NO17G00860.1, NO17G00860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00860.1
Unique NameNO17G00860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1846
Alignment locationchr17:283235..285080 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:283235..285080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO17G00860.1 vs.
Match: EWM21118.1 (proteasome-associated protein ecm29 [Nannochloropsis gaditana])

HSP 1 Score: 141.7 bits (356), Expect = 6.300e-30
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 0 
Query:    1 MEGCVALGKGGGNTARVLGIELCMEVEKGLRSSSWGGRRAALLALVDLTGSLGKGGLKEHAFKMLSNLFEMVPGRLWEGKESVLKALVQVVGVCPEILME-GGGEEGWLWWEEGGDGGE 119
            MEGC ALGKGGGNT + LG ELC EVE+ LRSSSW GRRAAL AL  L+  LG+GGL+ HA +++  L +++PGRLWEGK+ VL+ALV+VV  CP +L E GGG++G      GG  GE
Sbjct:  704 MEGCAALGKGGGNTTKALGDELCTEVERELRSSSWSGRRAALKALASLSEGLGRGGLRLHARRLVGELLDLLPGRLWEGKDEVLRALVKVVVACPGLLREGGGGKDGCSGRSRGGGQGE 822
The following BLAST results are available for this feature:
BLAST of NO17G00860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21118.16.300e-3059.66proteasome-associated protein ecm29 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00860NO17G00860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00860.1NO17G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00860.1.cds1NO17G00860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00860.1 ID=NO17G00860.1|Name=NO17G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp
ATGGAGGGATGCGTGGCATTGGGGAAGGGGGGAGGGAATACGGCACGTGT
GCTAGGGATAGAGCTCTGCATGGAAGTAGAGAAGGGGCTCAGGTCGTCGT
CATGGGGGGGGAGGAGGGCGGCGTTGCTTGCTTTGGTTGATTTGACGGGG
AGCTTGGGAAAGGGGGGATTGAAGGAACATGCATTTAAAATGTTGAGTAA
TTTGTTTGAGATGGTGCCGGGGCGGTTGTGGGAGGGGAAGGAGAGTGTGC
TTAAGGCGTTGGTGCAGGTGGTAGGTGTTTGCCCAGAGATCTTGATGGAG
GGAGGGGGGGAGGAGGGGTGGCTGTGGTGGGAGGAGGGGGGAGATGGAGG
GGAGGATTTTTTTTGGTTCCCGGCGGGATTATTGAGGAGTGGAGAGGGGG
GAGAGATGGTGGTGGTGGTGATGGAGGAGGAAGAGAGAGAGAAAGAGGGA
GAGGGGGGCGGGGAGGGAGGGGCAGTGACAGAGGGACCGGCGGTGGAGGG
GGAAGGGACGGAGCAAAGGGACGAGAATGCGTTTGCACGGTTGGATTCCG
