCCGCAAGTTCAACTGGTCGGAGAAG
GCCAAGCGCAGGAAGACTACCGGAACCGGCCGAATGGCACACCTCAAGGC
CCTCCCTCGGAGGTTTAAGAATGGTTTCCGCGAGGGCACGGCCGCCCCTG
CCAAGAAGGTGGCTGCTGCTGCCTCTACTTAAGCAGTGGAATCTCTCCGC
CC
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protein sequence of NO18G00490.1

>NO18G00490.1-protein ID=NO18G00490.1-protein|Name=NO18G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MTKGTSSFGKRHTKTHTGCRRCGRITFHKQKKACSSCGFPEAKIRKFNWS
EKAKRRKTTGTGRMAHLKALPRRFKNGFREGTAAPAKKVAAAAST*
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mRNA from alignment at chr18:204114..206331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00490.1 ID=NO18G00490.1|Name=NO18G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2218bp|location=Sequence derived from alignment at chr18:204114..206331- (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGGAGGAAGGAGAGGAGGAAGGGGTGGACGAGGAG
GCAGTGAGTGCCCACAGACCTGCAGTGACGCAGAGAAGGAGAGTGACCGT
GGCGGTAGCGGTACGCGGGAAGAAGGAGGAGGAGAGGGAGGACACAGGGG
AGGAGATGAGGAGAAGGGGGGAGAGGAGGTGACGCGTGCCGGAGGCCTGG
GAGGAGGGACGGCGAGGGCGGGACGAGGCTAACACCGCCACGATAGAAAT
GGATAAATACAAAAAAATGCCTGGGAGGGGAGTGTAGGGACGACGCAGTG
TATAGGTGTCGGAGGATCGATTGTGAGGTCCAATGGGAGAACGCGGAGGG
AGGGGGGGAGGGAGGAGGGAGGAGGGGGAAAGGCATTAATTGCACTCGTC
CCGTTCACAACTCGCTTCCCTTTCGTGGAGCATCCCCCCACAGGCTCCAG
GGAATCTCAAAGAAAGACATGCGTCCTCTGCTGTCTGAATCGTGCAAGTT
CTCGCGCCAAGCGTGGTAATGAATAAGAAGTTCAGGCTGAGTGGGACAGT
CTGCGCGGGCGACTCCCTCGTCAATGCCGGCCGCCATGGCAACGGCACGG
TCAGCGAGGAGGAGGAGCGGATGGCTGTGTAGTGGAAGGCCAGAAAGCAT
CAAGTCCCGGCACCAAGGCCTTGGATGGGGTGTCTCCATCTATATTCTCA
GCTTTGTTTGAACTAGGGGTAAAAGCTGTGGGATGGCTGCTGGTAAATGT
GCCTGAGACGTGGCTGTGGGGACGGCGCACGGCTGCCTCTCCTCCACCAC
CACGAAGAAGAAAGCATTCGCAACATGGTCTCATGCACAGTCGTTCTCAC
GCTTCACACACTCCGCCTCCACTCAAAACCAACCACACGCTACACAGGGG
GGTCGTCGTTGTCCACAGGCAGCAGCTCCAGCCACTAGTCAGTCATGGTA
CGTCCTTCTATCCCTCCCTCACTCCTCCCTCCCTCCCTCATCTATGTTTC
GCCCAGCACCTTCATCAACCCCCTACGCCCCGAAGACCATGAACAATGTC
CACGCACGACGATCTATCTCTTTGCCGTGTGTTGTCTGGATGGCTGCATA
CCGCGTGTGCCATGAAAAGATGTCCTTGTAATTCCACCACACCCGCATGC
GGCTCCGTTGTGCCCCTGTGGGTGTTGCCCAACACCCCATTTCTCTCCTA
TTTTGGACGCCACCCTCCCCTCCCCTCCTCCAACTATTCTAATCTTCCCG
CCCTCCTTCCCTATCCATTCTCCTCCTCCTCACTACAGACGAAGGGTACT
TCGTCATTCGGGAAGCGCCACACTAAGACTCACACTGGCTGCCGCCGCTG
TGGTCGTATCACCTTCCACAAGCAAAAGAAGGCCTGTAGCTCCTGCGGTT
TCCCCGAGGCCAAGATCCGCAAGTGTACGTGAATTGATGGGGAGGGAGAG
AGGAAAGGAGAGAGTGGAGGGTGGTTCAGCAGGTGTTCCTGGCTGCAGAC
AGCGAGGGAGGGTTGAGGTCGTCACCGAGGCCCAGGGCCTTAAGCTATCT
ATGACTACCTGTCTTGTCTTTATCTGTCTGTTACAGTGTTATTTATGAAT
GTCTGTCTTTGTCCCTCTGTAATAAATTCATTTATGACGATCTGTCTAGA
TGTTTAATGCACGTCCGGGGGAGCAACAGGAGAGAGGGTGTGGTTGTCGT
TGCTGCCTCTCTTGTCAATTTGGGGCAGGAAAGACGGAAATGGAAGGAGG
GAGGGAAGGAAGGAGGGAAGGGGGGAGGTTAGCGCTGTTAAAGATAGGCG
GGTCAAGAAAGTTGCAGAGAAGGATGAATTAATCGGCTGCTGGTTAAAGT
AGAGAGACATAGAGGCCCTTGGGCATGAAGGAGTGACACGCGCATATCTC
ACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGTCAACTGGTCGGAG
AAGGCCAAGCGCAGGAAGACTACCGGAACCGGCCGAATGGCACACCTCAA
GGTACGCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCTTCTGGCTCGGCCC
CCCCCCTCCCATGGAAACTAATCCACTCACCCTCCTCCTTTCTCTCCTAC
CCTCCCTTCTTCAGGCCCTCCCTCGGAGGTTTAAGAATGGTTTCCGCGAG
GGCACGGCCGCCCCTGCCAAGAAGGTGGCTGCTGCTGCCTCTACTTAAGC
AGTGGAATCTCTCCGCCC
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Coding sequence (CDS) from alignment at chr18:204114..206331-

>NO18G00490.1 ID=NO18G00490.1|Name=NO18G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at chr18:204114..206331- (Nannochloropsis oceanica)
ATGACGAAGGGTACTTCGTCATTCGGGAAGCGCCACACTAAGACTCACAC
TGGCTGCCGCCGCTGTGGTCGTATCACCTTCCACAAGCAAAAGAAGGCCT
GTAGCTCCTGCGGTTTCCCCGAGGCCAAGATCCGCAAGTTCAACTGGTCG
GAGAAGGCCAAGCGCAGGAAGACTACCGGAACCGGCCGAATGGCACACCT
CAAGGCCCTCCCTCGGAGGTTTAAGAATGGTTTCCGCGAGGGCACGGCCG
CCCCTGCCAAGAAGGTGGCTGCTGCTGCCTCTACTTAA
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Synonyms
Publications