NO17G00590, NO17G00590 (gene) Nannochloropsis oceanica

Overview
NameNO17G00590
Unique NameNO17G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1747
Alignment locationchr17:212722..214468 +

Link to JBrowse

Properties
Property NameValue
Description40S ribosomal protein SA
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:212722..214468 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
GO:0005829cytosol
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0016043cellular component organization
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR023591Ribosomal_S2_flav_dom
IPR005707Ribosomal_S2_euk/arc
IPR001865Ribosomal_S2
Homology
BLAST of NO17G00590 vs. NCBI_GenBank
Match: EWM21169.1 (40s ribosomal protein s0 [Nannochloropsis gaditana])

HSP 1 Score: 490.0 bits (1260), Expect = 5.100e-135
Identity = 246/287 (85.71%), Postives = 264/287 (91.99%), Query Frame = 0
Query:    1 MTQIDVPKALQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYVLNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFADSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVPVDLFFYREPDEIEKEEDKPAAFATEPEMPDAAPVAPGVDDFGVVG-AGVVPSYGEPVSASWDGA-AAPVDQAGASSWEQPTESGWTN 286
            MTQIDVPKALQPTDQD+HKLV+ASVHIGTKNSDKLMEPYIWRRR DNTYVLNLGKTWEKL+LAARVIVA+ENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQ+VHEASYVNVPVIAFADSDSPLQ+VDIAIP NNKGRLSIGLLYWLLAREVLRLRGTISR +EWDVPVDLFFYREPDEIEK+E+KPA FA E E+ + AP+APG++DFG  G AGVVP+YGEPVSASWDGA AAPVD       +    +GWTN
Sbjct:    1 MTQIDVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEIAEPAPIAPGIEDFGAGGMAGVVPAYGEPVSASWDGAGAAPVDXXXXXXDQPADTAGWTN 287          
BLAST of NO17G00590 vs. NCBI_GenBank
Match: CBJ28597.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 349.4 bits (895), Expect = 1.100e-92
Identity = 184/288 (63.89%), Postives = 215/288 (74.65%), Query Frame = 0
Query:    1 MTQIDVPKALQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYVLNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFADSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVPVDLFFYREPDEIEKEEDKPAAFATEPEMPDAA-----PVAPGVDDFGVVG-AGVVPSYGEPVSASWDGAAAPVDQAGASSWEQPTESG 283
            M    +P  L   ++D+HK++ A VHIGT+NSD  M+ YIWRRR D  ++LN+GKTWEKLVLAAR+IVAIENP+DV+AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPRLL++TDPR D+Q+V EASYVNVPVIAF DSDSPLQ VD+AIP NNKG+LSIGLLYWLLAREVLR+RGTI RT  WDVPVDLFFYREP+E+EK E+  A F  EP    A+     P+A G     + G A V P+   PV   +   A P   A    W+    +G
Sbjct:    1 MASSSLPACLHAKEEDIHKMLAAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPF-QEPAAAAASGWGADPMAGGAAPTPMEGFAAVDPAAAAPVPVEYQ--APPQAAAMGGGWDAAPATG 285          
BLAST of NO17G00590 vs. NCBI_GenBank
Match: GAX12300.1 (small subunit ribosomal protein SAe [Fistulifera solaris])

HSP 1 Score: 342.8 bits (878), Expect = 1.000e-90
Identity = 179/278 (64.39%), Postives = 211/278 (75.90%), Query Frame = 0
Query:    5 DVPKALQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYVLNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFADSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVPVDLFFYREPDEIEKEEDKPAAFATEPEMPDAAPVAPGVDDFGVVGAGVVPSYGEPVSASWDGAAAPVDQAGASSWEQPTESG 283
            ++P  LQP ++D+  ++ A VH GT+NSD +M  YIWRRRVD  ++LN+G+TWEKL+LAARVIV+IENP DVIAISARPYG RA LKFA YTGAQSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQ+V EASYVN+PVIAF DSDSPLQYVDIAIP NNKG+LSIGLLYWLLAREVLRLRG+ISR E W+VPVDLFF+R+ +E++K E++  A   E         A G   +    A V+       +A  DG  A  D  GAS+WE     G
Sbjct:    6 NLPAVLQPKEEDIQMMLSAGVHTGTRNSDSMMTEYIWRRRVDGVHILNIGQTWEKLMLAARVIVSIENPADVIAISARPYGMRATLKFANYTGAQSIAGRFTPGTFTNQITKQFREPRLLIVTDPRTDSQAVKEASYVNIPVIAFCDSDSPLQYVDIAIPANNKGKLSIGLLYWLLAREVLRLRGSISRAEPWEVPVDLFFHRDVEELKKNEEEQQAKLDE---------AGGTGGYEAAPAEVMDPSQLVDTAGVDGYQA--DAYGASTWEGDQAGG 272          
BLAST of NO17G00590 vs. NCBI_GenBank
Match: GAX21094.1 (small subunit ribosomal protein SAe [Fistulifera solaris])