AGGAAGAGGGTGGTGGTGATGGGCCCGAGAATGGCAGCAGCAGCAGCAGC
AGCACTGGCAGCAGCAGCAGTTGCAGTAAAAAGAGCAGTTTGATGGAGGT
GGCGGAAGACAACGCTGTCAAAGCAATAACTACTCCTGTTGTTGTAAGCA
GCAACAGCAGCACCAACCCCAACCCCAACACCAACACCGGTACCCGCAAG
CTTTCTTATCGCGGCCTCGTCCGCGTGTTGGTAGAGCAATGCCATCGTTC
CCACCGTGACTATCGACGGGCCGCCGTTCAGTGCCTGATGGACCTTGCCG
TGGCGCTCCCCCAATTTAATGTCCTGGAAATGACGCAGGAAACATTGATT
AAGATGGCGGGAGGGATAGAACTGATGAGTGGAGGAGGTGGTGGAGAAAG
AGGAGAAGGTAGAGAGGGTGTAGAGGGAGGGGAAGTGGACCACGTGCTGA
GGGCGTGGGCGGTGGAGGCGCTTGGGACTTTTTTCCCCTCCTGTGTTGTT
GCAACCGCTGCAATTGCTGCTACTGCGGGAGCTGCTCCTACTGCTGAGGC
CTATAATGTATCTGTCTACAACACGCAAAAAGATGCGCTTGGATGGCTAC
TCCGCATGCTGTTGTCTCGTGCGACCTACTCCGTGTGGAGCCTCCGTCGA
GCAGTTTACAAGGCCTTGCGGTTGATAATGCAACGTATCTACGTCCGCCC
CGATGCTGACAGCCGCACCGACACCTGCATAAGTACTCCAGCGCAGCAGC
AGCAGCGGCTTCCACCCAGTTTGCTCACCGGTGCAACTATTGAGAAGGTC
ATCTCGGCTTCTCTGAAGGGGATTGAAGATGCGAAATACCACCAAATAAG
AGAGGTGGCTACTGACGTGCTTCTTTCTTTGATCAAGCGTCCAGAGATGG
AAGTACGTGTGGCACTCATCCCGCAGTCAGAACGAATGGCGATGACCTTG
GAAAAGGTCGTCATGGACAGCAATCCGGGGGTGGTACGTTTGGCAATGGA
GGCCAAGGCGTTGTTGCATGGGTTGGGGGGATAAATTAGTGAGGAGCAGA
CAAGGGAGGAGGTTGATAATGTCTTTCTTTGGGGGGTAGAACAGGAAAGG
GAGGGGAGGGAGAATGTGTGTGTACAAAGGGATGAAAAATACTCGAGGAG
GTGTAGCTAGAAAGGAAGCGAAGAGAGGAAGCATCTAAAAAAGAAAGATG
GAGGGTATGTGAGATTCTCCACGAACATCCAAGTTTCCCTTGATCCTTTT
TATACATGAAGGCCATGAAAAACGTCACCACTTACTGTACAAGGTC
back to top

protein sequence of NO17G00860.1

>NO17G00860.1-protein ID=NO17G00860.1-protein|Name=NO17G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=528bp
MEGCVALGKGGGNTARVLGIELCMEVEKGLRSSSWGGRRAALLALVDLTG
SLGKGGLKEHAFKMLSNLFEMVPGRLWEGKESVLKALVQVVGVCPEILME
GGGEEGWLWWEEGGDGGEDFFWFPAGLLRSGEGGEMVVVVMEEEEREKEG
EGGGEGGAVTEGPAVEGEGTEQRDENAFARLDSEEEGGGDGPENGSSSSS
STGSSSSCSKKSSLMEVAEDNAVKAITTPVVVSSNSSTNPNPNTNTGTRK
LSYRGLVRVLVEQCHRSHRDYRRAAVQCLMDLAVALPQFNVLEMTQETLI
KMAGGIELMSGGGGGERGEGREGVEGGEVDHVLRAWAVEALGTFFPSCVV
ATAAIAATAGAAPTAEAYNVSVYNTQKDALGWLLRMLLSRATYSVWSLRR
AVYKALRLIMQRIYVRPDADSRTDTCISTPAQQQQRLPPSLLTGATIEKV
ISASLKGIEDAKYHQIREVATDVLLSLIKRPEMEVRVALIPQSERMAMTL
EKVVMDSNPGVVRLAMEAKALLHGLGG*
