NO17G02250.1, NO17G02250.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G02250.1
Unique Name	NO17G02250.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1740
Alignment location	chr17:659301..661356 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:659301..661356 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO17G02250.1 vs.
Match: CBN77692.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 95.1 bits (235), Expect = 6.300e-16
Identity = 86/239 (35.98%), Postives = 110/239 (46.03%), Query Frame = 0

Query:    2 DRTREFQGLLKLFGMTDLPVEDEPDDFHHNGSSSTDPSSSTSSFPPHGTSDFGAAAATVAKEFTSIRRLVHRLQRLVTRKGMHNDPTAEIEDVTAVFKKDLGRLQGDIESLLRFAEKHYR----QGQQRHRHCTCVVEGLKIRATEHTKLFQAALQVRQGVLKDQADRRKLFTHSARG--PALAYDSPLFVGPA-----------PPPRVHPPPPPPPQRSSPPPVPFDVGVEEGNRNG 224
            DRT EFQG +  F  T   V         N S       + +      TS+F   AA+VA  F    RL+ RL++LV RKG  N+P AEI DV  +F+ D+  LQ DI SL R A+   R       QR  HC  +V  L+  A EHTK F+ AL +R  V K Q +R++ F+HS RG  PA   D P F   A           P   +  PP P P          + G + G R G
Sbjct:    5 DRTEEFQGAVSAFRPTVTVV---------NNSGEAAAIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLKKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDISSLQRHADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALLLRAAVEKQQNERQRKFSHS-RGVAPATQLDYPFFGSSAGGAGGGARRRRPTANLPSPPSPAPDEDDED----NKGHKHGPRRG 229

The following BLAST results are available for this feature:

BLAST of NO17G02250.1 vs.

BLAST of NO17G02250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN77692.1	6.300e-16	35.98	Soluble NSF Attachment Protein (SNAP) Receptor (SN...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G02250	NO17G02250	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02250.1	NO17G02250.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G02250.1.cds1	NO17G02250.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02250.1.cds2	NO17G02250.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G02250.1.cds3	NO17G02250.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:659301..661356-
coding sequence from alignment at chr17:659301..661356-

