NO17G00590.1, NO17G00590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00590.1
Unique NameNO17G00590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1539
Alignment locationchr17:212722..214468 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:212722..214468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00590.1 vs.
Match: EWM21169.1 (40s ribosomal protein s0 [Nannochloropsis gaditana])

HSP 1 Score: 502.7 bits (1293), Expect = 7.700e-139
Identity = 253/288 (87.85%), Postives = 272/288 (94.44%), Query Frame = 0 
Query:    1 MTQIDVPKALQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYVLNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFADSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVPVDLFFYREPDEIEKEEDKPAAFATEPEMPDAAPVAPGVDDFGVVG-AGVVPSYGEPVSASWDGA-AAPVDQAGASSWEQPTE-SGWTN 286
            MTQIDVPKALQPTDQD+HKLV+ASVHIGTKNSDKLMEPYIWRRR DNTYVLNLGKTWEKL+LAARVIVA+ENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQ+VHEASYVNVPVIAFADSDSPLQ+VDIAIP NNKGRLSIGLLYWLLAREVLRLRGTISR +EWDVPVDLFFYREPDEIEK+E+KPA FA E E+ + AP+APG++DFG  G AGVVP+YGEPVSASWDGA AAPVD AGA SW+QP + +GWTN
Sbjct:    1 MTQIDVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEIAEPAPIAPGIEDFGAGGMAGVVPAYGEPVSASWDGAGAAPVDPAGA-SWDQPADTAGWTN 287
The following BLAST results are available for this feature:
BLAST of NO17G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21169.17.700e-13987.8540s ribosomal protein s0 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00590NO17G00590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00590.1NO17G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00590.1.cds1NO17G00590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00590.1.cds2NO17G00590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00590.1 ID=NO17G00590.1|Name=NO17G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1539bp
GGTATGGGTACAATCAAAATCCTTGGTAATGTACTACAAGGGAGAGGGCA
ACGATGGGCAAGAAGGTCAACGTGAGGCACAACATATCATCCTTCCCACT
TCCAAACGCTCCACCACCACATATCTCAAGGTCCCGGCGAATGGAAGAAT
GCCCCTTGCTAGTGCAGCATGTCGTCTTGTCACAACCTCCACAATTACGA
TCACCACGTCTAGTGTGAGGCACATGAAAGGTGCTTCTGACTTGAAGTGT
TGTTGGATTGAATGGATGGTGGAGAAAGAGACTGCCCTCATCCATTCCGC
TCATCATCAAGGGTTCGCCCGCCTCCACCCTCACACACACTTCCTCACAC
ATTGTACCCCTAACGCACCGTACAAACACAGCTGCAATCCCCACAACTGC
AACCATGACGCAGATCGATGTGCCCAAGGCCCTTCAGCCTACGGACCAGG
ACATGCACAAGCTGGTGTATGCCTCTGTGCACATCGGCACCAAGAATTCT
GACAAGCTGATGGAGCCGTACATCTGGCGTCGACGTGTGGACAACACCTA
