NO17G00580, NO17G00580 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G00580 vs. NCBI_GenBank
Match: EWM21156.1 (shikimate kinase [Nannochloropsis gaditana]) HSP 1 Score: 524.2 bits (1349), Expect = 4.600e-145 Identity = 283/355 (79.72%), Postives = 299/355 (84.23%), Query Frame = 0 Query: 112 AIWGLTDLGNSNFGKFGSDKDPHRNIRPQFMDPKAASWKSENGVDFLPELREIQMRIQGVNVYLVGMPGSGKTTLGRMLAEGLNYRWMDLDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQTVVSTGGGIMQRKENFPFLHSGLIVWLDLPPDAIIARLQASGEIAKRPLLKQAPDPVAVLRELYDARKANYALADVRVVLRAEDDGIKCLKRVTHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGTATDINEVPAEEGGENPAIGAIAALNAED---GDKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGSQGVGFGLGLEEYMKG 464 AIWGLTDLGNSNFGKFGS++DPHRNIRPQF+D + A WK G DFLPEL EI+MRIQGVNVYLVGMPGSGKTTLGRMLAEGL YRWMDLDQFIEQKLGK+ATKVFEEDGEE WRKQETLGMGALQTYVQTVVSTGGGIMQRKEN PFLHSGLIVWLDLPP+ I+AR+Q+SGEI KRPLLK A DPV +R LY+ RK NYALADVRVVLR EDD +KCLKRV HRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKG+ TDINEVPAEEGGENP IGAI ALN + G+ K XXXXXXXXXXXXXXXXX AVGSQGVGFGLGLEEYMKG Sbjct: 185 AIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWK--EGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKGEGKKDWGGKADKXXXXXXXXXXXXXXXXXGSSQEGRQESAPETAAVGSQGVGFGLGLEEYMKG 537
BLAST of NO17G00580 vs. NCBI_GenBank
Match: XP_005853848.1 (shikimate kinase, partial [Nannochloropsis gaditana CCMP526] >EKU22512.1 shikimate kinase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 504.6 bits (1298), Expect = 3.700e-139 Identity = 246/291 (84.54%), Postives = 261/291 (89.69%), Query Frame = 0 Query: 112 AIWGLTDLGNSNFGKFGSDKDPHRNIRPQFMDPKAASWKSENGVDFLPELREIQMRIQGVNVYLVGMPGSGKTTLGRMLAEGLNYRWMDLDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQTVVSTGGGIMQRKENFPFLHSGLIVWLDLPPDAIIARLQASGEIAKRPLLKQAPDPVAVLRELYDARKANYALADVRVVLRAEDDGIKCLKRVTHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGTATDINEVPAEEGGENPAIGAIAALNAEDGDK 403 AIWGLTDLGNSNFGKFGS++DPHRNIRPQF+D + A WK G DFLPEL EI+MRIQGVNVYLVGMPGSGKTTLGRMLAEGL YRWMDLDQFIEQKLGK+ATKVFEEDGEE WRKQETLGMGALQTYVQTVVSTGGGIMQRKEN PFLHSGLIVWLDLPP+ I+AR+Q+SGEI KRPLLK A DPV +R LY+ RK NYALADVRVVLR EDD +KCLKRV HRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKG+ TDINEVPAEEGGENP IGAI ALN + K Sbjct: 157 AIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWK--EGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGK 445
BLAST of NO17G00580 vs. NCBI_GenBank
Match: WP_099534454.1 (shikimate kinase [Limnothrix sp. PR1529] >OCQ91523.1 shikimate kinase [Limnothrix sp. P13C2] >PIB06773.1 shikimate kinase [Limnothrix sp. PR1529]) HSP 1 Score: 151.4 bits (381), Expect = 8.000e-33 Identity = 78/177 (44.07%), Postives = 116/177 (65.54%), Query Frame = 0 Query: 159 PELREIQMRIQGVNVYLVGMPGSGKTTLGRMLAEGLNYRWMDLDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQTVVSTGGGIMQRKENFPFLHSGLIVWLDLPPDAIIARLQAS-GEIAKRPLLKQAPDPVAVLRELYDARKANYALADVRVVLRAEDDGIKCLKRV 335 P + + I+G ++YLVG+ GSGK++ GR LA L+YR+ D DQ IEQ G+S ++F +GE +R+ ET + L Y + VV+TGGGI+ ++EN+ +L GL++WLD + I+ RLQ+ EIA+RPLL Q+PDPVA L EL D R A YA AD++V + E + + ++ Sbjct: 8 PNPQHLATLIRGTSLYLVGLMGSGKSSTGRQLAAALDYRFFDTDQLIEQAAGQSIAQIFATEGEAAFRQLETQVLSQLSAYKRLVVATGGGIVTQQENWGYLRHGLVIWLDPTLETIVNRLQSDPAEIAQRPLL-QSPDPVAALAELRDRRSAQYAQADLQVAIGPEQSPAQVVDQI 183
