NO17G02250, NO17G02250 (gene) Nannochloropsis oceanica

Overview
NameNO17G02250
Unique NameNO17G02250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2056
Alignment locationchr17:659301..661356 -

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Properties
Property NameValue
Descriptionsyntaxin of plants 32
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:659301..661356 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR000727T_SNARE_dom
Homology
[Close]
BLAST of NO17G02250 vs. NCBI_GenBank
Match: CBN77692.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 105.1 bits (261), Expect = 6.100e-19
Identity = 74/190 (38.95%), Postives = 95/190 (50.00%), Query Frame = 0 
Query:    2 DRTREFQGLLKLFGMTDLPVEDEPDXXXXXXXXXXXXXXXXXXXXXXXTSDFGAAAATVAKEFTSIRRLVHRLQRLVTRKGMHNDPTAEIEDVTAVFKKDLGRLQGDIESLLRFAEKHYR----QGQQRHRHCTCVVEGLKIRATEHTKLFQAALQVRQGVLKDQADRRKLFTHSARG--PALAYDSPLF 186
            DRT EFQG +  F  T   V +  +                       TS+F   AA+VA  F    RL+ RL++LV RKG  N+P AEI DV  +F+ D+  LQ DI SL R A+   R       QR  HC  +V  L+  A EHTK F+ AL +R  V K Q +R++ F+HS RG  PA   D P F
Sbjct:    5 DRTEEFQGAVSAFRPTVTVVNNSGE---------AAAIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLKKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDISSLQRHADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALLLRAAVEKQQNERQRKFSHS-RGVAPATQLDYPFF 184
[Close]
BLAST of NO17G02250 vs. NCBI_GenBank
Match: XP_008604139.1 (hypothetical protein SDRG_00443 [Saprolegnia diclina VS20] >EQC42716.1 hypothetical protein SDRG_00443 [Saprolegnia diclina VS20])

HSP 1 Score: 81.6 bits (200), Expect = 7.200e-12
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 0 
Query:  399 QRDTA-SRLKDARAIEKAIVELGQTFSKMAGLVAAQGEVVMRIDDDMEMALEDVRKGHTEMENYLRIVRGNRAVIIKVFVVLIVFILLFVRYF 491
            QR TA +RL DA+ IE  IVE+   +++M+ L+A+QGEV+ RIDDDM  A  +V  GH E+  Y   + GNR++I+K+F++L+VFI LF+  F
Sbjct:  255 QRYTAQARLNDAKHIESTIVEISSMYNRMSSLIASQGEVLERIDDDMTTAQMNVEAGHNELLKYFTSMSGNRSLILKIFLILVVFIYLFLVVF 347
[Close]
BLAST of NO17G02250 vs. NCBI_GenBank
Match: XP_012201438.1 (hypothetical protein SPRG_07267 [Saprolegnia parasitica CBS 223.65] >KDO27989.1 hypothetical protein SPRG_07267 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 81.6 bits (200), Expect = 7.200e-12
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 0 
Query:  399 QRDTA-SRLKDARAIEKAIVELGQTFSKMAGLVAAQGEVVMRIDDDMEMALEDVRKGHTEMENYLRIVRGNRAVIIKVFVVLIVFILLFVRYF 491
            QR TA +RL DA+ IE  IVE+   +++M+ L+A+QGEV+ RIDDDM  A  +V  GH E+  Y   + GNR++I+K+F++L+VFI LF+  F
Sbjct:  252 QRYTAQARLNDAKHIESTIVEISSMYNRMSSLIASQGEVLERIDDDMTTAQMNVEAGHNELLKYFTSMSGNRSLILKIFLILVVFIYLFLVVF 344
[Close]
BLAST of NO17G02250 vs. NCBI_GenBank
Match: OQR89732.1 (hypothetical protein THRCLA_09605 [Thraustotheca clavata])

HSP 1 Score: 81.6 bits (200), Expect = 7.200e-12
Identity = 41/87 (47.13%), Postives = 62/87 (71.26%), Query Frame = 0 
Query:  404 SRLKDARAIEKAIVELGQTFSKMAGLVAAQGEVVMRIDDDMEMALEDVRKGHTEMENYLRIVRGNRAVIIKVFVVLIVFILLFVRYF 491
            +RL DA  +E  I E+G   S+M+ L+A+QGEV+ RIDDDM +A ++V  GH E+  Y   + GNR++I+K+F++L+VFI LF+  F
Sbjct:  225 ARLNDALQMESTIAEIGSMHSRMSSLIASQGEVLERIDDDMTLAQDNVEAGHNELLKYFATMSGNRSLILKIFIILLVFIYLFLVVF 311
[Close]
BLAST of NO17G02250 vs. NCBI_GenBank
Match: OQR91944.1 (hypothetical protein ACHHYP_04179 [Achlya hypogyna])