CGTCCTCAACCTTGGCAAGACCTGGGAGAAACTTGTACTGGCCGCCCGCG
TCATCGTAGCTATCGAGAACCCGAAAGACGTCATTGCCATCTCTGCTCGA
CCTTACGGCCAGCGCGCTGTGCTCAAATTTGCGCAGTACACAGGTGCTCA
GTCCATTGCTGGGCGATTCACGCCCGGGACCTTCACAAACCAGATCACGA
AGCAATTTCGCGAGCCGCGTCTGTTGGTGGTGACTGACCCCCGAACCGAC
TCCCAGTCGGTGCATGAGGCCTCGTATGTGAACGTGCCCGTTATTGCCTT
TGCCGACTCGGACTCCCCGTTGCAATACGTGGATATCGCCATTCCGGGGA
ACAACAAGGGTCGTCTCTCGATTGGCCTGTTGTACTGGCTTTTGGCGCGG
GAGGTGCTGCGTCTGCGAGGCACCATCAGCAGGACGGAAGAGTGGGATGT
GCCCGTGGATCTGTTTTTCTACCGCGAGCCCGATGAGATCGAGAAAGAAG
AGGACAAGCCCGCAGCCTTCGCCACCGAGCCGGAGATGCCTGACGCGGCA
CCCGTCGCCCCTGGTGTGGATGACTTTGGCGTGGTGGGCGCGGGTGTCGT
GCCTTCCTACGGTGAGCCTGTATCGGCCTCGTGGGATGGGGCAGCGGCGC
CTGTGGATCAGGCCGGGGCATCTTCTTGGGAGCAACCGACAGAGAGCGGA
TGGACAAATTGAGGGGGGAGGGAGGAAAGGGTGGCGATTGAGCCGACATG
GCTGGTGGTGCCGCTGCGGTGATGGCTGGTCGAGGTCGAGGGGGGAAGGA
GTGTGGGGAGGAGGGTATGACCTTTGAAAAGGGGACGGAGAATAGGATAG
AGGAGGGGAAGAGGTGGTGCGTCAAGCGACAGAGAAAAGGCGGTGAAGTC
TGACCCTTGAAATTTCGATCGCATGGTCAAGAAATGGAGAGGAGGATAAT
GAAGGGGAAAAAGGAAAAGACAAGAACCCTTTTCGAAAA
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protein sequence of NO17G00590.1

>NO17G00590.1-protein ID=NO17G00590.1-protein|Name=NO17G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MTQIDVPKALQPTDQDMHKLVYASVHIGTKNSDKLMEPYIWRRRVDNTYV
LNLGKTWEKLVLAARVIVAIENPKDVIAISARPYGQRAVLKFAQYTGAQS
IAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVHEASYVNVPVIAFA
DSDSPLQYVDIAIPGNNKGRLSIGLLYWLLAREVLRLRGTISRTEEWDVP
VDLFFYREPDEIEKEEDKPAAFATEPEMPDAAPVAPGVDDFGVVGAGVVP
SYGEPVSASWDGAAAPVDQAGASSWEQPTESGWTN*
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mRNA from alignment at chr17:212722..214468+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00590.1 ID=NO17G00590.1|Name=NO17G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1747bp|location=Sequence derived from alignment at chr17:212722..214468+ (Nannochloropsis oceanica)
GGTATGGGTACAATCAAAATCCTTGGTAATGTACTACAAGGGAGAGGGCA
ACGATGGGCAAGAAGGTCAACGTGAGGCACAACATATCATCCTTCCCACT
TCCAAACGCTCCACCACCACATATCTCAAGGTCCCGGCGAATGGAAGAAT
GCCCCTTGCTAGTGCAGCATGTCGTCTTGTCACAACCTCCACAATTACGA
TCACCACGTCTAGTGTGAGGCACATGAAAGGTGCTTCTGACTTGAAGTGT
TGTTGGATTGAATGGATGGTGGAGAAAGAGACTGCCCTCATCCATTCCGC
TCATCATCAAGGGTTCGCCCGCCTCCACCCTCACACACACTTCCTCACAC
ATTGTACCCCTAACGCACCGTACAAACACAGCTGCAATCCCCACAACTGC
AACCATGACGCAGATCGATGTGCCCAAGGCCCTTCAGCCTACGTAAGTAA
CCCTTTCTGTTTATTCTGGCGGTCTGTCGCCATCCCTCCCCTTCTTTCAT
CCCTCCTTCACACCATATTTATGACCATCTTGCACATCTCTTTCCCTCCT