back to top

mRNA from alignment at chr17:283235..285080+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00860.1 ID=NO17G00860.1|Name=NO17G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp|location=Sequence derived from alignment at chr17:283235..285080+ (Nannochloropsis oceanica)
ATGGAGGGATGCGTGGCATTGGGGAAGGGGGGAGGGAATACGGCACGTGT
GCTAGGGATAGAGCTCTGCATGGAAGTAGAGAAGGGGCTCAGGTCGTCGT
CATGGGGGGGGAGGAGGGCGGCGTTGCTTGCTTTGGTTGATTTGACGGGG
AGCTTGGGAAAGGGGGGATTGAAGGAACATGCATTTAAAATGTTGAGTAA
TTTGTTTGAGATGGTGCCGGGGCGGTTGTGGGAGGGGAAGGAGAGTGTGC
TTAAGGCGTTGGTGCAGGTGGTAGGTGTTTGCCCAGAGATCTTGATGGAG
GGAGGGGGGGAGGAGGGGTGGCTGTGGTGGGAGGAGGGGGGAGATGGAGG
GGAGGATTTTTTTTGGTTCCCGGCGGGATTATTGAGGAGTGGAGAGGGGG
GAGAGATGGTGGTGGTGGTGATGGAGGAGGAAGAGAGAGAGAAAGAGGGA
GAGGGGGGCGGGGAGGGAGGGGCAGTGACAGAGGGACCGGCGGTGGAGGG
GGAAGGGACGGAGCAAAGGGACGAGAATGCGTTTGCACGGTTGGATTCCG
AGGAAGAGGGTGGTGGTGATGGGCCCGAGAATGGCAGCAGCAGCAGCAGC
AGCACTGGCAGCAGCAGCAGTTGCAGTAAAAAGAGCAGTTTGATGGAGGT
GGCGGAAGACAACGCTGTCAAAGCAATAACTACTCCTGTTGTTGTAAGCA
GCAACAGCAGCACCAACCCCAACCCCAACACCAACACCGGTACCCGCAAG
CTTTCTTATCGCGGCCTCGTCCGCGTGTTGGTAGAGCAATGCCATCGTTC
CCACCGTGACTATCGACGGGCCGCCGTTCAGTGCCTGATGGACCTTGCCG
TGGCGCTCCCCCAATTTAATGTCCTGGAAATGACGCAGGAAACATTGATT
AAGATGGCGGGAGGGATAGAACTGATGAGTGGAGGAGGTGGTGGAGAAAG
AGGAGAAGGTAGAGAGGGTGTAGAGGGAGGGGAAGTGGACCACGTGCTGA
GGGCGTGGGCGGTGGAGGCGCTTGGGACTTTTTTCCCCTCCTGTGTTGTT
GCAACCGCTGCAATTGCTGCTACTGCGGGAGCTGCTCCTACTGCTGAGGC
CTATAATGTATCTGTCTACAACACGCAAAAAGATGCGCTTGGATGGCTAC
TCCGCATGCTGTTGTCTCGTGCGACCTACTCCGTGTGGAGCCTCCGTCGA
GCAGTTTACAAGGCCTTGCGGTTGATAATGCAACGTATCTACGTCCGCCC
CGATGCTGACAGCCGCACCGACACCTGCATAAGTACTCCAGCGCAGCAGC
AGCAGCGGCTTCCACCCAGTTTGCTCACCGGTGCAACTATTGAGAAGGTC
ATCTCGGCTTCTCTGAAGGGGATTGAAGATGCGAAATACCACCAAATAAG
AGAGGTGGCTACTGACGTGCTTCTTTCTTTGATCAAGCGTCCAGAGATGG
AAGTACGTGTGGCACTCATCCCGCAGTCAGAACGAATGGCGATGACCTTG
GAAAAGGTCGTCATGGACAGCAATCCGGGGGTGGTACGTTTGGCAATGGA
GGCCAAGGCGTTGTTGCATGGGTTGGGGGGATAAATTAGTGAGGAGCAGA
CAAGGGAGGAGGTTGATAATGTCTTTCTTTGGGGGGTAGAACAGGAAAGG
GAGGGGAGGGAGAATGTGTGTGTACAAAGGGATGAAAAATACTCGAGGAG
