NO18G00420, NO18G00420 (gene) Nannochloropsis oceanica

Overview
NameNO18G00420
Unique NameNO18G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3136
Alignment locationchr18:177417..180552 +

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Properties
Property NameValue
DescriptionProtein XRP2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:177417..180552 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030132clathrin coat of coated pit
GO:0030130clathrin coat of trans-Golgi network vesicle
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
GO:0043547positive regulation of GTPase activity
GO:0000902cell morphogenesis
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0005096GTPase activator activity
Vocabulary: INTERPRO
TermDefinition
IPR017901C-CAP_CF_C-like
IPR012945Tubulin-bd_cofactor_C_dom
IPR000996Clathrin_L-chain
Homology
BLAST of NO18G00420 vs. NCBI_GenBank
Match: CCA26427.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 136.7 bits (343), Expect = 1.600e-28
Identity = 68/152 (44.74%), Postives = 98/152 (64.47%), Query Frame = 0
Query:   11 YRASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGEINGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCSNTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQHAEHMEAAGLHP 163
            + ASDGT F + +E+RKYE ET++TFR+   E+L K PG I GQPFD   L DC V+LLDHTD+V+++ V  +K+F+G  ++SV I +CS+  FT+A ++   +    CT  LY  T P +   T  ++ F PFNG+Y Q ++  E A L P
Sbjct:    4 FTASDGTQFKDRNEWRKYEFETNYTFRNKAQETLIKGPGSICGQPFDVSDLKDCVVMLLDHTDQVQVDHVAATKMFLGPSSTSVFIRNCSDCVFTIACKQLRFRDCNNCTVYLYSFTAPII--ETSSDMRFAPFNGIYRQLSKQFEEARLDP 153          
BLAST of NO18G00420 vs. NCBI_GenBank
Match: XP_008607785.1 (hypothetical protein SDRG_03916 [Saprolegnia diclina VS20] >EQC38961.1 hypothetical protein SDRG_03916 [Saprolegnia diclina VS20])

HSP 1 Score: 136.7 bits (343), Expect = 1.600e-28
Identity = 67/153 (43.79%), Postives = 94/153 (61.44%), Query Frame = 0
Query:   11 YRASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGEINGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCSNTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQHAEHMEAAGLHPD 164
            + ASDGT F + DE+RKYE  T+FTF+    E+L KLPG+I GQPFD   L+ C+VLLLDH D+V+I+ + N +VFIG  + SV + +C+N  FT+A ++   +    C   LY  T P +  +T   + F PFNG Y     H  +A L P+
Sbjct:    3 FTASDGTEFEDRDEWRKYEFATNFTFKAKKDETLMKLPGQIAGQPFDIADLEGCQVLLLDHCDQVQIDNLVNCRVFIGPSSESVFVRNCTNCVFTVACKQLRTRDCSQCHLFLYSLTDPIIETST--QMVFAPFNGAYHGLRSHFASANLEPE 153          
BLAST of NO18G00420 vs. NCBI_GenBank
Match: XP_012203546.1 (hypothetical protein SPRG_09036 [Saprolegnia parasitica CBS 223.65] >KDO25737.1 hypothetical protein SPRG_09036 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 136.7 bits (343), Expect = 1.600e-28
Identity = 67/153 (43.79%), Postives = 94/153 (61.44%), Query Frame = 0
