NO17G02470.1, NO17G02470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02470.1
Unique NameNO17G02470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length766
Alignment locationchr17:731653..733161 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:731653..733161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02470.1 vs.
Match: EWM24128.1 (Ribosomal protein L28e [Nannochloropsis gaditana])

HSP 1 Score: 238.8 bits (608), Expect = 1.100e-59
Identity = 119/150 (79.33%), Postives = 136/150 (90.67%), Query Frame = 0 
Query:    1 MADALVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSKK 151
            M+DALVWEC+K+NNCFL KRGRTARVG VQFSSEPFNL KKNSFKNSG+ANSKA+DLSVVEGGK+GPKI +++KGKKSL KPATL+++TPLNKAF TS +SIK +T+K GYRKDLQ  ALARY+LLKRYTQVKKGLAKP PVK GR S+K
Sbjct:    1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVSRK 150
The following BLAST results are available for this feature:
BLAST of NO17G02470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24128.11.100e-5979.33Ribosomal protein L28e [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02470NO17G02470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02470.1NO17G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02470.1.cds1NO17G02470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02470.1.cds2NO17G02470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02470.1.cds3NO17G02470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02470.1.cds4NO17G02470.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02470.1 ID=NO17G02470.1|Name=NO17G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=766bp
ACAGCTACCACCACTACATTCACTACATTAGCACAATGGCGGACGCGTTG
GTTTGGGAATGTGTCAAGAGCAACAACTGCTTTTTGGTGAAGCGTGGCCG
CACCGCCCGCGTGGGGAGCGTGCAGTTTTCTAGTGAGCCGTTCAATCTGA
CGAAAAAGAACAGCTTCAAGAACAGCGGGGTGGCCAACAGCAAGGCCATT
GACCTGTCGGTGGTGGAGGGAGGCAAACACGGCCCTAAGATTGTCCTGTC
GTCCAAGGGCAAGAAGTCTCTCTACAAGCCCGCGACCCTCTCCCACCAGA
CCCCCCTGAACAAAGCCTTCCGTACCAGCAGCAAGAGCATCAAGGCTCTG
ACAGACAAGAGTGGCTATCGCAAAGACTTGCAGCAGGCGGCCTTGGCCCG
ATATGCTTTGTTGAAACGTTACACCCAGGTCAAGAAGGGGTTGGCCAAGC
CCTCTCCGGTCAAGAAAGGCCGTGGAAGCAAGAAGGCGTAAAGTTCTACC
TCGATGTTCGCTAGCTAGAAGGAAGAAAGGAGAGGAGGGAGGATGAGAAA
AATCGGTGGTAGGAAAGCAGAGTTAACTTGACGCTGCGGTGTGATGGGCC
TGGATGCCTTCCTAGGGACGTGAGTTGGTTTGGTTTGGGGGGAATACTTC
CACCTGGTCGATTCGCGTGGGTAAAGAATATAGAAAAGGAAACAGGCAAT
TGCATCTGTGGCCAAGGCTTCATACGGTATTAATTATGGTTGTGATCACT
TCACGCTGTTGGTGCT
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protein sequence of NO17G02470.1

