NO18G00420.1, NO18G00420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00420.1
Unique NameNO18G00420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1260
Alignment locationchr18:177417..180552 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:177417..180552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00420.1 vs.
Match: CBJ27986.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 150.6 bits (379), Expect = 1.100e-32
Identity = 94/251 (37.45%), Postives = 129/251 (51.39%), Query Frame = 0 
Query:   12 RASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGEINGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCSNTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQHAEHMEAAGLHPDDNQWWCVEPILSSSREGGE----EEEEEGMVVPEDCYTLLTPSTSSPSLVPWAPLGE-CEVSIPLTWPPPPPNLNSDTPPPVAPFPQQSPGKEKGEEEE 258
            RA DGT FT+  EYRKY   T +TF+D  GE L KLPG+I+GQPFD  +L  CEV LLD ++ V+++++++ +VFI AC  SV + +C+   FT+A ++   +  + C F LYC T P +   T H ++F PFNG Y  HAEH+  AGL    N W+ V      ++ G       EEE+G                     PW PL +  EV+IP             T P   P P +  G   GE  E
Sbjct:    2 RAPDGTEFTDRAEYRKYLFLTQYTFKDREGEILRKLPGDIDGQPFDLTSLRRCEVALLDRSEAVQVDELSDCRVFIAACVDSVFVRNCTGCVFTVACKQLRTRDCEDCEFRLYCKTEPII--ETSHGMTFAPFNGAYVGHAEHLREAGL-MTPNLWFGVYDFNDEAKTGDNWRLLAEEEQGG-------------------EPWRPLNDNSEVAIPA------------TAPGSVPLPSKRTGGRTGETSE 218
The following BLAST results are available for this feature:
BLAST of NO18G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ27986.11.100e-3237.45conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00420NO18G00420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00420.1NO18G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00420.1.cds1NO18G00420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00420.1.cds2NO18G00420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00420.1.cds3NO18G00420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00420.1.cds4NO18G00420.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00420.1.cds5NO18G00420.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00420.1.cds6NO18G00420.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00420.1.cds7NO18G00420.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00420.1.cds8NO18G00420.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00420.1.cds9NO18G00420.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00420.1.cds10NO18G00420.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00420.1.cds11NO18G00420.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00420.1 ID=NO18G00420.1|Name=NO18G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1260bp