Query:   11 YRASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGEINGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCSNTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQHAEHMEAAGLHPD 164
            + A+DGT F + DE+RKYE  T+FTF+    E+L KLPG+I GQPFD   L+ C+VLLLDH D+V+I+ + N +VFIG  + SV + +C+N  FT+A ++   +    C   LY  T P +   T + + F PFNG Y     H  AA L P+
Sbjct:    6 FTATDGTEFEDRDEWRKYEFATNFTFKGKKDETLMKLPGQIAGQPFDMADLEGCQVLLLDHCDQVQIDNLVNCRVFIGPSSESVFVRNCTNCVFTVACKQLRTRDCSQCHLFLYALTDPII--ETSNQMVFAPFNGAYHGLRSHFAAANLEPE 156          
BLAST of NO18G00420 vs. NCBI_GenBank
Match: CBJ27986.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 136.3 bits (342), Expect = 2.100e-28
Identity = 66/149 (44.30%), Postives = 93/149 (62.42%), Query Frame = 0
Query:   12 RASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGEINGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCSNTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQHAEHMEAAGL 161
            RA DGT FT+  EYRKY   T +TF+D  GE L KLPG+I+GQPFD  +L  CEV LLD ++ V+++++++ +VFI AC  SV + +C+   FT+A ++   +          C T P +   T H ++F PFNG Y  HAEH+  AGL
Sbjct:    2 RAPDGTEFTDRAEYRKYLFLTQYTFKDREGEILRKLPGDIDGQPFDLTSLRRCEVALLDRSEAVQVDELSDCRVFIAACVDSVFVRNCTGCVFTVACKQLRTRXXXXXXXXXXCKTEPII--ETSHGMTFAPFNGAYVGHAEHLREAGL 148          
BLAST of NO18G00420 vs. NCBI_GenBank
Match: CCI48443.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 134.8 bits (338), Expect = 6.200e-28
Identity = 69/152 (45.39%), Postives = 96/152 (63.16%), Query Frame = 0
Query:   11 YRASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGEINGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCSNTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQHAEHMEAAGLHP 163
            + ASDGT F + +E+RKYE ET++TFR+   E+L KLPG I GQPFD   L +C V+LLDHTD+V+++ V  +KVF+G  +SSV I +CS+  FT+A ++   +    CT  LY  T P +   T   + F PFNG+Y Q +     A L P
Sbjct:    4 FTASDGTQFEDRNEWRKYEFETNYTFRNQAQETLIKLPGSICGQPFDVSDLKNCVVMLLDHTDQVQVDHVVATKVFLGPSSSSVFIRNCSDCVFTIACKQLRFRDCINCTVYLYSFTAPII--ETSSEMRFAPFNGMYRQLSTQFHEARLDP 153          
BLAST of NO18G00420 vs. NCBI_GenBank
Match: XP_009037891.1 (hypothetical protein AURANDRAFT_64932 [Aureococcus anophagefferens] >EGB07258.1 hypothetical protein AURANDRAFT_64932 [Aureococcus anophagefferens])

HSP 1 Score: 127.1 bits (318), Expect = 1.300e-25
Identity = 62/153 (40.52%), Postives = 92/153 (60.13%), Query Frame = 0
Query:   10 EYRASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGEINGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCSNTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQHAEHMEAAGLHP 163
            ++ ASDGTVF    + +KYE +  +TF D  GE L K PG I+GQPFD    + CE+++ D  D+V+I+ + + KVF+GA + +V + +CS++ F LA ++   +    CTF LY  T P +  +T   + F PF G Y + A HM AA L P
Sbjct:    8 QFVASDGTVFDKKYKVKKYEFKLKYTFTDKKGEKLAKPPGAIDGQPFDMADCEGCELVVADRCDQVQIDVLKSCKVFVGASSEAVFVRNCSDSVFYLACKQLRTRDCVNCTFYLYAQTEPIIETST--GMKFAPFRGGYAEQAAHMAAANLDP 158          
