NO17G02470, NO17G02470 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G02470 vs. NCBI_GenBank
Match: EWM24128.1 (Ribosomal protein L28e [Nannochloropsis gaditana]) HSP 1 Score: 238.8 bits (608), Expect = 1.100e-59 Identity = 119/150 (79.33%), Postives = 136/150 (90.67%), Query Frame = 0 Query: 1 MADALVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSKK 151 M+DALVWEC+K+NNCFL KRGRTARVG VQFSSEPFNL KKNSFKNSG+ANSKA+DLSVVEGGK+GPKI +++KGKKSL KPATL+++TPLNKAF TS +SIK +T+K GYRKDLQ ALARY+LLKRYTQVKKGLAKP PVK GR S+K Sbjct: 1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVSRK 150
BLAST of NO17G02470 vs. NCBI_GenBank
Match: EJK53834.1 (hypothetical protein THAOC_26649 [Thalassiosira oceanica]) HSP 1 Score: 120.2 bits (300), Expect = 5.700e-24 Identity = 73/151 (48.34%), Postives = 99/151 (65.56%), Query Frame = 0 Query: 2 ADALVWECVKSNNCFLVKR-GRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSKKA 152 AD+LVWE VK+NN F+ K+ GRT+R GS++FS E NLT K+S+K SG+ANSK ID+S V K L+ K KK+ + + LNK FR S K+IK+ + YR DL+ AALA+Y ++ R +V KG+ K PVKKGRG+ +A Sbjct: 5 ADSLVWELVKNNNSFMRKKSGRTSRSGSIRFSVERGNLTNKSSYKYSGLANSKTIDISSVGDN----KAALTLKTKKAATSGKSGKTEIALNKDFRRSEKTIKSQATDNYYRPDLKSAALAKYTVVYRSNRVAKGVKKAVPVKKGRGNSEA 151
BLAST of NO17G02470 vs. NCBI_GenBank
Match: CBN79042.1 (60S ribosomal protein L28, putative [Ectocarpus siliculosus]) HSP 1 Score: 99.0 bits (245), Expect = 1.400e-17 Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = 0 Query: 1 MADALVWECVKSNNCFLVKR-GRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSKKA 152 +++ LVW V+ N CFL KR G+T R G V ++EP NLT NS+K SG+ANSKA+ + + K P ++ K K+ KP ++ L K + S++I T + YR DLQ AAL R++ + R +V+KG KP V GR + KA Sbjct: 4 VSNELVWSLVRRNTCFLYKRNGQTKRSGKVVLTAEPNNLTNVNSYKCSGLANSKAVGIQFAKDAKDRPCAAMTLKSSKNGSKPKKSVGRSLLKKTHPSVSQAIMKQTGGTNYRPDLQHAALVRWSKVHRALRVQKGERKPMTVNAGRKNLKA 155
BLAST of NO17G02470 vs. NCBI_GenBank
Match: OEU09322.1 (hypothetical protein FRACYDRAFT_195398 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 98.6 bits (244), Expect = 1.800e-17 Identity = 63/150 (42.00%), Postives = 87/150 (58.00%), Query Frame = 0 Query: 1 MADALVWECVKSNNCFLVKR-GRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKA-FRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGS 149 +AD+L WE +K NNCFL K+ G+T R G++ FSSE N+ + FK SG+ANSKA D+S + K I +SK +P S PLNK+ FR +IK T YR+DL+ AALA++ + + + G K P KKGRG+ Sbjct: 4 IADSLTWELIKHNNCFLKKKSGKTKRTGTISFSSEKGNIKSLSQFKFSGIANSKAFDISCTDDNKAQLFIKTASKCGT---QPKKSSATIPLNKSDFRKVEATIKNTTSGVFYRRDLESAALAKWTKVYQGNKKANGTKKTRPCKKGRGT 150
BLAST of NO17G02470 vs. NCBI_GenBank
Match: GAX13186.1 (large subunit ribosomal protein L28e [Fistulifera solaris]) HSP 1 Score: 97.8 bits (242), Expect = 3.000e-17 Identity = 64/147 (43.54%), Postives = 84/147 (57.14%), Query Frame = 0 Query: 3 DALVWECVKSNNCFLVKR-GRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGS 149 D L WE V+ NNCFL KR G+T R GSVQFS EP N N K S +ANSKA+D VV G++ +++ + GK + +NK FR S K I + YR+DL+ A LA+Y + + + KG+ KP PVKKGR S Sbjct: 6 DQLTWEIVRRNNCFLKKRNGQTKRSGSVQFSVEPGNCKSLNQLKYSAIANSKALD--VVFSGENRAQLIKKTAGKSG---SKVAVAKINVNKDFRRSEKVIVGQGIDNFYRQDLKGAVLAKYTAVYQANRRAKGITKPVPVKKGRKS 147
BLAST of NO17G02470 vs. NCBI_GenBank