ATGGAGGCTGCCGCGATGAATAGCAAGGAGTATCGGGCTTCGGATGGCAC
AGTCTTTACCAACCTCGACGAATATCGCAAGTACGAAATGGAGACCTCCT
TCACCTTCCGTGACTCGGTTGGGGAAAGTCTGACCAAGCTACCCGGAGAA
ATCAACGGCCAGCCCTTCGATTGCCTCGCCCTGGACGACTGCGAGGTCCT
GCTCCTCGATCACACGGATCGCGTCAAGATTAATCAGGTTAACAACTCCA
AGGTCTTCATCGGTGCCTGCGCCTCTTCCGTCATCATCTCCCACTGCTCC
AACACCACCTTCACTCTCGCCACCCGAGAGTTCTACGCCCAGCACACCCA
GGGATGCACCTTCCTTCTCTACTGTGCTACCCCTCCCGAGGTGGCCGCTG
CCACCTGTCACAATCTCTCCTTCGGCCCCTTCAACGGCGTCTACGAGCAA
CACGCTGAGCACATGGAGGCGGCCGGACTTCATCCTGACGACAATCAATG
GTGGTGTGTCGAGCCTATTTTGAGCAGCAGCCGCGAAGGAGGGGAGGAGG
AGGAGGAGGAGGGGATGGTGGTTCCAGAGGACTGCTACACCCTCCTCACC
CCCTCCACCTCCTCGCCCTCCCTCGTGCCTTGGGCTCCTCTCGGCGAGTG
CGAGGTCTCCATTCCTCTCACTTGGCCTCCTCCCCCGCCAAACCTCAACA
GCGACACGCCCCCACCGGTCGCTCCATTCCCTCAGCAGTCTCCAGGGAAG
GAGAAAGGGGAAGAGGAAGAGGAGGAGGGCCCGTGGGAGGTAGAGTGGAG
GGAGAGGAGACGTCGGAAGGCGGAGGAGGAGCTACGGGTGATCAAAGCTG
CCAAAGAGCGGGCGGCTCAAGAGCTCGACGTCTTCTACAACGCACGGACA
GATCGATTCGCCTTGAGACAAGAAAAAAACCGCGAGAAGGAGGCGGCCTT
CCTGGCTCTTCTACAGGAGGACGAAGAAGCCACCCACGACGGTCGGCCCA
TGCAGCGGGTGTGGGGTCTGGTGGGAGGGAGGGAGGGAGGGAGGGAGGAA
GGGAGGGTGGATCTGGACAGGTTCCGGGGGCTGCTGGAGGAGTTGAAGGA
GGAGGGACTGCCCTCTTCCTCCTCCTCGTCCTCCTCGTCATTTTCTAGGT
TGAGAGGGAAAGGAGGAGGAGAGGATGGAGAGGAGGAGGAGGAGGAAGAG
CGAAGGGAGGAAAGGAGGAGAAGAGGGAGTGGGAAAGGGGAGAACCATTT
ATTACCTTGA
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protein sequence of NO18G00420.1

>NO18G00420.1-protein ID=NO18G00420.1-protein|Name=NO18G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MEAAAMNSKEYRASDGTVFTNLDEYRKYEMETSFTFRDSVGESLTKLPGE
INGQPFDCLALDDCEVLLLDHTDRVKINQVNNSKVFIGACASSVIISHCS
NTTFTLATREFYAQHTQGCTFLLYCATPPEVAAATCHNLSFGPFNGVYEQ
HAEHMEAAGLHPDDNQWWCVEPILSSSREGGEEEEEEGMVVPEDCYTLLT
PSTSSPSLVPWAPLGECEVSIPLTWPPPPPNLNSDTPPPVAPFPQQSPGK
EKGEEEEEEGPWEVEWRERRRRKAEEELRVIKAAKERAAQELDVFYNART
DRFALRQEKNREKEAAFLALLQEDEEATHDGRPMQRVWGLVGGREGGREE
GRVDLDRFRGLLEELKEEGLPSSSSSSSSSFSRLRGKGGGEDGEEEEEEE
RREERRRRGSGKGENHLLP*
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mRNA from alignment at chr18:177417..180552+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00420.1 ID=NO18G00420.1|Name=NO18G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=3136bp|location=Sequence derived from alignment at chr18:177417..180552+ (Nannochloropsis oceanica)
ATGGAGGCTGCCGCGATGAATAGCAAGGAGTATCGGGCTTCGGATGGCAC