mRNA sequence

>NO17G02250.1 ID=NO17G02250.1|Name=NO17G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1740bp
ACAGGACAACTAAGCCGGCCAATACAGAGCTTGGTCCACGCAGCCAAGCC
GCTTGTCTTTCTCCCCCCTCGCCCGTTGTTGTTTTGGCGATAAGCTACTA
ACGCAACGCACACAAGCACTCAAGCACTAGTGCTTAGCACTCAAGCAGCA
CAAACTCCCACCACCCACGATCAGGGCCCCCAGTCCAGCCGTGGTCATGG
ACCGCACTCGCGAGTTTCAGGGCCTCCTCAAACTATTTGGCATGACAGAT
TTGCCCGTCGAGGACGAGCCCGACGACTTCCACCACAACGGCTCCTCCTC
CACTGACCCCTCCTCCTCCACTTCCTCCTTCCCTCCGCATGGCACTTCTG
ACTTCGGGGCTGCGGCCGCTACAGTTGCCAAGGAGTTCACGAGTATTCGG
AGACTTGTCCATCGGTTACAGCGTTTGGTGACACGAAAAGGCATGCACAA
TGACCCCACCGCGGAGATAGAAGACGTGACGGCGGTCTTTAAGAAGGACC
TGGGGAGATTGCAAGGGGACATTGAGAGCTTACTGCGGTTCGCGGAAAAA
CACTATCGGCAAGGCCAACAACGCCACCGACACTGCACCTGTGTCGTTGA
AGGCCTCAAAATACGCGCCACCGAACACACCAAGCTTTTCCAAGCCGCCC
TCCAGGTCCGGCAAGGCGTCCTAAAGGACCAGGCCGACCGAAGAAAGCTC
TTTACCCACTCAGCCCGCGGCCCAGCACTAGCCTATGATTCTCCCTTGTT
TGTCGGACCCGCTCCTCCACCTCGGGTTCATCCTCCCCCTCCTCCTCCCC
CGCAACGGTCGTCACCGCCACCTGTTCCGTTTGATGTTGGTGTGGAGGAA
GGAAATCGAAATGGGCAATATCAGCAGCAGCAGCATCCACGTCCTGAGCA
GTACCAACGGTCTTGGCAGCAGCAGCAGCAGCAGCAGCTGGGGCAGCAGC
AAAGTAGATTTCCTCCACCTCCACCTCCACATCGGTCTCCTCCTCCACCT
CGACATGGGCCTTCTCCTTCTCCTCCTCCTCCTTATCCTCCTTCATTGTC
ATCTTTCACTCCACCACCTCCTCCACTTCCATCCTCCTCCTCCGCCTTGC
CCTATCCTCCACCACCCCCTCCTCCACCACCACCATTCAACCCCTCTCAA
CAAAAACACTCCGACGATTTAACTATTCCTCCTTTCCCTCCTCCACCCCC
TCCTCCTGGTTCCGCTCTTACTGGAGCAGGAGGTCGAGGGAGAGGAGGTG
ATGGTCCTGACGCGGGTCTTCGCCGGCGATACGCCCCTCCTCCCTCTTAT
TCCTCCAGCGGCCGAGGAATGATGATGCCACCGCACCACCAGTACCACCA
CCAGCAGCAGCAGCAGCAGCAGCAGGTTCAAAGAAAACCTCAGCGAGACA
CAGCAAGTCGCTTGAAAGACGCAAGGGCCATCGAAAAAGCCATTGTAGAG
CTGGGACAGACGTTCAGTAAGATGGCGGGGCTGGTGGCGGCTCAGGGGGA
AGTGGTGATGAGGATAGACGACGACATGGAAATGGCCTTGGAAGATGTGC
GGAAGGGACACACAGAGATGGAGAATTACTTGAGGATCGTGCGTGGGAAC
AGGGCGGTGATTATCAAGGTGTTCGTGGTGCTGATTGTATTCATTTTACT
TTTTGTCCGATATTTCTAGGGTTTTGTTCGCGATTAATCAAATAAAAGTA
TAAATAGATCAAGCGAAATTTGGTATTCGCATTGTTGGAT

protein sequence of NO17G02250.1

>NO17G02250.1-protein ID=NO17G02250.1-protein|Name=NO17G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MDRTREFQGLLKLFGMTDLPVEDEPDDFHHNGSSSTDPSSSTSSFPPHGT
SDFGAAAATVAKEFTSIRRLVHRLQRLVTRKGMHNDPTAEIEDVTAVFKK
DLGRLQGDIESLLRFAEKHYRQGQQRHRHCTCVVEGLKIRATEHTKLFQA
ALQVRQGVLKDQADRRKLFTHSARGPALAYDSPLFVGPAPPPRVHPPPPP
PPQRSSPPPVPFDVGVEEGNRNGQYQQQQHPRPEQYQRSWQQQQQQQLGQ
QQSRFPPPPPPHRSPPPPRHGPSPSPPPPYPPSLSSFTPPPPPLPSSSSA
LPYPPPPPPPPPPFNPSQQKHSDDLTIPPFPPPPPPPGSALTGAGGRGRG
GDGPDAGLRRRYAPPPSYSSSGRGMMMPPHHQYHHQQQQQQQQVQRKPQR
DTASRLKDARAIEKAIVELGQTFSKMAGLVAAQGEVVMRIDDDMEMALED
VRKGHTEMENYLRIVRGNRAVIIKVFVVLIVFILLFVRYF*