CTCCGCTCCTGTCAACTGTCTCCTACCACCCTCCAACATGCATATGTCGA
ACCCCTTCCCGACTCCCTCCCTCCATTCCCTCTCCTGCAAAACATCACAG
GGACCAGGACATGCACAAGCTGGTGTATGCCTCTGTGCACATCGGCACCA
AGAATTCTGACAAGCTGATGGAGCCGTACATCTGGCGTCGACGTGTGGAC
AACACCTACGTCCTCAACCTTGGCAAGACCTGGGAGAAACTTGTACTGGC
CGCCCGCGTCATCGTAGCTATCGAGAACCCGAAAGACGTCATTGCCATCT
CTGCTCGACCTTACGGCCAGCGCGCTGTGCTCAAATTTGCGCAGTACACA
GGTGCTCAGTCCATTGCTGGGCGATTCACGCCCGGGACCTTCACAAACCA
GATCACGAAGCAATTTCGCGAGCCGCGTCTGTTGGTGGTGACTGACCCCC
GAACCGACTCCCAGTCGGTGCATGAGGCCTCGTATGTGAACGTGCCCGTT
ATTGCCTTTGCCGACTCGGACTCCCCGTTGCAATACGTGGATATCGCCAT
TCCGGGGAACAACAAGGGTCGTCTCTCGATTGGCCTGTTGTACTGGCTTT
TGGCGCGGGAGGTGCTGCGTCTGCGAGGCACCATCAGCAGGACGGAAGAG
TGGGATGTGCCCGTGGATCTGTTTTTCTACCGCGAGCCCGATGAGATCGA
GAAAGAAGAGGACAAGCCCGCAGCCTTCGCCACCGAGCCGGAGATGCCTG
ACGCGGCACCCGTCGCCCCTGGTGTGGATGACTTTGGCGTGGTGGGCGCG
GGTGTCGTGCCTTCCTACGGTGAGCCTGTATCGGCCTCGTGGGATGGGGC
AGCGGCGCCTGTGGATCAGGCCGGGGCATCTTCTTGGGAGCAACCGACAG
AGAGCGGATGGACAAATTGAGGGGGGAGGGAGGAAAGGGTGGCGATTGAG
CCGACATGGCTGGTGGTGCCGCTGCGGTGATGGCTGGTCGAGGTCGAGGG
GGGAAGGAGTGTGGGGAGGAGGGTATGACCTTTGAAAAGGGGACGGAGAA
TAGGATAGAGGAGGGGAAGAGGTGGTGCGTCAAGCGACAGAGAAAAGGCG
GTGAAGTCTGACCCTTGAAATTTCGATCGCATGGTCAAGAAATGGAGAGG
AGGATAATGAAGGGGAAAAAGGAAAAGACAAGAACCCTTTTCGAAAA
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Coding sequence (CDS) from alignment at chr17:212722..214468+

>NO17G00590.1 ID=NO17G00590.1|Name=NO17G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at chr17:212722..214468+ (Nannochloropsis oceanica)
ATGACGCAGATCGATGTGCCCAAGGCCCTTCAGCCTACGGACCAGGACAT
GCACAAGCTGGTGTATGCCTCTGTGCACATCGGCACCAAGAATTCTGACA
AGCTGATGGAGCCGTACATCTGGCGTCGACGTGTGGACAACACCTACGTC
CTCAACCTTGGCAAGACCTGGGAGAAACTTGTACTGGCCGCCCGCGTCAT
CGTAGCTATCGAGAACCCGAAAGACGTCATTGCCATCTCTGCTCGACCTT
ACGGCCAGCGCGCTGTGCTCAAATTTGCGCAGTACACAGGTGCTCAGTCC
ATTGCTGGGCGATTCACGCCCGGGACCTTCACAAACCAGATCACGAAGCA
ATTTCGCGAGCCGCGTCTGTTGGTGGTGACTGACCCCCGAACCGACTCCC
AGTCGGTGCATGAGGCCTCGTATGTGAACGTGCCCGTTATTGCCTTTGCC
GACTCGGACTCCCCGTTGCAATACGTGGATATCGCCATTCCGGGGAACAA
CAAGGGTCGTCTCTCGATTGGCCTGTTGTACTGGCTTTTGGCGCGGGAGG
TGCTGCGTCTGCGAGGCACCATCAGCAGGACGGAAGAGTGGGATGTGCCC
GTGGATCTGTTTTTCTACCGCGAGCCCGATGAGATCGAGAAAGAAGAGGA
CAAGCCCGCAGCCTTCGCCACCGAGCCGGAGATGCCTGACGCGGCACCCG
TCGCCCCTGGTGTGGATGACTTTGGCGTGGTGGGCGCGGGTGTCGTGCCT
TCCTACGGTGAGCCTGTATCGGCCTCGTGGGATGGGGCAGCGGCGCCTGT
GGATCAGGCCGGGGCATCTTCTTGGGAGCAACCGACAGAGAGCGGATGGA
CAAATTGA
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Synonyms
Publications