AGTCTTTACCAACCTCGACGAATATCGCAAGGTGAGGGAGGAGGAGGAGA
ATGTGGGAGGGATGGAGAAAGGGAGAGGGGGAGGCAGGGAGATGAGCTCG
GTGCGCTGTCGGCATTATCGGGAACGGGAGGGAGGTATAGAGGGAGGGAC
GGAGGGAGGGGATGTGAAAAACACGAAAAAACAATCGCTCATATCTTGTA
GAATTGAGAGAGCGAGCATAGTCGCGCCTCGGTGATAAGGCATTAGGAGA
CACAGCATCTAACCCCCCCCTCTCCCTCCCTACTTGGTCCTCCCTCCCTC
CCTCGCCCTCCTCCTTCCCCTCCACAGTACGAAATGGAGACCTCCTTCAC
CTTCCGTGACTCGGTTGGGGAAAGTCTGACCAAGCTACCCGGAGAAATCA
ACGGCCAGCCCTTCGATTGCCTCGGTACGACGCGCCCTCCCTCCCTCCCT
CCCTCCCTCACTTCCTCCCTCCCTTCCCCCATCCTCTGCCACCTCTCTTT
GCATTGTACCAATCACTTCCACAACCCTCCTTTCCTCCCTCTCTCATTCT
TTTCTCCCTCCTTTACACAAGACACTGACTTCACCACTCCCGTACCCCCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTGCCTCCCTTCCC
CCATTACCCCCCTAGCCCTGGACGACTGCGAGGTCCTGCTCCTCGATCAC
ACGGATCGCGTCAAGATTAATCAGGTTAACAACTCCAAGTACGTCCTCCC
TCCCTCCCTCACTCCTTCCCTCCCTCCCTGCTCGTCGATCCCACTCTTTC
CTCCTCGGCCACTACTCCCATCCGAACCATTCCTCCCTCCCTCACCCCCC
TCCCTTCCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTTCCTCCTGCCTTCATTCCCTCCAGGGTCTTCATCGGTGCCTG
CGCCTCTTCCGTCATCATCTCCCACTGCTCCAACACCACCTTCACTCTCG
CCACCCGAGAGTTCTACGCCCAGCACACCCAGGCGCGTTCCGCCCCTCCC
TCCCTCCCCCCCTCCCCCCCTCCTTTAATGTTCAACTTTGCTCAACTTTT
ACATCTCCTCCCTCCCTCGTAATCATCTCCCCCTCCCTCCCTCCCTCCCT
CCCTAGGGATGCACCTTCCTTCTCTACTGTGCTACCCCTCCCGAGGTGGC
CGCTGCCACCTGTCACAATCTCTCCTTCGGCCCCTTCAACGGTACCTGCC
CTCCCTCCCTCCCTCCCTCCCTCCTCTTGCTATTGGCTTCCTTGAAGCCC
CTGCCATATGTGCTCTAACCCCCTTTTTCCCTTCCTCCCTCCCTTCCTCC
CTCCCTGCCCAGGCGTCTACGAGCAACACGCTGAGCACATGGAGGCGGCC
GGACTTCATCCTGACGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCTCTTCCTCCCTCCCCCCCTCCTGGCTCCGCCACCATGCCCTCC
AGAACTCACCCTACCCTCCCTTTTTCCCTCCCTCCCTCCGTCAGACAATC
AATGGTGGTGTGTCGAGCCTATTTTGAGCAGCAGCCGCGAAGGAGGGGAG
GAGGAGGAGGAGGAGGGGATGGTGGTTCCAGAGGTAGGGATGAAGAGAAG
GAAGAAGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTGGTCCG
AGGAACTGTCCCACGCATCTTCTTTCTCACTCACCCTCTTTCCCTCTTTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTGTAGGACTGCTACACCCT
CCTCACCCCCTCCACCTCCTCGCCCTCCCTCGTGCCTTGGGCTCCTCTCG
GCGAGTGCGAGGTCTCCATTCCTCTCACTTGGCCTCCTCCCCCGGTAAGT
GCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCGCTTGACG
CTCCTCCCTCCTCCCTCCTCCCTCCTCCCTCCTCCCTCCTCCCTCCCTCC
CTCCCTCCCTCCTAGCAGGAAGAGCAAAACGAGGACGAGGAGGAATACAC
CCCCCCTCCCTCCCCCCTCCCTCGCCCCCTTCCTCCTCCTTGAAGCCAAA
CCTCAACAGCGACACGCCCCCACCGGTCGCTCCATTCCCTCAGCAGTCTC
CAGGGAAGGAGAAAGGGGAAGAGGAAGAGGAGGAGGGCCCGTGGGAGGTA
GAGTGGAGGGAGAGGAGACGTCGGAAGGCGGAGGAGGAGCTACGGGTGGT
GAGTGTCGGAGGAAGGAAGGAGGGAAGGGAGGAAAGGAGGGAGGGAGGGA