GTGTAGCTAGAAAGGAAGCGAAGAGAGGAAGCATCTAAAAAAGAAAGATG
GAGGGTATGTGAGATTCTCCACGAACATCCAAGTTTCCCTTGATCCTTTT
TATACATGAAGGCCATGAAAAACGTCACCACTTACTGTACAAGGTC
back to top

Coding sequence (CDS) from alignment at chr17:283235..285080+

>NO17G00860.1 ID=NO17G00860.1|Name=NO17G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at chr17:283235..285080+ (Nannochloropsis oceanica)
ATGGAGGGATGCGTGGCATTGGGGAAGGGGGGAGGGAATACGGCACGTGT
GCTAGGGATAGAGCTCTGCATGGAAGTAGAGAAGGGGCTCAGGTCGTCGT
CATGGGGGGGGAGGAGGGCGGCGTTGCTTGCTTTGGTTGATTTGACGGGG
AGCTTGGGAAAGGGGGGATTGAAGGAACATGCATTTAAAATGTTGAGTAA
TTTGTTTGAGATGGTGCCGGGGCGGTTGTGGGAGGGGAAGGAGAGTGTGC
TTAAGGCGTTGGTGCAGGTGGTAGGTGTTTGCCCAGAGATCTTGATGGAG
GGAGGGGGGGAGGAGGGGTGGCTGTGGTGGGAGGAGGGGGGAGATGGAGG
GGAGGATTTTTTTTGGTTCCCGGCGGGATTATTGAGGAGTGGAGAGGGGG
GAGAGATGGTGGTGGTGGTGATGGAGGAGGAAGAGAGAGAGAAAGAGGGA
GAGGGGGGCGGGGAGGGAGGGGCAGTGACAGAGGGACCGGCGGTGGAGGG
GGAAGGGACGGAGCAAAGGGACGAGAATGCGTTTGCACGGTTGGATTCCG
AGGAAGAGGGTGGTGGTGATGGGCCCGAGAATGGCAGCAGCAGCAGCAGC
AGCACTGGCAGCAGCAGCAGTTGCAGTAAAAAGAGCAGTTTGATGGAGGT
GGCGGAAGACAACGCTGTCAAAGCAATAACTACTCCTGTTGTTGTAAGCA
GCAACAGCAGCACCAACCCCAACCCCAACACCAACACCGGTACCCGCAAG
CTTTCTTATCGCGGCCTCGTCCGCGTGTTGGTAGAGCAATGCCATCGTTC
CCACCGTGACTATCGACGGGCCGCCGTTCAGTGCCTGATGGACCTTGCCG
TGGCGCTCCCCCAATTTAATGTCCTGGAAATGACGCAGGAAACATTGATT
AAGATGGCGGGAGGGATAGAACTGATGAGTGGAGGAGGTGGTGGAGAAAG
AGGAGAAGGTAGAGAGGGTGTAGAGGGAGGGGAAGTGGACCACGTGCTGA
GGGCGTGGGCGGTGGAGGCGCTTGGGACTTTTTTCCCCTCCTGTGTTGTT
GCAACCGCTGCAATTGCTGCTACTGCGGGAGCTGCTCCTACTGCTGAGGC
CTATAATGTATCTGTCTACAACACGCAAAAAGATGCGCTTGGATGGCTAC
TCCGCATGCTGTTGTCTCGTGCGACCTACTCCGTGTGGAGCCTCCGTCGA
GCAGTTTACAAGGCCTTGCGGTTGATAATGCAACGTATCTACGTCCGCCC
CGATGCTGACAGCCGCACCGACACCTGCATAAGTACTCCAGCGCAGCAGC
AGCAGCGGCTTCCACCCAGTTTGCTCACCGGTGCAACTATTGAGAAGGTC
ATCTCGGCTTCTCTGAAGGGGATTGAAGATGCGAAATACCACCAAATAAG
AGAGGTGGCTACTGACGTGCTTCTTTCTTTGATCAAGCGTCCAGAGATGG
AAGTACGTGTGGCACTCATCCCGCAGTCAGAACGAATGGCGATGACCTTG
GAAAAGGTCGTCATGGACAGCAATCCGGGGGTGGTACGTTTGGCAATGGA
GGCCAAGGCGTTGTTGCATGGGTTGGGGGGATAA
back to top
Synonyms
Publications