>NO17G02470.1-protein ID=NO17G02470.1-protein|Name=NO17G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MADALVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVA
NSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSK
SIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSKK
A*
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mRNA from alignment at chr17:731653..733161+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02470.1 ID=NO17G02470.1|Name=NO17G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp|location=Sequence derived from alignment at chr17:731653..733161+ (Nannochloropsis oceanica)
ACAGCTACCACCACTACATTCACTACATTAGCACAATGGCGGACGCGTTG
GTTTGGGAATGTGTCAAGGTAAGTGAGGAGCGAGACGAGGGGAGAGGAAA
GATGATAGACATCAGGGAGACGAATGAGAGGGGGTCAGCGTACTGCTGCT
ACGGCGGCGGGTGCCACTGCCTCCGATAGCTATCGTTGACATGTTGCGGA
GTTGCTGGGGGGAAGATGAAGTGGAGAAGGGCATAGGCACTATTTTGGCC
CGTGAGGAGAGACGGCCGGGGTGGGAATGTAGAAGCTCCCGCTGCTGAGG
AAGGAGTTGCACGCCACGACTCACCTTCCAGTCGCCCCCAATTCTCCTCG
TTGAGAATGGCCTTTGCTTTAAGTTTTATAGATGAAGGAATCGGTCGCCG
GTGGTTGGTGCACAAGGCTGCCCTACGCAAGCGTCTTTCCTCCCTCACTC
TCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCTCGCAGAGCAACAACTG
CTTTTTGGTGAAGCGTGGCCGCACCGCCCGCGTGGGGAGCGTGCAGTTTT
CTAGTGAGCCGTTCAATCTGACGAAAAAGAACAGCTTCAAGAACAGCGGG
GTGGCCAACAGCAAGGCCATTGACCTGTCGGTGGTGGAGGGAGGCAAACA
CGGCCCTAAGATTGTCCTGTCGTCCAAGGTAAAAAGGAAGCCAGGGAAGG
AGGGGGAAAAGGAGGCTGAAAGGGGGGATAAAATAAAAAATATGCCCAGC
AATATTGCAACTACCATACGCGCCATTGACCCCTTGGTATGCCTCCCTGC
CTCCCTCCCTCCCTCCCTCCCTCTCAGGGCAAGAAGTCTCTCTACAAGCC
CGCGACCCTCTCCCACCAGACCCCCCTGAACAAAGCCTTCCGTACCAGCA
GCAAGAGCATCAAGGCTCTGACAGACAAGAGTGGCTATCGCAAAGACTTG
CAGCAGGCGGCCTTGGCCCGATATGCTTTGTTGAAACGGTGAGGGAGAGA
GGGAAGGAAGGAGGAGGCGGGCGGGTTTTTTGGTTTCCGGATGTTTTTTG
TCTCATTGGTCATGCATGCACAACCATTAAATAGCTTTTTAGCTCGTTTT
CTCCCCTCGTCAAGCTATTCACGTTGTCCCTCCCTCCCTCCCTCCCTTGT
CTAATCCTCAGTTACACCCAGGTCAAGAAGGGGTTGGCCAAGCCCTCTCC
GGTCAAGAAAGGCCGTGGAAGCAAGAAGGCGTAAAGTTCTACCTCGATGT
TCGCTAGCTAGAAGGAAGAAAGGAGAGGAGGGAGGATGAGAAAAATCGGT
GGTAGGAAAGCAGAGTTAACTTGACGCTGCGGTGTGATGGGCCTGGATGC
CTTCCTAGGGACGTGAGTTGGTTTGGTTTGGGGGGAATACTTCCACCTGG
TCGATTCGCGTGGGTAAAGAATATAGAAAAGGAAACAGGCAATTGCATCT
GTGGCCAAGGCTTCATACGGTATTAATTATGGTTGTGATCACTTCACGCT
GTTGGTGCT
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Coding sequence (CDS) from alignment at chr17:731653..733161+

>NO17G02470.1 ID=NO17G02470.1|Name=NO17G02470.1|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at chr17:731653..733161+ (Nannochloropsis oceanica)
ATGGCGGACGCGTTGGTTTGGGAATGTGTCAAGAGCAACAACTGCTTTTT
GGTGAAGCGTGGCCGCACCGCCCGCGTGGGGAGCGTGCAGTTTTCTAGTG
AGCCGTTCAATCTGACGAAAAAGAACAGCTTCAAGAACAGCGGGGTGGCC
AACAGCAAGGCCATTGACCTGTCGGTGGTGGAGGGAGGCAAACACGGCCC
TAAGATTGTCCTGTCGTCCAAGGGCAAGAAGTCTCTCTACAAGCCCGCGA
CCCTCTCCCACCAGACCCCCCTGAACAAAGCCTTCCGTACCAGCAGCAAG
AGCATCAAGGCTCTGACAGACAAGAGTGGCTATCGCAAAGACTTGCAGCA
GGCGGCCTTGGCCCGATATGCTTTGTTGAAACGTTACACCCAGGTCAAGA
AGGGGTTGGCCAAGCCCTCTCCGGTCAAGAAAGGCCGTGGAAGCAAGAAG
GCGTAA
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Synonyms
Publications