mRNA from alignment at chr17:659301..661356-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G02250.1 ID=NO17G02250.1|Name=NO17G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2056bp|location=Sequence derived from alignment at chr17:659301..661356- (Nannochloropsis oceanica)
ACAGGACAACTAAGCCGGCCAATACAGAGCTTGGTCCACGCAGCCAAGCC
GCTTGTCTTTCTCCCCCCTCGCCCGTTGTTGTTTTGGCGATAAGCTACTA
ACGCAACGCACACAAGCACTCAAGCACTAGTGCTTAGCACTCAAGCAGCA
CAAACTCCCACCACCCACGATCAGGGCCCCCAGTCCAGCCGTGGTCATGG
ACCGCACTCGCGAGTTTCAGGGCCTCCTCAAACTATTTGGCATGACAGAT
TTGCCCGTCGAGGTACGTTTGGGTATATAAGGGGGACAAGGTGGGGCATG
AGTAGCTTGTGTGTGATGGTTGTGCGGGGCTTCGCCGCTGTACTTCCCCC
ATTTTCACTTTATCCCTGTGCAGTTTCAGTAATTCCGCCAGTCGTGCAGC
CCGAATGGAAATTGTGCCCTCTTCTCCCATCTTCATTGTCTCGATCCAAT
TCCTCCCCTCCCTCCCTCCCTTCAGGACGAGCCCGACGACTTCCACCACA
ACGGCTCCTCCTCCACTGACCCCTCCTCCTCCACTTCCTCCTTCCCTCCG
CATGGCACTTCTGACTTCGGGGCTGCGGCCGCTACAGTTGCCAAGGAGTT
CACGAGTATTCGGAGACTTGTCCATCGGTTACAGCGTTTGGTGACACGAA
AAGGCATGCACAATGACCCCACCGCGGAGATAGAAGACGTGACGGCGGTC
TTTAAGAAGGACCTGGGGAGATTGCAAGGGGACATTGAGAGCTTACTGCG
GTTCGCGGAAAAACACTATCGGTAGGGAAGGAGGGAAGGAGGAAGGGAGG
GAGCCAGGACGGGCTGGAGAGCACACATGAGATTGCTTGCCTTGTTTCTA
TTCAATCAGATGCACATAATACAGGCAAGGCCAACAACGCCACCGACACT
GCACCTGTGTCGTTGAAGGCCTCAAAATACGCGCCACCGAACACACCAAG
CTTTTCCAAGCCGCCCTCCAGGTCCGGCAAGGCGTCCTAAAGGACCAGGC
CGACCGAAGAAAGCTCTTTACCCACTCAGCCCGCGGCCCAGCACTAGCCT
ATGATTCTCCCTTGTTTGTCGGACCCGCTCCTCCACCTCGGGTTCATCCT
CCCCCTCCTCCTCCCCCGCAACGGTCGTCACCGCCACCTGTTCCGTTTGA
TGTTGGTGTGGAGGAAGGAAATCGAAATGGGCAATATCAGCAGCAGCAGC
ATCCACGTCCTGAGCAGTACCAACGGTCTTGGCAGCAGCAGCAGCAGCAG
CAGCTGGGGCAGCAGCAAAGTAGATTTCCTCCACCTCCACCTCCACATCG
GTCTCCTCCTCCACCTCGACATGGGCCTTCTCCTTCTCCTCCTCCTCCTT
ATCCTCCTTCATTGTCATCTTTCACTCCACCACCTCCTCCACTTCCATCC
TCCTCCTCCGCCTTGCCCTATCCTCCACCACCCCCTCCTCCACCACCACC
ATTCAACCCCTCTCAACAAAAACACTCCGACGATTTAACTATTCCTCCTT
TCCCTCCTCCACCCCCTCCTCCTGGTTCCGCTCTTACTGGAGCAGGAGGT
CGAGGGAGAGGAGGTGATGGTCCTGACGCGGGTCTTCGCCGGCGATACGC
CCCTCCTCCCTCTTATTCCTCCAGCGGCCGAGGAATGATGATGCCACCGC
ACCACCAGTACCACCACCAGCAGCAGCAGCAGCAGCAGCAGGTTCAAAGA
AAACCTCAGCGAGACACAGCAAGTCGCTTGAAAGACGCAAGGGCCATCGA
AAAAGCCATTGTAGAGCTGGGACAGACGTTCAGTAAGATGGCGGGGCTGG
TGGCGGCTCAGGGGGAAGTGGTGATGAGGATAGACGACGACATGGAAATG
GCCTTGGAAGATGTGCGGAAGGGACACACAGAGATGGAGAATTACTTGAG
GATCGTGCGTGGGAACAGGGCGGTGATTATCAAGGTGTTCGTGGTGCTGA
TTGTATTCATTTTACTTTTTGTCCGATATTTCTAGGGTTTTGTTCGCGAT
TAATCAAATAAAAGTATAAATAGATCAAGCGAAATTTGGTATTCGCATTG
TTGGAT