HSP 1 Score: 79.3 bits (194), Expect = 3.600e-11
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0 
Query:  404 SRLKDARAIEKAIVELGQTFSKMAGLVAAQGEVVMRIDDDMEMALEDVRKGHTEMENYLRIVRGNRAVIIKVFVVLIVFILLFVRYF 491
            +RL DA  IE  IVE+   +++M+ L+A+QGEV+ RIDDDM  A  +V  GH E+  Y   + GNR++I+K+F+VLIVFI LF+  F
Sbjct:  239 ARLNDAMHIESTIVEISSMYNRMSTLIASQGEVLERIDDDMNTAQMNVEAGHNELLKYFTSMSGNRSLILKIFLVLIVFIYLFLVVF 325
[Close]
BLAST of NO17G02250 vs. NCBI_GenBank
Match: XP_009036165.1 (hypothetical protein AURANDRAFT_25009 [Aureococcus anophagefferens] >EGB09038.1 hypothetical protein AURANDRAFT_25009 [Aureococcus anophagefferens])

HSP 1 Score: 77.8 bits (190), Expect = 1.000e-10
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 0 
Query:  399 QRDTASRLKDARAIEKAIVELGQTFSKMAGLVAAQGEVVMRIDDDMEMALEDVRKGHTEMENYLRIVRGNRAVIIKVFVVLIVFILLFVRY 490
            ++ +  RL  A  IEK I +LG+ FS+ + LVA Q EVV R+DDD+E AL +V  GH E+     ++RGNRA+ +KVF VLI  I+LFV +
Sbjct:    3 EQTSRRRLDTAHNIEKEIGKLGEVFSRFSSLVAQQAEVVERLDDDVEGALGEVEMGHAELLKAQEVLRGNRALFLKVFAVLIALIVLFVLF 93
[Close]
BLAST of NO17G02250 vs. NCBI_GenBank
Match: XP_008895575.1 (hypothetical protein PPTG_04964 [Phytophthora parasitica INRA-310] >ETI38277.1 hypothetical protein F443_15955 [Phytophthora parasitica P1569] >ETK78483.1 hypothetical protein L915_15506 [Phytophthora parasitica] >ETL31910.1 hypothetical protein L916_15402 [Phytophthora parasitica] >ETL85139.1 hypothetical protein L917_15226 [Phytophthora parasitica] >ETM38301.1 hypothetical protein L914_15367 [Phytophthora parasitica] >ETN19756.1 hypothetical protein PPTG_04964 [Phytophthora parasitica INRA-310] >ETO67034.1 hypothetical protein F444_15936 [Phytophthora parasitica P1976] >ETP08148.1 hypothetical protein F441_15795 [Phytophthora parasitica CJ01A1] >ETP36207.1 hypothetical protein F442_15800 [Phytophthora parasitica P10297])

HSP 1 Score: 76.6 bits (187), Expect = 2.300e-10
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 0 
Query:  398 PQRDTASRLKDARAIEKAIVELGQTFSKMAGLVAAQGEVVMRIDDDMEMALEDVRKGHTEMENYLRIVRGNRAVIIKVFVVLIVFILLFVRYF 491
            P+ D  +R  +A  +E  IVE+   +++MA +VA QGE++ RIDDDM++A  +V   H E+     +V+GNR++I+K+F+VLI+ I LFV  F
Sbjct:  261 PREDAQTRYNNAAQVESTIVEITGMYTRMATMVAEQGEIISRIDDDMDIAQTNVEAAHGELLKLFNMVQGNRSLILKIFLVLILVIFLFVVVF 353
[Close]
BLAST of NO17G02250 vs. NCBI_GenBank
Match: KUF79253.1 (Syntaxin-31 [Phytophthora nicotianae] >KUG00326.1 Syntaxin-31 [Phytophthora nicotianae])