HSP 1 Score: 340.1 bits (871), Expect = 6.600e-90
Identity = 178/278 (64.03%), Postives = 210/278 (75.54%), Query Frame = 0
Query:    5 DVPKALQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYVLNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFADSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVPVDLFFYREPDEIEKEEDKPAAFATEPEMPDAAPVAPGVDDFGVVGAGVVPSYGEPVSASWDGAAAPVDQAGASSWEQPTESG 283
            ++P  LQP ++D+  ++ A VH GT+NSD +M  YIWRRRVD  ++LN+G+TWEKL+LAARVIV+IENP DVIAISARPYG RA LKFA YTGAQSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQ+V EASYVN+PVIA  DSDSPLQYVDIAIP NNKG+LSIGLLYWLLAREVLRLRG+ISR E W+VPVDLFF+R+ +E++K E++  A   E         A G   +    A V+       +A  DG  A  D  GAS+WE     G
Sbjct:    6 NLPAILQPKEEDIQMMLSAGVHTGTRNSDSMMTEYIWRRRVDGVHILNIGQTWEKLMLAARVIVSIENPADVIAISARPYGMRATLKFANYTGAQSIAGRFTPGTFTNQITKQFREPRLLIVTDPRTDSQAVKEASYVNIPVIALCDSDSPLQYVDIAIPANNKGKLSIGLLYWLLAREVLRLRGSISRAEPWEVPVDLFFHRDVEELKKNEEEQQAKLDE---------AGGTGGYEAAPAEVMDPSQLVDTAGVDGYQA--DAYGASTWEGDQAGG 272          
BLAST of NO17G00590 vs. NCBI_GenBank
Match: EJK48596.1 (hypothetical protein THAOC_32592 [Thalassiosira oceanica])

HSP 1 Score: 339.7 bits (870), Expect = 8.600e-90
Identity = 170/277 (61.37%), Postives = 211/277 (76.17%), Query Frame = 0
Query:    6 VPKALQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYVLNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFADSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVPVDLFFYREPDEIEKEEDKPAAFATEPEMPDAAPVAPGVDDFGVVGAGVVPSYGEPVSASWDGAAAPVDQAGASSWEQPTESG 283
            +P  LQP ++D+  ++ A VH GT+NSD  ME YIWRRR D  +VLN+GKTWEK++LAARVIVAIENP+DV+AISARP+G RAVLKFA YTG+QSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQ+V E+SYVN+PVIAF DSDSPLQ+VDIAIP NNKG+ SIGL+YW+LAREVLRLRG++SR+ +WDVPVDLFF+R+ +E++K E++ AA   + E   A                  P+Y + V A       PV +A A++  +P   G
Sbjct:    8 LPAVLQPKEEDIQMMLSAGVHTGTRNSDSAMEEYIWRRRKDGLHVLNIGKTWEKIMLAARVIVAIENPEDVVAISARPWGMRAVLKFAHYTGSQSIAGRFTPGTFTNQITKQFREPRLLIVTDPRTDSQAVRESSYVNIPVIAFCDSDSPLQHVDIAIPANNKGKHSIGLMYWMLAREVLRLRGSVSRSVDWDVPVDLFFHRDIEELKKTEEEQAAAKLQAEQQPA------------------PAYEQEVPAGDGAFEQPVPEAAAAATSEPAAEG 266          
BLAST of NO17G00590 vs. NCBI_GenBank
Match: XP_009037182.1 (hypothetical protein AURANDRAFT_4875, partial [Aureococcus anophagefferens] >EGB07823.1 hypothetical protein AURANDRAFT_4875, partial [Aureococcus anophagefferens])

