NO17G02470, NO17G02470 (gene) Nannochloropsis oceanica

Overview
NameNO17G02470
Unique NameNO17G02470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1509
Alignment locationchr17:731653..733161 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein L28e
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:731653..733161 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR002672Ribosomal_L28e
IPR029004L28e/Mak16
Homology
BLAST of NO17G02470 vs. NCBI_GenBank
Match: EWM24128.1 (Ribosomal protein L28e [Nannochloropsis gaditana])

HSP 1 Score: 238.8 bits (608), Expect = 1.100e-59
Identity = 119/150 (79.33%), Postives = 136/150 (90.67%), Query Frame = 0
Query:    1 MADALVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSKK 151
            M+DALVWEC+K+NNCFL KRGRTARVG VQFSSEPFNL KKNSFKNSG+ANSKA+DLSVVEGGK+GPKI +++KGKKSL KPATL+++TPLNKAF TS +SIK +T+K GYRKDLQ  ALARY+LLKRYTQVKKGLAKP PVK GR S+K
Sbjct:    1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVSRK 150          
BLAST of NO17G02470 vs. NCBI_GenBank
Match: EJK53834.1 (hypothetical protein THAOC_26649 [Thalassiosira oceanica])

HSP 1 Score: 120.2 bits (300), Expect = 5.700e-24
Identity = 73/151 (48.34%), Postives = 99/151 (65.56%), Query Frame = 0
Query:    2 ADALVWECVKSNNCFLVKR-GRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSKKA 152
            AD+LVWE VK+NN F+ K+ GRT+R GS++FS E  NLT K+S+K SG+ANSK ID+S V       K  L+ K KK+     +   +  LNK FR S K+IK+    + YR DL+ AALA+Y ++ R  +V KG+ K  PVKKGRG+ +A
Sbjct:    5 ADSLVWELVKNNNSFMRKKSGRTSRSGSIRFSVERGNLTNKSSYKYSGLANSKTIDISSVGDN----KAALTLKTKKAATSGKSGKTEIALNKDFRRSEKTIKSQATDNYYRPDLKSAALAKYTVVYRSNRVAKGVKKAVPVKKGRGNSEA 151          
BLAST of NO17G02470 vs. NCBI_GenBank
Match: CBN79042.1 (60S ribosomal protein L28, putative [Ectocarpus siliculosus])

HSP 1 Score: 99.0 bits (245), Expect = 1.400e-17
Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = 0
Query:    1 MADALVWECVKSNNCFLVKR-GRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSKKA 152
            +++ LVW  V+ N CFL KR G+T R G V  ++EP NLT  NS+K SG+ANSKA+ +   +  K  P   ++ K  K+  KP     ++ L K   + S++I   T  + YR DLQ AAL R++ + R  +V+KG  KP  V  GR + KA
Sbjct:    4 VSNELVWSLVRRNTCFLYKRNGQTKRSGKVVLTAEPNNLTNVNSYKCSGLANSKAVGIQFAKDAKDRPCAAMTLKSSKNGSKPKKSVGRSLLKKTHPSVSQAIMKQTGGTNYRPDLQHAALVRWSKVHRALRVQKGERKPMTVNAGRKNLKA 155          
BLAST of NO17G02470 vs. NCBI_GenBank
Match: OEU09322.1 (hypothetical protein FRACYDRAFT_195398 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 98.6 bits (244), Expect = 1.800e-17
Identity = 63/150 (42.00%), Postives = 87/150 (58.00%), Query Frame = 0
Query:    1 MADALVWECVKSNNCFLVKR-GRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKA-FRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGS 149
            +AD+L WE +K NNCFL K+ G+T R G++ FSSE  N+   + FK SG+ANSKA D+S  +  K    I  +SK      +P   S   PLNK+ FR    +IK  T    YR+DL+ AALA++  + +  +   G  K  P KKGRG+
Sbjct:    4 IADSLTWELIKHNNCFLKKKSGKTKRTGTISFSSEKGNIKSLSQFKFSGIANSKAFDISCTDDNKAQLFIKTASKCGT---QPKKSSATIPLNKSDFRKVEATIKNTTSGVFYRRDLESAALAKWTKVYQGNKKANGTKKTRPCKKGRGT 150          
BLAST of NO17G02470 vs. NCBI_GenBank
Match: GAX13186.1 (large subunit ribosomal protein L28e [Fistulifera solaris])

HSP 1 Score: 97.8 bits (242), Expect = 3.000e-17
Identity = 64/147 (43.54%), Postives = 84/147 (57.14%), Query Frame = 0
Query:    3 DALVWECVKSNNCFLVKR-GRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGS 149
            D L WE V+ NNCFL KR G+T R GSVQFS EP N    N  K S +ANSKA+D  VV  G++  +++  + GK           +  +NK FR S K I      + YR+DL+ A LA+Y  + +  +  KG+ KP PVKKGR S
Sbjct:    6 DQLTWEIVRRNNCFLKKRNGQTKRSGSVQFSVEPGNCKSLNQLKYSAIANSKALD--VVFSGENRAQLIKKTAGKSG---SKVAVAKINVNKDFRRSEKVIVGQGIDNFYRQDLKGAVLAKYTAVYQANRRAKGITKPVPVKKGRKS 147          
BLAST of NO17G02470 vs. NCBI_GenBank
Match: XP_021877699.1 (ribosomal protein L28e [Lobosporangium transversale] >ORZ06778.1 ribosomal protein L28e [Lobosporangium transversale])