BLAST of NO18G00420 vs. NCBI_GenBank
Match: OQS02296.1 (hypothetical protein THRCLA_05318 [Thraustotheca clavata])

HSP 1 Score: 124.4 bits (311), Expect = 8.300e-25
Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 0
Query:   11 YRASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGEINGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCSNTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQHAEHMEAAGLHPD 164
            + ASDGT F + D +R+YE ET++TF+    E+L KLPG+I GQPFD   LD+C+VLLLDH D+V+++ + N +VFIG  ++           FT+A ++   +    C   LY  T P +   T + + F PFNG Y    +H   AGL P+
Sbjct:    3 FTASDGTEFEDRDAWRQYEFETNYTFKGKKEETLMKLPGQIQGQPFDLADLDNCQVLLLDHCDQVQVDNLVNXRVFIGPSSNXXXXXXXXXXVFTVACKQLRTRDCSQCHIFLYSLTDPII--ETSNQMIFAPFNGAYHGLRQHFTNAGLEPE 153          
BLAST of NO18G00420 vs. NCBI_GenBank
Match: XP_002904856.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY53238.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 122.9 bits (307), Expect = 2.400e-24
Identity = 61/152 (40.13%), Postives = 90/152 (59.21%), Query Frame = 0
Query:   11 YRASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGEINGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCSNTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQHAEHMEAAGLHP 163
            + ASDG  F +   +R YE E ++TFR+   E+L KLPG+I GQPFD   L+ C V+LLDH ++V+I+ + N +VF+G  + SV + +CSN  FT+A ++   +   GC+  LY  T P +   T   ++F PFNG Y     +   A L P
Sbjct:    3 FTASDGKQFEDRAAWRLYEFELTYTFRNKKDETLMKLPGQIEGQPFDVSDLEGCTVMLLDHINQVQIDNLANCRVFVGPSSESVFVRNCSNCVFTIACKQLRTRDCSGCSIYLYSLTDPII--ETSQQMTFAPFNGAYCGIERNFTDARLEP 152          
BLAST of NO18G00420 vs. NCBI_GenBank
Match: XP_002899146.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY62510.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 122.9 bits (307), Expect = 2.400e-24
Identity = 61/152 (40.13%), Postives = 90/152 (59.21%), Query Frame = 0
Query:   11 YRASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGEINGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCSNTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQHAEHMEAAGLHP 163
            + ASDG  F +   +R YE E ++TFR+   E+L KLPG+I GQPFD   L+ C V+LLDH ++V+I+ + N +VF+G  + SV + +CSN  FT+A ++   +   GC+  LY  T P +   T   ++F PFNG Y     +   A L P
Sbjct:    3 FTASDGKQFEDRAAWRLYEFELTYTFRNKKDETLMKLPGQIEGQPFDVSDLEGCTVMLLDHINQVQIDNLANCRVFVGPSSESVFVRNCSNCVFTIACKQLRTRDCSGCSIYLYSLTDPII--ETSQQMTFAPFNGAYCGIERNFTDARLEP 152          
BLAST of NO18G00420 vs. NCBI_GenBank
Match: XP_024575261.1 (dolichyl-phosphate beta [Plasmopara halstedii] >CEG38892.1 dolichyl-phosphate beta [Plasmopara halstedii])

HSP 1 Score: 121.3 bits (303), Expect = 7.100e-24
Identity = 59/152 (38.82%), Postives = 92/152 (60.53%), Query Frame = 0