Match: XP_021877699.1 (ribosomal protein L28e [Lobosporangium transversale] >ORZ06778.1 ribosomal protein L28e [Lobosporangium transversale]) HSP 1 Score: 96.3 bits (238), Expect = 8.800e-17 Identity = 67/152 (44.08%), Postives = 87/152 (57.24%), Query Frame = 0 Query: 1 MADALVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARY-ALLKRYTQVKKGLAKPSPVKKGRGSKKA 152 M+ L W +K+NN FLVKR VQFSSE NL KNSFK SG+AN K +D++ G+ +V + K K S YKPA + L K R S++S+ LT ++GYR DL+QAALAR ALL V K +P K G+G + A Sbjct: 1 MSADLTWLLIKNNNSFLVKR------NGVQFSSEAGNLLNKNSFKYSGLANKKTVDITAAPSGR--GVVVATKKAKVSAYKPAKTITKVTLTKGIRKSARSVAGLT-RNGYRADLRQAALARVSALLNSQKPV-----KAAPKKTGKGIRAA 138
BLAST of NO17G02470 vs. NCBI_GenBank
Match: GAX20166.1 (large subunit ribosomal protein L28e [Fistulifera solaris]) HSP 1 Score: 95.9 bits (237), Expect = 1.100e-16 Identity = 66/147 (44.90%), Postives = 85/147 (57.82%), Query Frame = 0 Query: 3 DALVWECVKSNNCFLVKR-GRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGS 149 D L WE V+ NNCFL KR G+T R GSVQFS EP N N K S +ANSKA+D VV G++ +++ KS K A + +NK FR S K I + YR+DL+ A LA+Y + + + KG+ KP PVKKGR S Sbjct: 6 DQLTWEIVRRNNCFLKKRNGQTKRSGSVQFSVEPGNCKSLNQLKYSAIANSKALD--VVFSGENRAQLI-KKTASKSGSKVAVA--KINVNKDFRRSEKVIVGQGIDNYYRQDLKGAVLAKYTAVYQANRRAKGITKPVPVKKGRKS 147
BLAST of NO17G02470 vs. NCBI_GenBank
Match: OTB06918.1 (hypothetical protein M426DRAFT_318628 [Hypoxylon sp. CI-4A]) HSP 1 Score: 92.4 bits (228), Expect = 1.300e-15 Identity = 66/147 (44.90%), Postives = 88/147 (59.86%), Query Frame = 0 Query: 5 LVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLN--KAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSK 150 LVWE V+ NN FLVKR + G VQFS +P NLT KNS K +G N KAI + E K+G K++ SK + + KPA S +T N +A R KS+ LT K+GYR DL++AA+AR + ++R + KP+P K RG K Sbjct: 13 LVWEIVRGNNAFLVKRKES---GGVQFSRDPLNLTNKNSRKYAGFVNEKAIGVQPAE--KNGIKVI--SKKESAALKPAKSSIETTHNGGQATRKVYKSVANLTAKTGYRADLREAAVARVSAVRR----SQKDPKPTPETKPRGVK 148
BLAST of NO17G02470 vs. NCBI_GenBank
Match: KHN97670.1 (60S ribosomal protein L28 [Metarhizium album ARSEF 1941]) HSP 1 Score: 90.9 bits (224), Expect = 3.700e-15 Identity = 62/153 (40.52%), Postives = 88/153 (57.52%), Query Frame = 0 Query: 1 MADALVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPL--NKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSKKA 152 M+ LVWE V++NNCFL K R G VQFS +P NLT KNS K++G N+KA+ ++ K G ++ SK KPA +T NK+ R + K++ LT KSGYR DL+ AA+ R + ++R + K +P P +G +KKA Sbjct: 9 MSSDLVWEIVRNNNCFLSKSNRN---GGVQFSHDPLNLTNKNSRKHAGFVNAKAV--GIIPNEKGGVTVI--SKKTTDATKPAKAFVKTIYGGNKSSRKTYKAVANLTSKSGYRSDLRSAAVERVSAIRRAQRPVK--PEPEPKLRGNKAKKA 152
BLAST of NO17G02470 vs. NCBI_GenBank
Match: XP_020166090.1 (60S ribosomal protein L28-1-like [Aegilops tauschii subsp. tauschii] >BAJ88136.1 predicted protein [Hordeum vulgare subsp. vulgare] >CDM83728.1 unnamed protein product [Triticum aestivum]) HSP 1 Score: 90.5 bits (223), Expect = 4.800e-15 Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 0 Query: 1 MADALVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAK 139 ++D+LVWE V+ NNCFL+K+ + VQFS EP NL +S+K SG+AN K + +V + +VLS+ K KPA +H+T + K FR +K++K + YR DL + ALAR + + R QV K K Sbjct: 4 VSDSLVWELVRKNNCFLIKQFGNSN-AKVQFSKEPNNLYNVHSYKYSGLANKKTV--TVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVK 138 The following BLAST results are available for this feature:
BLAST of NO17G02470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G02470 ID=NO17G02470|Name=NO17G02470|organism=Nannochloropsis oceanica|type=gene|length=1509bpback to top protein sequence of NO17G02470.1 >NO17G02470.1-protein ID=NO17G02470.1-protein|Name=NO17G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bpback to top Synonyms
Publications
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