HSP 1 Score: 76.6 bits (187), Expect = 2.300e-10
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 0 
Query:  398 PQRDTASRLKDARAIEKAIVELGQTFSKMAGLVAAQGEVVMRIDDDMEMALEDVRKGHTEMENYLRIVRGNRAVIIKVFVVLIVFILLFVRYF 491
            P+ D  +R  +A  +E  IVE+   +++MA +VA QGE++ RIDDDM++A  +V   H E+     +V+GNR++I+K+F+VLI+ I LFV  F
Sbjct:  213 PREDAQTRYNNAAQVESTIVEITGMYTRMATMVAEQGEIISRIDDDMDIAQTNVEAAHGELLKLFNMVQGNRSLILKIFLVLILVIFLFVVVF 305
[Close]
BLAST of NO17G02250 vs. NCBI_GenBank
Match: POM70717.1 (Syntaxin 5 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 76.6 bits (187), Expect = 2.300e-10
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 0 
Query:  398 PQRDTASRLKDARAIEKAIVELGQTFSKMAGLVAAQGEVVMRIDDDMEMALEDVRKGHTEMENYLRIVRGNRAVIIKVFVVLIVFILLFVRYF 491
            P+ D  +R  +A  +E  IVE+   +++MA +VA QGE++ RIDDDM++A  +V   H E+     +V+GNR++I+K+F+VLI+ I LFV  F
Sbjct:  212 PREDAQTRYNNAAQVESTIVEITGMYTRMATMVAEQGEIISRIDDDMDIAQTNVEAAHGELLKLFNMVQGNRSLILKIFLVLILVIFLFVVVF 304
[Close]
BLAST of NO17G02250 vs. NCBI_GenBank
Match: XP_002906926.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY66327.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 75.9 bits (185), Expect = 4.000e-10
Identity = 39/93 (41.94%), Postives = 63/93 (67.74%), Query Frame = 0 
Query:  398 PQRDTASRLKDARAIEKAIVELGQTFSKMAGLVAAQGEVVMRIDDDMEMALEDVRKGHTEMENYLRIVRGNRAVIIKVFVVLIVFILLFVRYF 491
            P+ D  +R  +A  +E  IVE+   +++MA +VA QGE++ RIDDDM++A  +V   H E+     +V+GNR++I+K+F+V+I+ I LFV  F
Sbjct:  261 PREDAQTRYNNAAQVESTIVEITGMYTRMATMVAEQGEIISRIDDDMDIAQTNVEAAHGELLKLFNMVQGNRSLILKIFLVMILVIFLFVVVF 353
The following BLAST results are available for this feature:
BLAST of NO17G02250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN77692.16.100e-1938.95Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
XP_008604139.17.200e-1248.39hypothetical protein SDRG_00443 [Saprolegnia dicli... [more]
XP_012201438.17.200e-1248.39hypothetical protein SPRG_07267 [Saprolegnia paras... [more]
OQR89732.17.200e-1247.13hypothetical protein THRCLA_09605 [Thraustotheca c... [more]
OQR91944.13.600e-1149.43hypothetical protein ACHHYP_04179 [Achlya hypogyna... [more]
XP_009036165.11.000e-1048.35hypothetical protein AURANDRAFT_25009 [Aureococcus... [more]
XP_008895575.12.300e-1043.01hypothetical protein PPTG_04964 [Phytophthora para... [more]
KUF79253.12.300e-1043.01Syntaxin-31 [Phytophthora nicotianae] >KUG00326.1 ... [more]
POM70717.12.300e-1043.01Syntaxin 5 [Phytophthora palmivora var. palmivora][more]
XP_002906926.14.000e-1041.94conserved hypothetical protein [Phytophthora infes... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003011NSK003011Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02250.1NO17G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599565gene_7660Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02250.1NO17G02250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02250 ID=NO17G02250|Name=NO17G02250|organism=Nannochloropsis oceanica|type=gene|length=2056bp
ACAGGACAACTAAGCCGGCCAATACAGAGCTTGGTCCACGCAGCCAAGCC
GCTTGTCTTTCTCCCCCCTCGCCCGTTGTTGTTTTGGCGATAAGCTACTA
ACGCAACGCACACAAGCACTCAAGCACTAGTGCTTAGCACTCAAGCAGCA
CAAACTCCCACCACCCACGATCAGGGCCCCCAGTCCAGCCGTGGTCATGG
ACCGCACTCGCGAGTTTCAGGGCCTCCTCAAACTATTTGGCATGACAGAT
TTGCCCGTCGAGgtacgtttgggtatataagggggacaaggtggggcatg
agtagcttgtgtgtgatggttgtgcggggcttcgccgctgtacttccccc
attttcactttatccctgtgcagtttcagtaattccgccagtcgtgcagc
ccgaatggaaattgtgccctcttctcccatcttcattgtctcgatccaat
tcctcccctccctccctcccttcagGACGAGCCCGACGACTTCCACCACA
ACGGCTCCTCCTCCACTGACCCCTCCTCCTCCACTTCCTCCTTCCCTCCG
CATGGCACTTCTGACTTCGGGGCTGCGGCCGCTACAGTTGCCAAGGAGTT
CACGAGTATTCGGAGACTTGTCCATCGGTTACAGCGTTTGGTGACACGAA
AAGGCATGCACAATGACCCCACCGCGGAGATAGAAGACGTGACGGCGGTC
TTTAAGAAGGACCTGGGGAGATTGCAAGGGGACATTGAGAGCTTACTGCG
GTTCGCGGAAAAACACTATCGgtagggaaggagggaaggaggaagggagg
gagccaggacgggctggagagcacacatgagattgcttgccttgtttcta
ttcaatcagatgcacataatacagGCAAGGCCAACAACGCCACCGACACT
GCACCTGTGTCGTTGAAGGCCTCAAAATACGCGCCACCGAACACACCAAG
CTTTTCCAAGCCGCCCTCCAGGTCCGGCAAGGCGTCCTAAAGGACCAGGC
CGACCGAAGAAAGCTCTTTACCCACTCAGCCCGCGGCCCAGCACTAGCCT
ATGATTCTCCCTTGTTTGTCGGACCCGCTCCTCCACCTCGGGTTCATCCT
CCCCCTCCTCCTCCCCCGCAACGGTCGTCACCGCCACCTGTTCCGTTTGA
TGTTGGTGTGGAGGAAGGAAATCGAAATGGGCAATATCAGCAGCAGCAGC
ATCCACGTCCTGAGCAGTACCAACGGTCTTGGCAGCAGCAGCAGCAGCAG
CAGCTGGGGCAGCAGCAAAGTAGATTTCCTCCACCTCCACCTCCACATCG
GTCTCCTCCTCCACCTCGACATGGGCCTTCTCCTTCTCCTCCTCCTCCTT
ATCCTCCTTCATTGTCATCTTTCACTCCACCACCTCCTCCACTTCCATCC
TCCTCCTCCGCCTTGCCCTATCCTCCACCACCCCCTCCTCCACCACCACC
ATTCAACCCCTCTCAACAAAAACACTCCGACGATTTAACTATTCCTCCTT
TCCCTCCTCCACCCCCTCCTCCTGGTTCCGCTCTTACTGGAGCAGGAGGT
CGAGGGAGAGGAGGTGATGGTCCTGACGCGGGTCTTCGCCGGCGATACGC
CCCTCCTCCCTCTTATTCCTCCAGCGGCCGAGGAATGATGATGCCACCGC
ACCACCAGTACCACCACCAGCAGCAGCAGCAGCAGCAGCAGGTTCAAAGA
AAACCTCAGCGAGACACAGCAAGTCGCTTGAAAGACGCAAGGGCCATCGA
AAAAGCCATTGTAGAGCTGGGACAGACGTTCAGTAAGATGGCGGGGCTGG
TGGCGGCTCAGGGGGAAGTGGTGATGAGGATAGACGACGACATGGAAATG
GCCTTGGAAGATGTGCGGAAGGGACACACAGAGATGGAGAATTACTTGAG
GATCGTGCGTGGGAACAGGGCGGTGATTATCAAGGTGTTCGTGGTGCTGA
TTGTATTCATTTTACTTTTTGTCCGATATTTCTAGGGTTTTGTTCGCGAT
TAATCAAATAAAAGTATAAATAGATCAAGCGAAATTTGGTATTCGCATTG
TTGGAT
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protein sequence of NO17G02250.1