GGGAGGGAGGGATGACATGCATTTTACTTGTTGAATCATTGAATCATTCA
TGTAACCTCCCACCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCCCCTTC
CCTCCTTCCCTCAGATCAAAGCTGCCAAAGAGCGGGCGGCTCAAGAGCTC
GACGTCTTCTACAACGCACGGACAGATCGATTCGCCTTGAGGTGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGAGGAGAGGGAAGGAAGG
AGGAGGGTTGTCTCTTTTCCGTGAGGTCTGTTTGATCCCTTGTGATTGGC
TTCTCACCCCTCCCTCCTTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCC
TCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCACCACAGACAAGAA
AAAAACCGCGAGAAGGAGGCGGCCTTCCTGGCTCTTCTACAGGAGGACGA
AGAAGCCACCCACGACGGTCGGCCCATGCAGCGGGTGTGGGGTCTGGTGG
GAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGTGGATCTGGACAGGTTC
CGGGGGCTGCTGGAGGAGTTGAAGGAGGAGGGACTGCCCTCTTCCTCCTC
CTCGTCCTCCTCGTCATTTTCTAGGTTGAGAGGGAAAGGAGGAGGAGAGG
ATGGAGAGGAGGAGGAGGAGGAAGAGCGAAGGGAGGAAAGGAGGAGAAGA
GGGAGTGGGAAAGGGGAGAACCATTTATTACCTTGA
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Coding sequence (CDS) from alignment at chr18:177417..180552+

>NO18G00420.1 ID=NO18G00420.1|Name=NO18G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at chr18:177417..180552+ (Nannochloropsis oceanica)
ATGGAGGCTGCCGCGATGAATAGCAAGGAGTATCGGGCTTCGGATGGCAC
AGTCTTTACCAACCTCGACGAATATCGCAAGTACGAAATGGAGACCTCCT
TCACCTTCCGTGACTCGGTTGGGGAAAGTCTGACCAAGCTACCCGGAGAA
ATCAACGGCCAGCCCTTCGATTGCCTCGCCCTGGACGACTGCGAGGTCCT
GCTCCTCGATCACACGGATCGCGTCAAGATTAATCAGGTTAACAACTCCA
AGGTCTTCATCGGTGCCTGCGCCTCTTCCGTCATCATCTCCCACTGCTCC
AACACCACCTTCACTCTCGCCACCCGAGAGTTCTACGCCCAGCACACCCA
GGGATGCACCTTCCTTCTCTACTGTGCTACCCCTCCCGAGGTGGCCGCTG
CCACCTGTCACAATCTCTCCTTCGGCCCCTTCAACGGCGTCTACGAGCAA
CACGCTGAGCACATGGAGGCGGCCGGACTTCATCCTGACGACAATCAATG
GTGGTGTGTCGAGCCTATTTTGAGCAGCAGCCGCGAAGGAGGGGAGGAGG
AGGAGGAGGAGGGGATGGTGGTTCCAGAGGACTGCTACACCCTCCTCACC
CCCTCCACCTCCTCGCCCTCCCTCGTGCCTTGGGCTCCTCTCGGCGAGTG
CGAGGTCTCCATTCCTCTCACTTGGCCTCCTCCCCCGCCAAACCTCAACA
GCGACACGCCCCCACCGGTCGCTCCATTCCCTCAGCAGTCTCCAGGGAAG
GAGAAAGGGGAAGAGGAAGAGGAGGAGGGCCCGTGGGAGGTAGAGTGGAG
GGAGAGGAGACGTCGGAAGGCGGAGGAGGAGCTACGGGTGATCAAAGCTG
CCAAAGAGCGGGCGGCTCAAGAGCTCGACGTCTTCTACAACGCACGGACA
GATCGATTCGCCTTGAGACAAGAAAAAAACCGCGAGAAGGAGGCGGCCTT
CCTGGCTCTTCTACAGGAGGACGAAGAAGCCACCCACGACGGTCGGCCCA
TGCAGCGGGTGTGGGGTCTGGTGGGAGGGAGGGAGGGAGGGAGGGAGGAA
GGGAGGGTGGATCTGGACAGGTTCCGGGGGCTGCTGGAGGAGTTGAAGGA
GGAGGGACTGCCCTCTTCCTCCTCCTCGTCCTCCTCGTCATTTTCTAGGT
TGAGAGGGAAAGGAGGAGGAGAGGATGGAGAGGAGGAGGAGGAGGAAGAG
CGAAGGGAGGAAAGGAGGAGAAGAGGGAGTGGGAAAGGGGAGAACCATTT
ATTACCTTGA
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Synonyms
Publications