BLAST of NO17G00580 vs. NCBI_GenBank
Match: OKY71982.1 (shikimate kinase [Limnothrix sp. CACIAM 69d]) HSP 1 Score: 151.4 bits (381), Expect = 8.000e-33 Identity = 78/177 (44.07%), Postives = 116/177 (65.54%), Query Frame = 0 Query: 159 PELREIQMRIQGVNVYLVGMPGSGKTTLGRMLAEGLNYRWMDLDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQTVVSTGGGIMQRKENFPFLHSGLIVWLDLPPDAIIARLQAS-GEIAKRPLLKQAPDPVAVLRELYDARKANYALADVRVVLRAEDDGIKCLKRV 335 P + + I+G ++YLVG+ GSGK++ GR LA L+YR+ D DQ IEQ G+S ++F +GE +R+ ET + L Y + VV+TGGGI+ + EN+ +L GL++WLD + I+ RL+A EIA+RPLL Q+PDPVAVL EL D R A YA AD++V + + + + ++ Sbjct: 8 PNPQHLATLIRGTSLYLVGLMGSGKSSTGRQLAAALDYRFFDTDQLIEQAAGQSIAQIFATEGEAAFRQLETQVLAHLSAYKRLVVATGGGIVTQPENWGYLRHGLVIWLDPALETIVGRLRADPAEIAQRPLL-QSPDPVAVLAELRDRRSAQYAQADLQVAIEPKQSPAQVVDQI 183
BLAST of NO17G00580 vs. NCBI_GenBank
Match: CBN78012.1 (Shikimate Kinase [Ectocarpus siliculosus]) HSP 1 Score: 149.4 bits (376), Expect = 3.100e-32 Identity = 84/203 (41.38%), Postives = 121/203 (59.61%), Query Frame = 0 Query: 163 EIQMRIQGVNVYLVGMPGSGKTTLGRMLAEGL-NYRWMDLDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQTVVSTGGGIMQRKENFPFLHSGLIVWLDLPPDAIIARLQAS-GEIAKRPLLKQAPDPVAVLRELYDARKANYALADVRVVLRAEDDGIKCLKRVTHRIIEELDLRPPKAKMWEEKRNKMKNLW 364 E+ R++G NV+ VGM G+GK+T+ R LA+ + Y ++D D IE+ LG S +VF +DGEE +R E+ + + +YV+ V+TGGGI+ +N+ + +G++VWLD+ P I RL E+AKRPLL DP L EL + RK YA ADV V L+ ED V + I+E +D PPK + W+EK N W Sbjct: 22 ELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEGFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLL-AGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 223
BLAST of NO17G00580 vs. NCBI_GenBank
Match: WP_096676432.1 (shikimate kinase [Fischerella sp. NIES-4106]) HSP 1 Score: 149.4 bits (376), Expect = 3.100e-32 Identity = 73/177 (41.24%), Postives = 116/177 (65.54%), Query Frame = 0 Query: 162 REIQMRIQGVNVYLVGMPGSGKTTLGRMLAEGLNYRWMDLDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQTVVSTGGGIMQRKENFPFLHSGLIVWLDLPPDAIIARLQASGEIAKRPLLKQAPDPVAVLRELYDARKANYALADVRVVLRAEDDGIKCLKRVTHRI 339 R++ R+QG+N+YL+GM G+GKTTLGRMLA L Y ++D D +E+ GK+ ++F E+GE +R+ E+ + + + + V++TGGGI+ R++N+ +LH G+I+WLD+P + + RL E RPLL Q DP LR L + R+A Y AD+R+ + AE+ + +KR+ I Sbjct: 3 RQVNERLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDNLLEKAAGKTINQLFAEEGEAAFRQLESQVLAQVCAFTKLVIATGGGIILRRDNWSYLHHGIIIWLDVPVEILYKRL---AEDTTRPLL-QDTDPQGKLRSLLEQRQALYNQADLRITITAEETSEQIIKRIIEAI 175
BLAST of NO17G00580 vs. NCBI_GenBank