Query:   11 YRASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGEINGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCSNTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQHAEHMEAAGLHP 163
            + ASDG  F +   +R YE E ++TFR+ V E+L KLPG+I+GQ FD   L+ C+V+LLDH ++V+I+ ++N +VF+G  + SV + +C+N  FT+A ++   +    C+  LY  T P +   T   ++F PFNG Y     +   A L P
Sbjct:   92 FTASDGKKFEDRAAWRLYEFELTYTFRNKVNETLMKLPGQIDGQAFDVSDLEGCQVMLLDHINQVQIDHLSNCRVFVGPSSESVFVRNCTNCVFTIACKQLRTRDCSDCSIYLYSLTDPII--ETSQEMTFAPFNGAYCGIERNFADARLEP 241          
The following BLAST results are available for this feature:
BLAST of NO18G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CCA26427.11.600e-2844.74conserved hypothetical protein [Albugo laibachii N... [more]
XP_008607785.11.600e-2843.79hypothetical protein SDRG_03916 [Saprolegnia dicli... [more]
XP_012203546.11.600e-2843.79hypothetical protein SPRG_09036 [Saprolegnia paras... [more]
CBJ27986.12.100e-2844.30conserved unknown protein [Ectocarpus siliculosus][more]
CCI48443.16.200e-2845.39unnamed protein product [Albugo candida][more]
XP_009037891.11.300e-2540.52hypothetical protein AURANDRAFT_64932 [Aureococcus... [more]
OQS02296.18.300e-2540.52hypothetical protein THRCLA_05318 [Thraustotheca c... [more]
XP_002904856.12.400e-2440.13conserved hypothetical protein [Phytophthora infes... [more]
XP_002899146.12.400e-2440.13conserved hypothetical protein [Phytophthora infes... [more]
XP_024575261.17.100e-2438.82dolichyl-phosphate beta [Plasmopara halstedii] >CE... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR050ncniR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00420.1NO18G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00420.1NO18G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00420 ID=NO18G00420|Name=NO18G00420|organism=Nannochloropsis oceanica|type=gene|length=3136bp
ATGGAGGCTGCCGCGATGAATAGCAAGGAGTATCGGGCTTCGGATGGCAC
AGTCTTTACCAACCTCGACGAATATCGCAAGgtgagggaggaggaggaga
atgtgggagggatggagaaagggagagggggaggcagggagatgagctcg
gtgcgctgtcggcattatcgggaacgggagggaggtatagagggagggac
ggagggaggggatgtgaaaaacacgaaaaaacaatcgctcatatcttgta
gaattgagagagcgagcatagtcgcgcctcggtgataaggcattaggaga
cacagcatctaacccccccctctccctccctacttggtcctccctccctc
cctcgccctcctccttcccctccacagTACGAAATGGAGACCTCCTTCAC
CTTCCGTGACTCGGTTGGGGAAAGTCTGACCAAGCTACCCGGAGAAATCA
ACGGCCAGCCCTTCGATTGCCTCGgtacgacgcgccctccctccctccct
ccctccctcacttcctccctcccttcccccatcctctgccacctctcttt
gcattgtaccaatcacttccacaaccctcctttcctccctctctcattct
tttctccctcctttacacaagacactgacttcaccactcccgtacccccc
ctccctccctccctccctccctccctccctccctccttgcctcccttccc
ccattacccccctagCCCTGGACGACTGCGAGGTCCTGCTCCTCGATCAC
ACGGATCGCGTCAAGATTAATCAGGTTAACAACTCCAAgtacgtcctccc
tccctccctcactccttccctccctccctgctcgtcgatcccactctttc
ctcctcggccactactcccatccgaaccattcctccctccctcacccccc
tcccttccatccctccctccctccctccctccctccctccctccctccct
ccctcccttcctcctgccttcattccctccagGGTCTTCATCGGTGCCTG
CGCCTCTTCCGTCATCATCTCCCACTGCTCCAACACCACCTTCACTCTCG