>NO17G02250.1-protein ID=NO17G02250.1-protein|Name=NO17G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MDRTREFQGLLKLFGMTDLPVEDEPDDFHHNGSSSTDPSSSTSSFPPHGT
SDFGAAAATVAKEFTSIRRLVHRLQRLVTRKGMHNDPTAEIEDVTAVFKK
DLGRLQGDIESLLRFAEKHYRQGQQRHRHCTCVVEGLKIRATEHTKLFQA
ALQVRQGVLKDQADRRKLFTHSARGPALAYDSPLFVGPAPPPRVHPPPPP
PPQRSSPPPVPFDVGVEEGNRNGQYQQQQHPRPEQYQRSWQQQQQQQLGQ
QQSRFPPPPPPHRSPPPPRHGPSPSPPPPYPPSLSSFTPPPPPLPSSSSA
LPYPPPPPPPPPPFNPSQQKHSDDLTIPPFPPPPPPPGSALTGAGGRGRG
GDGPDAGLRRRYAPPPSYSSSGRGMMMPPHHQYHHQQQQQQQQVQRKPQR
DTASRLKDARAIEKAIVELGQTFSKMAGLVAAQGEVVMRIDDDMEMALED
VRKGHTEMENYLRIVRGNRAVIIKVFVVLIVFILLFVRYF*
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Synonyms
Publications