HSP 1 Score: 96.3 bits (238), Expect = 8.800e-17
Identity = 67/152 (44.08%), Postives = 87/152 (57.24%), Query Frame = 0
Query:    1 MADALVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARY-ALLKRYTQVKKGLAKPSPVKKGRGSKKA 152
            M+  L W  +K+NN FLVKR        VQFSSE  NL  KNSFK SG+AN K +D++    G+    +V + K K S YKPA    +  L K  R S++S+  LT ++GYR DL+QAALAR  ALL     V     K +P K G+G + A
Sbjct:    1 MSADLTWLLIKNNNSFLVKR------NGVQFSSEAGNLLNKNSFKYSGLANKKTVDITAAPSGR--GVVVATKKAKVSAYKPAKTITKVTLTKGIRKSARSVAGLT-RNGYRADLRQAALARVSALLNSQKPV-----KAAPKKTGKGIRAA 138          
BLAST of NO17G02470 vs. NCBI_GenBank
Match: GAX20166.1 (large subunit ribosomal protein L28e [Fistulifera solaris])

HSP 1 Score: 95.9 bits (237), Expect = 1.100e-16
Identity = 66/147 (44.90%), Postives = 85/147 (57.82%), Query Frame = 0
Query:    3 DALVWECVKSNNCFLVKR-GRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGS 149
            D L WE V+ NNCFL KR G+T R GSVQFS EP N    N  K S +ANSKA+D  VV  G++  +++      KS  K A    +  +NK FR S K I      + YR+DL+ A LA+Y  + +  +  KG+ KP PVKKGR S
Sbjct:    6 DQLTWEIVRRNNCFLKKRNGQTKRSGSVQFSVEPGNCKSLNQLKYSAIANSKALD--VVFSGENRAQLI-KKTASKSGSKVAVA--KINVNKDFRRSEKVIVGQGIDNYYRQDLKGAVLAKYTAVYQANRRAKGITKPVPVKKGRKS 147          
BLAST of NO17G02470 vs. NCBI_GenBank
Match: OTB06918.1 (hypothetical protein M426DRAFT_318628 [Hypoxylon sp. CI-4A])

HSP 1 Score: 92.4 bits (228), Expect = 1.300e-15
Identity = 66/147 (44.90%), Postives = 88/147 (59.86%), Query Frame = 0
Query:    5 LVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLN--KAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSK 150
            LVWE V+ NN FLVKR  +   G VQFS +P NLT KNS K +G  N KAI +   E  K+G K++  SK + +  KPA  S +T  N  +A R   KS+  LT K+GYR DL++AA+AR + ++R     +   KP+P  K RG K
Sbjct:   13 LVWEIVRGNNAFLVKRKES---GGVQFSRDPLNLTNKNSRKYAGFVNEKAIGVQPAE--KNGIKVI--SKKESAALKPAKSSIETTHNGGQATRKVYKSVANLTAKTGYRADLREAAVARVSAVRR----SQKDPKPTPETKPRGVK 148          
BLAST of NO17G02470 vs. NCBI_GenBank
Match: KHN97670.1 (60S ribosomal protein L28 [Metarhizium album ARSEF 1941])

HSP 1 Score: 90.9 bits (224), Expect = 3.700e-15
Identity = 62/153 (40.52%), Postives = 88/153 (57.52%), Query Frame = 0
Query:    1 MADALVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPL--NKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSKKA 152
            M+  LVWE V++NNCFL K  R    G VQFS +P NLT KNS K++G  N+KA+   ++   K G  ++  SK      KPA    +T    NK+ R + K++  LT KSGYR DL+ AA+ R + ++R  +  K   +P P  +G  +KKA
Sbjct:    9 MSSDLVWEIVRNNNCFLSKSNRN---GGVQFSHDPLNLTNKNSRKHAGFVNAKAV--GIIPNEKGGVTVI--SKKTTDATKPAKAFVKTIYGGNKSSRKTYKAVANLTSKSGYRSDLRSAAVERVSAIRRAQRPVK--PEPEPKLRGNKAKKA 152          
BLAST of NO17G02470 vs. NCBI_GenBank
Match: XP_020166090.1 (60S ribosomal protein L28-1-like [Aegilops tauschii subsp. tauschii] >BAJ88136.1 predicted protein [Hordeum vulgare subsp. vulgare] >CDM83728.1 unnamed protein product [Triticum aestivum])