HSP 1 Score: 339.3 bits (869), Expect = 1.100e-89
Identity = 161/218 (73.85%), Postives = 192/218 (88.07%), Query Frame = 0
Query:   10 LQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYVLNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFADSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVPVDLFFYREPDEIEKEEDKPAAFATEPE 228
            L P ++D+ K++ A  HIGT+NSD +ME YIWRRR D  +++N+GKTWEKL+LAARV+ AIENP+D+IAISARPYGQRAVLKFAQYTGA SIAGRFTPGTFTNQITKQF+EPR+LV+TDPRTDSQ+V EASYVN+PVIAF DSDSP Q+VD+AIP NNKG+LSIGLLYWLLARE+LR+RGT++R   WDVPVDLFFYR+P+E+EK  D+  AFA E E
Sbjct:    2 LAPKEEDIQKMLSAQCHIGTRNSDHMMEEYIWRRRQDGIHIINVGKTWEKLMLAARVLTAIENPQDIIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFKEPRILVITDPRTDSQAVKEASYVNLPVIAFCDSDSPCQHVDVAIPSNNKGKLSIGLLYWLLAREMLRMRGTVARHAPWDVPVDLFFYRDPEELEK-ADEAQAFAAEQE 218          
BLAST of NO17G00590 vs. NCBI_GenBank
Match: XP_002181180.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC47103.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 337.0 bits (863), Expect = 5.600e-89
Identity = 160/215 (74.42%), Postives = 192/215 (89.30%), Query Frame = 0
Query:    6 VPKALQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYVLNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFADSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVPVDLFFYREPDEIEKEEDKPA 221
            +P+ LQP ++D+  ++ A VH GT+NSD  M+ YIWRRR D  ++LN+GKTWEKLVLAARVIVAIENP+DVIAISARPYG RAVLKFA YTGAQ++AGR+TPGTFTNQITKQF+EPRLL++TDPRTDSQ+V EASYVN+PVIAF DSDSPLQYVD+AIP NNKG+ SIGLLYWLLAREVLRLRG+ISR  EW+VPVDLFF+R+P+E++K E++ A
Sbjct:    7 LPEILQPKEEDIQMMLSAGVHTGTRNSDSNMQEYIWRRRNDGVHILNIGKTWEKLVLAARVIVAIENPEDVIAISARPYGMRAVLKFANYTGAQAVAGRWTPGTFTNQITKQFKEPRLLIITDPRTDSQAVKEASYVNIPVIAFCDSDSPLQYVDVAIPANNKGKYSIGLLYWLLAREVLRLRGSISR-NEWEVPVDLFFHRDPEELKKNEEEQA 220          
BLAST of NO17G00590 vs. NCBI_GenBank
Match: OEU15655.1 (ribosomal protein S2 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 335.1 bits (858), Expect = 2.100e-88
Identity = 174/289 (60.21%), Postives = 206/289 (71.28%), Query Frame = 0
Query:    1 MTQIDVPKALQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYVLNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFADSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVPVDLFFYREPDEIE-------KEEDKPAAFATEPEMPDAAPVAPGVDDF------GVVGAGVVPSYGEPVSASWDGAAAPVDQA-GASSW 276
            M    +P  LQP ++D+  ++ A VH GT+NSD  ME YIWRRR D  ++LN+GKTWEKL+LAARVIVAIENP+DVIAISARPYG RAVLKFAQYTGAQ++AGRFTPGTFTNQITKQFREPRLLV+TDPRTDSQSV E+SYVN+PVIAF DSDSPLQ+VDIAIP NNKG+ SIGL+YWLL+RE+LRLRG++SRT +WDVPVDLFF+R+ +E++                   P   D   VAP  D           G    P+       SW+G  A    A GA  W
Sbjct:    1 MNFASLPAVLQPKEEDIQMMLSAGVHTGTRNSDSAMEEYIWRRRNDGVHILNIGKTWEKLILAARVIVAIENPEDVIAISARPYGMRAVLKFAQYTGAQALAGRFTPGTFTNQITKQFREPRLLVITDPRTDSQSVRESSYVNLPVIAFCDSDSPLQFVDIAIPANNKGKYSIGLMYWLLSREILRLRGSVSRTSDWDVPVDLFFHRDVEELKXXXXXXXXXXXXXXXXXXXPTYDDVMAVAPATDAXXXXXXPAPTGGFEAPAAEGAFGTSWEGGQAGAAAASGAGDW 289          
BLAST of NO17G00590 vs. NCBI_GenBank
Match: XP_002288449.1 (40S ribosomal protein-like protein [Thalassiosira pseudonana CCMP1335] >EED93885.1 40S ribosomal protein-like protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 332.0 bits (850), Expect = 1.800e-87
Identity = 155/208 (74.52%), Postives = 186/208 (89.42%), Query Frame = 0
Query:    6 VPKALQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYVLNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFADSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVPVDLFFYREPDEIE 214
            +P+ L P ++D+  ++ A VH GT+NSD  ME YIWRRR D  ++LN+GKTWEK++LAARVIVAIENP+DV+AISARP+G RAVLKFA YTGAQSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQ+V E+SYVN+PVIAF DSDSPLQ+VDIAIP NNKG+ SIGL+YWLLAREVLRLRG++SRT +WDVPVDLFF+R+ +E++
Sbjct:    7 LPQVLHPKEEDIQMMLSAGVHTGTRNSDSSMEEYIWRRRKDGLHILNIGKTWEKIMLAARVIVAIENPEDVVAISARPWGMRAVLKFAHYTGAQSIAGRFTPGTFTNQITKQFREPRLLIVTDPRTDSQAVRESSYVNIPVIAFCDSDSPLQFVDIAIPANNKGKHSIGLIYWLLAREVLRLRGSVSRTSDWDVPVDLFFHRDIEELK 214          
BLAST of NO17G00590 vs. NCBI_GenBank
Match: OQR94016.1 (40S ribosomal protein SA [Thraustotheca clavata])