CCACCCGAGAGTTCTACGCCCAGCACACCCAGgcgcgttccgcccctccc
tccctccccccctccccccctcctttaatgttcaactttgctcaactttt
acatctcctccctccctcgtaatcatctccccctccctccctccctccct
ccctagGGATGCACCTTCCTTCTCTACTGTGCTACCCCTCCCGAGGTGGC
CGCTGCCACCTGTCACAATCTCTCCTTCGGCCCCTTCAACGgtacctgcc
ctccctccctccctccctccctcctcttgctattggcttccttgaagccc
ctgccatatgtgctctaaccccctttttcccttcctccctcccttcctcc
ctccctgcccagGCGTCTACGAGCAACACGCTGAGCACATGGAGGCGGCC
GGACTTCATCCTGACGgtacctccctccctccctccctccctccctccct
ccctccctccctccctccctccctccctccctccctccctccctccctcc
ctccctctcttcctccctccccccctcctggctccgccaccatgccctcc
agaactcaccctaccctccctttttccctccctccctccgtcagACAATC
AATGGTGGTGTGTCGAGCCTATTTTGAGCAGCAGCCGCGAAGGAGGGGAG
GAGGAGGAGGAGGAGGGGATGGTGGTTCCAGAGgtagggatgaagagaag
gaagaagaggagggagggagggagggagggagggagggagggctggtccg
aggaactgtcccacgcatcttctttctcactcaccctctttccctctttc
cctccctccctccctccctccctccctcccctgtagGACTGCTACACCCT
CCTCACCCCCTCCACCTCCTCGCCCTCCCTCGTGCCTTGGGCTCCTCTCG
GCGAGTGCGAGGTCTCCATTCCTCTCACTTGGCCTCCTCCCCCGgtaagt
gccctccctccctccctccctccctccctccctccctcctccgcttgacg
ctcctccctcctccctcctccctcctccctcctccctcctccctccctcc
ctccctccctcctagcaggaagagcaaaacgaggacgaggaggaatacac
cccccctccctcccccctccctcgcccccttcctcctccttgaagCCAAA
CCTCAACAGCGACACGCCCCCACCGGTCGCTCCATTCCCTCAGCAGTCTC
CAGGGAAGGAGAAAGGGGAAGAGGAAGAGGAGGAGGGCCCGTGGGAGGTA
GAGTGGAGGGAGAGGAGACGTCGGAAGGCGGAGGAGGAGCTACGGGTGgt
gagtgtcggaggaaggaaggagggaagggaggaaaggagggagggaggga
gggagggagggatgacatgcattttacttgttgaatcattgaatcattca
tgtaacctcccacctccctctccctctctctctctctctctctccccttc
cctccttccctcagATCAAAGCTGCCAAAGAGCGGGCGGCTCAAGAGCTC
GACGTCTTCTACAACGCACGGACAGATCGATTCGCCTTGAGgtgagggag
ggagggagggagggagggagggagggaggggggaggagagggaaggaagg
aggagggttgtctcttttccgtgaggtctgtttgatcccttgtgattggc
ttctcacccctccctccttccctccctctctccctccctccctccctccc
tccctccttccctccctccttccctccctccctcccaccacagACAAGAA
AAAAACCGCGAGAAGGAGGCGGCCTTCCTGGCTCTTCTACAGGAGGACGA
AGAAGCCACCCACGACGGTCGGCCCATGCAGCGGGTGTGGGGTCTGGTGG
GAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGTGGATCTGGACAGGTTC
CGGGGGCTGCTGGAGGAGTTGAAGGAGGAGGGACTGCCCTCTTCCTCCTC
CTCGTCCTCCTCGTCATTTTCTAGGTTGAGAGGGAAAGGAGGAGGAGAGG
ATGGAGAGGAGGAGGAGGAGGAAGAGCGAAGGGAGGAAAGGAGGAGAAGA
GGGAGTGGGAAAGGGGAGAACCATTTATTACCTTGA
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protein sequence of NO18G00420.1

>NO18G00420.1-protein ID=NO18G00420.1-protein|Name=NO18G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MEAAAMNSKEYRASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGE
INGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCS
NTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQ
HAEHMEAAGLHPDDNQWWCVEPILSSSREGGEEEEEEGMVVPEDCYTLLT
PSTSSPSLVPWAPLGECEVSIPLTWPPPPPNLNSDTPPPVAPFPQQSPGK
EKGEEEEEEGPWEVEWRERRRRKAEEELRVIKAAKERAAQELDVFYNART
DRFALRQEKNREKEAAFLALLQEDEEATHDGRPMQRVWGLVGGREGGREE
GRVDLDRFRGLLEELKEEGLPSSSSSSSSSFSRLRGKGGGEDGEEEEEEE
RREERRRRGSGKGENHLLP*
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Synonyms
Publications