HSP 1 Score: 90.5 bits (223), Expect = 4.800e-15
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 0
Query:    1 MADALVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVANSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSKSIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAK 139
            ++D+LVWE V+ NNCFL+K+   +    VQFS EP NL   +S+K SG+AN K +  +V    +    +VLS+   K   KPA  +H+T + K FR  +K++K     + YR DL + ALAR + + R  QV K   K
Sbjct:    4 VSDSLVWELVRKNNCFLIKQFGNSN-AKVQFSKEPNNLYNVHSYKYSGLANKKTV--TVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVK 138          
The following BLAST results are available for this feature:
BLAST of NO17G02470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24128.11.100e-5979.33Ribosomal protein L28e [Nannochloropsis gaditana][more]
EJK53834.15.700e-2448.34hypothetical protein THAOC_26649 [Thalassiosira oc... [more]
CBN79042.11.400e-1740.1360S ribosomal protein L28, putative [Ectocarpus si... [more]
OEU09322.11.800e-1742.00hypothetical protein FRACYDRAFT_195398 [Fragilario... [more]
GAX13186.13.000e-1743.54large subunit ribosomal protein L28e [Fistulifera ... [more]
XP_021877699.18.800e-1744.08ribosomal protein L28e [Lobosporangium transversal... [more]
GAX20166.11.100e-1644.90large subunit ribosomal protein L28e [Fistulifera ... [more]
OTB06918.11.300e-1544.90hypothetical protein M426DRAFT_318628 [Hypoxylon s... [more]
KHN97670.13.700e-1540.5260S ribosomal protein L28 [Metarhizium album ARSEF... [more]
XP_020166090.14.800e-1539.8660S ribosomal protein L28-1-like [Aegilops tauschi... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL160nonsL160Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR029ngnoR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008434NSK008434Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02470.1NO17G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606363gene_9316Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101068g1gene6338Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02470.1NO17G02470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02470 ID=NO17G02470|Name=NO17G02470|organism=Nannochloropsis oceanica|type=gene|length=1509bp
ACAGCTACCACCACTACATTCACTACATTAGCACAATGGCGGACGCGTTG
GTTTGGGAATGTGTCAAGgtaagtgaggagcgagacgaggggagaggaaa
gatgatagacatcagggagacgaatgagagggggtcagcgtactgctgct
acggcggcgggtgccactgcctccgatagctatcgttgacatgttgcgga
gttgctggggggaagatgaagtggagaagggcataggcactattttggcc
cgtgaggagagacggccggggtgggaatgtagaagctcccgctgctgagg
aaggagttgcacgccacgactcaccttccagtcgcccccaattctcctcg
ttgagaatggcctttgctttaagttttatagatgaaggaatcggtcgccg
gtggttggtgcacaaggctgccctacgcaagcgtctttcctccctcactc
tctccctccctccctccctccctccctcccctctcgcagAGCAACAACTG
CTTTTTGGTGAAGCGTGGCCGCACCGCCCGCGTGGGGAGCGTGCAGTTTT
CTAGTGAGCCGTTCAATCTGACGAAAAAGAACAGCTTCAAGAACAGCGGG
GTGGCCAACAGCAAGGCCATTGACCTGTCGGTGGTGGAGGGAGGCAAACA
CGGCCCTAAGATTGTCCTGTCGTCCAAGgtaaaaaggaagccagggaagg
agggggaaaaggaggctgaaaggggggataaaataaaaaatatgcccagc
aatattgcaactaccatacgcgccattgaccccttggtatgcctccctgc
ctccctccctccctccctccctctcagGGCAAGAAGTCTCTCTACAAGCC
CGCGACCCTCTCCCACCAGACCCCCCTGAACAAAGCCTTCCGTACCAGCA
GCAAGAGCATCAAGGCTCTGACAGACAAGAGTGGCTATCGCAAAGACTTG
CAGCAGGCGGCCTTGGCCCGATATGCTTTGTTGAAACGgtgagggagaga
gggaaggaaggaggaggcgggcgggttttttggtttccggatgttttttg
tctcattggtcatgcatgcacaaccattaaatagctttttagctcgtttt
ctcccctcgtcaagctattcacgttgtccctccctccctccctcccttgt
ctaatcctcagTTACACCCAGGTCAAGAAGGGGTTGGCCAAGCCCTCTCC
GGTCAAGAAAGGCCGTGGAAGCAAGAAGGCGTAAAGTTCTACCTCGATGT
TCGCTAGCTAGAAGGAAGAAAGGAGAGGAGGGAGGATGAGAAAAATCGGT
GGTAGGAAAGCAGAGTTAACTTGACGCTGCGGTGTGATGGGCCTGGATGC
CTTCCTAGGGACGTGAGTTGGTTTGGTTTGGGGGGAATACTTCCACCTGG
TCGATTCGCGTGGGTAAAGAATATAGAAAAGGAAACAGGCAATTGCATCT
GTGGCCAAGGCTTCATACGGTATTAATTATGGTTGTGATCACTTCACGCT
GTTGGTGCT
back to top

protein sequence of NO17G02470.1

>NO17G02470.1-protein ID=NO17G02470.1-protein|Name=NO17G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MADALVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLTKKNSFKNSGVA
NSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSK
SIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSKK
A*
back to top
Synonyms
Publications