HSP 1 Score: 330.5 bits (846), Expect = 5.200e-87
Identity = 159/216 (73.61%), Postives = 185/216 (85.65%), Query Frame = 0
Query:   10 LQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYVLNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFADSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVPVDLFFYREPDEIEKEEDKPAAFATE 226
            L   ++D+ K++ A VHIGT+N+D  M  YIWRRR D  +++N+GKTWEKL+LAA+VIVAIENP DVIAISARPYGQRAVLKFAQYTG  +IAGRFTPGTFTNQITKQFREPRLL++TDPRTD+Q V E++YVNVPVIAF DSDSPL+YVD+AIP NNKG+LSIGLLYWLLAREVLRLRGTISR   WDV VDLFFYR+P+E+EK E+     A E
Sbjct:    2 LTQREEDIQKMLAAMVHIGTRNADAQMGEYIWRRRNDGIHIINVGKTWEKLMLAAKVIVAIENPADVIAISARPYGQRAVLKFAQYTGCNAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQPVRESAYVNVPVIAFCDSDSPLRYVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFFYRDPEELEKAEEAQTGAADE 217          
The following BLAST results are available for this feature:
BLAST of NO17G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21169.15.100e-13585.7140s ribosomal protein s0 [Nannochloropsis gaditana... [more]
CBJ28597.11.100e-9263.89conserved unknown protein [Ectocarpus siliculosus][more]
GAX12300.11.000e-9064.39small subunit ribosomal protein SAe [Fistulifera s... [more]
GAX21094.16.600e-9064.03small subunit ribosomal protein SAe [Fistulifera s... [more]
EJK48596.18.600e-9061.37hypothetical protein THAOC_32592 [Thalassiosira oc... [more]
XP_009037182.11.100e-8973.85hypothetical protein AURANDRAFT_4875, partial [Aur... [more]
XP_002181180.15.600e-8974.42predicted protein, partial [Phaeodactylum tricornu... [more]
OEU15655.12.100e-8860.21ribosomal protein S2 [Fragilariopsis cylindrus CCM... [more]
XP_002288449.11.800e-8774.5240S ribosomal protein-like protein [Thalassiosira ... [more]
OQR94016.15.200e-8773.6140S ribosomal protein SA [Thraustotheca clavata][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL158nonsL158Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR035ncniR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR084ngnoR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004775NSK004775Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G00590.1NO17G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600183gene_7827Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100108g3gene9258Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G00590.1NO17G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G00590 ID=NO17G00590|Name=NO17G00590|organism=Nannochloropsis oceanica|type=gene|length=1747bp