Coding sequence (CDS) from alignment at chr17:659301..661356-

>NO17G02250.1 ID=NO17G02250.1|Name=NO17G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr17:659301..661356- (Nannochloropsis oceanica)
ATGGACCGCACTCGCGAGTTTCAGGGCCTCCTCAAACTATTTGGCATGAC
AGATTTGCCCGTCGAGGACGAGCCCGACGACTTCCACCACAACGGCTCCT
CCTCCACTGACCCCTCCTCCTCCACTTCCTCCTTCCCTCCGCATGGCACT
TCTGACTTCGGGGCTGCGGCCGCTACAGTTGCCAAGGAGTTCACGAGTAT
TCGGAGACTTGTCCATCGGTTACAGCGTTTGGTGACACGAAAAGGCATGC
ACAATGACCCCACCGCGGAGATAGAAGACGTGACGGCGGTCTTTAAGAAG
GACCTGGGGAGATTGCAAGGGGACATTGAGAGCTTACTGCGGTTCGCGGA
AAAACACTATCGGCAAGGCCAACAACGCCACCGACACTGCACCTGTGTCG
TTGAAGGCCTCAAAATACGCGCCACCGAACACACCAAGCTTTTCCAAGCC
GCCCTCCAGGTCCGGCAAGGCGTCCTAAAGGACCAGGCCGACCGAAGAAA
GCTCTTTACCCACTCAGCCCGCGGCCCAGCACTAGCCTATGATTCTCCCT
TGTTTGTCGGACCCGCTCCTCCACCTCGGGTTCATCCTCCCCCTCCTCCT
CCCCCGCAACGGTCGTCACCGCCACCTGTTCCGTTTGATGTTGGTGTGGA
GGAAGGAAATCGAAATGGGCAATATCAGCAGCAGCAGCATCCACGTCCTG
AGCAGTACCAACGGTCTTGGCAGCAGCAGCAGCAGCAGCAGCTGGGGCAG
CAGCAAAGTAGATTTCCTCCACCTCCACCTCCACATCGGTCTCCTCCTCC
ACCTCGACATGGGCCTTCTCCTTCTCCTCCTCCTCCTTATCCTCCTTCAT
TGTCATCTTTCACTCCACCACCTCCTCCACTTCCATCCTCCTCCTCCGCC
TTGCCCTATCCTCCACCACCCCCTCCTCCACCACCACCATTCAACCCCTC
TCAACAAAAACACTCCGACGATTTAACTATTCCTCCTTTCCCTCCTCCAC
CCCCTCCTCCTGGTTCCGCTCTTACTGGAGCAGGAGGTCGAGGGAGAGGA
GGTGATGGTCCTGACGCGGGTCTTCGCCGGCGATACGCCCCTCCTCCCTC
TTATTCCTCCAGCGGCCGAGGAATGATGATGCCACCGCACCACCAGTACC
ACCACCAGCAGCAGCAGCAGCAGCAGCAGGTTCAAAGAAAACCTCAGCGA
GACACAGCAAGTCGCTTGAAAGACGCAAGGGCCATCGAAAAAGCCATTGT
AGAGCTGGGACAGACGTTCAGTAAGATGGCGGGGCTGGTGGCGGCTCAGG
GGGAAGTGGTGATGAGGATAGACGACGACATGGAAATGGCCTTGGAAGAT
GTGCGGAAGGGACACACAGAGATGGAGAATTACTTGAGGATCGTGCGTGG
GAACAGGGCGGTGATTATCAAGGTGTTCGTGGTGCTGATTGTATTCATTT
TACTTTTTGTCCGATATTTCTAG

Synonyms

Publications