NO17G00860, NO17G00860 (gene) Nannochloropsis oceanica

Overview
NameNO17G00860
Unique NameNO17G00860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1846
Alignment locationchr17:283235..285080 +

Link to JBrowse

Properties
Property NameValue
DescriptionProteasome-associated protein ecm29
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:283235..285080 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0032947protein-containing complex scaffold activity
Vocabulary: Biological Process
TermDefinition
GO:0043248proteasome assembly
GO:0043248proteasome assembly
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR024372Proteasome_stabil_ECM29
Vocabulary: Cellular Component
TermDefinition
GO:0000502proteasome complex
Homology
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BLAST of NO17G00860 vs. NCBI_GenBank
Match: EWM21118.1 (proteasome-associated protein ecm29 [Nannochloropsis gaditana])

HSP 1 Score: 133.7 bits (335), Expect = 1.700e-27
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = 0 
Query:    1 MEGCVALGKGGGNTARVLGIELCMEVEKGLRSSSWGGRRAALLALVDLTGSLGKGGLKEHAFKMLSNLFEMVPGRLWEGKESVLKALVQVVGVCPEILME 101
            MEGC ALGKGGGNT + LG ELC EVE+ LRSSSW GRRAAL AL  L+  LG+GGL+ HA +++  L +++PGRLWEGK+ VL+ALV+VV  CP +L E
Sbjct:  704 MEGCAALGKGGGNTTKALGDELCTEVERELRSSSWSGRRAALKALASLSEGLGRGGLRLHARRLVGELLDLLPGRLWEGKDEVLRALVKVVVACPGLLRE 803
The following BLAST results are available for this feature:
BLAST of NO17G00860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21118.11.700e-2763.00proteasome-associated protein ecm29 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004807NSK004807Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00860.1NO17G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00860.1NO17G00860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00860 ID=NO17G00860|Name=NO17G00860|organism=Nannochloropsis oceanica|type=gene|length=1846bp
ATGGAGGGATGCGTGGCATTGGGGAAGGGGGGAGGGAATACGGCACGTGT
GCTAGGGATAGAGCTCTGCATGGAAGTAGAGAAGGGGCTCAGGTCGTCGT
CATGGGGGGGGAGGAGGGCGGCGTTGCTTGCTTTGGTTGATTTGACGGGG
AGCTTGGGAAAGGGGGGATTGAAGGAACATGCATTTAAAATGTTGAGTAA
TTTGTTTGAGATGGTGCCGGGGCGGTTGTGGGAGGGGAAGGAGAGTGTGC
TTAAGGCGTTGGTGCAGGTGGTAGGTGTTTGCCCAGAGATCTTGATGGAG
GGAGGGGGGGAGGAGGGGTGGCTGTGGTGGGAGGAGGGGGGAGATGGAGG
GGAGGATTTTTTTTGGTTCCCGGCGGGATTATTGAGGAGTGGAGAGGGGG
GAGAGATGGTGGTGGTGGTGATGGAGGAGGAAGAGAGAGAGAAAGAGGGA
GAGGGGGGCGGGGAGGGAGGGGCAGTGACAGAGGGACCGGCGGTGGAGGG
GGAAGGGACGGAGCAAAGGGACGAGAATGCGTTTGCACGGTTGGATTCCG
AGGAAGAGGGTGGTGGTGATGGGCCCGAGAATGGCAGCAGCAGCAGCAGC
AGCACTGGCAGCAGCAGCAGTTGCAGTAAAAAGAGCAGTTTGATGGAGGT
GGCGGAAGACAACGCTGTCAAAGCAATAACTACTCCTGTTGTTGTAAGCA
GCAACAGCAGCACCAACCCCAACCCCAACACCAACACCGGTACCCGCAAG
CTTTCTTATCGCGGCCTCGTCCGCGTGTTGGTAGAGCAATGCCATCGTTC
CCACCGTGACTATCGACGGGCCGCCGTTCAGTGCCTGATGGACCTTGCCG
TGGCGCTCCCCCAATTTAATGTCCTGGAAATGACGCAGGAAACATTGATT
AAGATGGCGGGAGGGATAGAACTGATGAGTGGAGGAGGTGGTGGAGAAAG
AGGAGAAGGTAGAGAGGGTGTAGAGGGAGGGGAAGTGGACCACGTGCTGA
GGGCGTGGGCGGTGGAGGCGCTTGGGACTTTTTTCCCCTCCTGTGTTGTT
GCAACCGCTGCAATTGCTGCTACTGCGGGAGCTGCTCCTACTGCTGAGGC
CTATAATGTATCTGTCTACAACACGCAAAAAGATGCGCTTGGATGGCTAC
TCCGCATGCTGTTGTCTCGTGCGACCTACTCCGTGTGGAGCCTCCGTCGA
GCAGTTTACAAGGCCTTGCGGTTGATAATGCAACGTATCTACGTCCGCCC
CGATGCTGACAGCCGCACCGACACCTGCATAAGTACTCCAGCGCAGCAGC
AGCAGCGGCTTCCACCCAGTTTGCTCACCGGTGCAACTATTGAGAAGGTC
ATCTCGGCTTCTCTGAAGGGGATTGAAGATGCGAAATACCACCAAATAAG
AGAGGTGGCTACTGACGTGCTTCTTTCTTTGATCAAGCGTCCAGAGATGG
AAGTACGTGTGGCACTCATCCCGCAGTCAGAACGAATGGCGATGACCTTG
GAAAAGGTCGTCATGGACAGCAATCCGGGGGTGGTACGTTTGGCAATGGA
GGCCAAGGCGTTGTTGCATGGGTTGGGGGGATAAATTAGTGAGGAGCAGA
CAAGGGAGGAGGTTGATAATGTCTTTCTTTGGGGGGTAGAACAGGAAAGG
GAGGGGAGGGAGAATGTGTGTGTACAAAGGGATGAAAAATACTCGAGGAG
GTGTAGCTAGAAAGGAAGCGAAGAGAGGAAGCATCTAAAAAAGAAAGATG
GAGGGTATGTGAGATTCTCCACGAACATCCAAGTTTCCCTTGATCCTTTT
TATACATGAAGGCCATGAAAAACGTCACCACTTACTGTACAAGGTC
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protein sequence of NO17G00860.1

>NO17G00860.1-protein ID=NO17G00860.1-protein|Name=NO17G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=528bp
MEGCVALGKGGGNTARVLGIELCMEVEKGLRSSSWGGRRAALLALVDLTG
SLGKGGLKEHAFKMLSNLFEMVPGRLWEGKESVLKALVQVVGVCPEILME
GGGEEGWLWWEEGGDGGEDFFWFPAGLLRSGEGGEMVVVVMEEEEREKEG
EGGGEGGAVTEGPAVEGEGTEQRDENAFARLDSEEEGGGDGPENGSSSSS
STGSSSSCSKKSSLMEVAEDNAVKAITTPVVVSSNSSTNPNPNTNTGTRK
LSYRGLVRVLVEQCHRSHRDYRRAAVQCLMDLAVALPQFNVLEMTQETLI
KMAGGIELMSGGGGGERGEGREGVEGGEVDHVLRAWAVEALGTFFPSCVV
ATAAIAATAGAAPTAEAYNVSVYNTQKDALGWLLRMLLSRATYSVWSLRR
AVYKALRLIMQRIYVRPDADSRTDTCISTPAQQQQRLPPSLLTGATIEKV
ISASLKGIEDAKYHQIREVATDVLLSLIKRPEMEVRVALIPQSERMAMTL
EKVVMDSNPGVVRLAMEAKALLHGLGG*
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Synonyms
Publications