GGTATGGGTACAATCAAAATCCTTGGTAATGTACTACAAGGGAGAGGGCA
ACGATGGGCAAGAAGGTCAACGTGAGGCACAACATATCATCCTTCCCACT
TCCAAACGCTCCACCACCACATATCTCAAGGTCCCGGCGAATGGAAGAAT
GCCCCTTGCTAGTGCAGCATGTCGTCTTGTCACAACCTCCACAATTACGA
TCACCACGTCTAGTGTGAGGCACATGAAAGGTGCTTCTGACTTGAAGTGT
TGTTGGATTGAATGGATGGTGGAGAAAGAGACTGCCCTCATCCATTCCGC
TCATCATCAAGGGTTCGCCCGCCTCCACCCTCACACACACTTCCTCACAC
ATTGTACCCCTAACGCACCGTACAAACACAGCTGCAATCCCCACAACTGC
AACCATGACGCAGATCGATGTGCCCAAGGCCCTTCAGCCTACgtaagtaa
ccctttctgtttattctggcggtctgtcgccatccctccccttctttcat
ccctccttcacaccatatttatgaccatcttgcacatctctttccctcct
ctccgctcctgtcaactgtctcctaccaccctccaacatgcatatgtcga
accccttcccgactccctccctccattccctctcctgcaaaacatcacag
GGACCAGGACATGCACAAGCTGGTGTATGCCTCTGTGCACATCGGCACCA
AGAATTCTGACAAGCTGATGGAGCCGTACATCTGGCGTCGACGTGTGGAC
AACACCTACGTCCTCAACCTTGGCAAGACCTGGGAGAAACTTGTACTGGC
CGCCCGCGTCATCGTAGCTATCGAGAACCCGAAAGACGTCATTGCCATCT
CTGCTCGACCTTACGGCCAGCGCGCTGTGCTCAAATTTGCGCAGTACACA
GGTGCTCAGTCCATTGCTGGGCGATTCACGCCCGGGACCTTCACAAACCA
GATCACGAAGCAATTTCGCGAGCCGCGTCTGTTGGTGGTGACTGACCCCC
GAACCGACTCCCAGTCGGTGCATGAGGCCTCGTATGTGAACGTGCCCGTT
ATTGCCTTTGCCGACTCGGACTCCCCGTTGCAATACGTGGATATCGCCAT
TCCGGGGAACAACAAGGGTCGTCTCTCGATTGGCCTGTTGTACTGGCTTT
TGGCGCGGGAGGTGCTGCGTCTGCGAGGCACCATCAGCAGGACGGAAGAG
TGGGATGTGCCCGTGGATCTGTTTTTCTACCGCGAGCCCGATGAGATCGA
GAAAGAAGAGGACAAGCCCGCAGCCTTCGCCACCGAGCCGGAGATGCCTG
ACGCGGCACCCGTCGCCCCTGGTGTGGATGACTTTGGCGTGGTGGGCGCG
GGTGTCGTGCCTTCCTACGGTGAGCCTGTATCGGCCTCGTGGGATGGGGC
AGCGGCGCCTGTGGATCAGGCCGGGGCATCTTCTTGGGAGCAACCGACAG
AGAGCGGATGGACAAATTGAGGGGGGAGGGAGGAAAGGGTGGCGATTGAG
CCGACATGGCTGGTGGTGCCGCTGCGGTGATGGCTGGTCGAGGTCGAGGG
GGGAAGGAGTGTGGGGAGGAGGGTATGACCTTTGAAAAGGGGACGGAGAA
TAGGATAGAGGAGGGGAAGAGGTGGTGCGTCAAGCGACAGAGAAAAGGCG
GTGAAGTCTGACCCTTGAAATTTCGATCGCATGGTCAAGAAATGGAGAGG
AGGATAATGAAGGGGAAAAAGGAAAAGACAAGAACCCTTTTCGAAAA
back to top

protein sequence of NO17G00590.1

>NO17G00590.1-protein ID=NO17G00590.1-protein|Name=NO17G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MTQIDVPKALQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYV
LNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQS
IAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFA
DSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVP
VDLFFYREPDEIEKEEDKPAAFATEPEMPDAAPVAPGVDDFGVVGAGVVP
SYGEPVSASWDGAAAPVDQAGASSWEQPTESGWTN*
back to top
Synonyms
Publications