Match: WP_033377576.1 (shikimate kinase [Fischerella muscicola]) HSP 1 Score: 148.7 bits (374), Expect = 5.200e-32 Identity = 74/177 (41.81%), Postives = 116/177 (65.54%), Query Frame = 0 Query: 162 REIQMRIQGVNVYLVGMPGSGKTTLGRMLAEGLNYRWMDLDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQTVVSTGGGIMQRKENFPFLHSGLIVWLDLPPDAIIARLQASGEIAKRPLLKQAPDPVAVLRELYDARKANYALADVRVVLRAEDDGIKCLKRVTHRI 339 R++ R+QG+N+YL+GM G+GKTTLGRMLA L Y ++D D +E+ GK+ ++F E+GE +R+ E+ + + + + V++TGGGI+ R++N+ +LH G+I+WLD+P + + RL E RPLL Q DP LR L + R+A Y AD+RV + AE+ + +KR+ I Sbjct: 3 RQVNERLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDDLLEKAAGKTINQLFAEEGETAFRQLESQVLAQVCAFTKLVIATGGGIILRRDNWSYLHHGIIIWLDVPVEILYKRL---AEDTTRPLL-QDTDPQGKLRSLLEQRQALYNQADLRVPVTAEETSEQIIKRIIEAI 175
BLAST of NO17G00580 vs. NCBI_GenBank
Match: WP_008190629.1 (shikimate kinase [Moorea producens] >EGJ28825.1 shikimate kinase [Moorea producens 3L] >OLT66658.1 shikimate kinase [Moorea producens PAL]) HSP 1 Score: 146.4 bits (368), Expect = 2.600e-31 Identity = 78/175 (44.57%), Postives = 115/175 (65.71%), Query Frame = 0 Query: 168 IQGVNVYLVGMPGSGKTTLGRMLAEGLNYRWMDLDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQTVVSTGGGIMQRKENFPFLHSGLIVWLDLPPDAIIARLQASGEIAKRPLLKQAPDPVAVLRELYDARKANYALADVRVVLRAEDDGIKCLKRVTHRIIEEL 343 ++G+NV+L+GM G+GKTT+G +LA L Y + D D IEQ GK+ ++F EDGEET+R+ ET + L Y Q +V+TGGGI+ + +N+ +LH GL+VWLD+P +I RLQ E RPLL Q PDP L+++ D R++ Y LAD+ + ED G + ++ R+I E+ Sbjct: 5 LKGINVFLIGMMGAGKTTVGGLLASELGYGFCDTDALIEQIAGKTINEIFAEDGEETFRQLETQVLSQLSAYQQLIVATGGGIVLKPQNWSYLHYGLVVWLDVPVAMLIERLQ---EDTTRPLL-QKPDPALELQKILDQRRSLYELADLHI---CEDFG-ETPPQIASRVITEI 171
BLAST of NO17G00580 vs. NCBI_GenBank
Match: BAZ68362.1 (shikimate kinase [Fischerella sp. NIES-4106]) HSP 1 Score: 146.0 bits (367), Expect = 3.400e-31 Identity = 72/172 (41.86%), Postives = 113/172 (65.70%), Query Frame = 0 Query: 167 RIQGVNVYLVGMPGSGKTTLGRMLAEGLNYRWMDLDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQTVVSTGGGIMQRKENFPFLHSGLIVWLDLPPDAIIARLQASGEIAKRPLLKQAPDPVAVLRELYDARKANYALADVRVVLRAEDDGIKCLKRVTHRI 339 R+QG+N+YL+GM G+GKTTLGRMLA L Y ++D D +E+ GK+ ++F E+GE +R+ E+ + + + + V++TGGGI+ R++N+ +LH G+I+WLD+P + + RL E RPLL Q DP LR L + R+A Y AD+R+ + AE+ + +KR+ I Sbjct: 4 RLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDNLLEKAAGKTINQLFAEEGEAAFRQLESQVLAQVCAFTKLVIATGGGIILRRDNWSYLHHGIIIWLDVPVEILYKRL---AEDTTRPLL-QDTDPQGKLRSLLEQRQALYNQADLRITITAEETSEQIIKRIIEAI 171
BLAST of NO17G00580 vs. NCBI_GenBank
Match: WP_089091167.1 (shikimate kinase [Nodularia sp. NIES-3585] >GAX35750.1 shikimate kinase [Nodularia sp. NIES-3585]) HSP 1 Score: 145.6 bits (366), Expect = 4.400e-31 Identity = 76/175 (43.43%), Postives = 115/175 (65.71%), Query Frame = 0 Query: 168 IQGVNVYLVGMPGSGKTTLGRMLAEGLNYRWMDLDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQTVVSTGGGIMQRKENFPFLHSGLIVWLDLPPDAIIARLQASGEIAKRPLLKQAPDPVAVLRELYDARKANYALADVRVVLRAEDDGIKCLKRVTHRIIEEL 343 +QGVN+YL+GM G+GKTT+G++LA+ L YR++D D I Q GKS ++F E+GE +R+ E+ + + Y Q V+TGGGI+ R+EN+ +LH GLIVWLD+P + + RL E RPLL+ A DP LR L + R Y+ AD+++ ++AE+ + + +RIIE + Sbjct: 5 LQGVNLYLIGMMGAGKTTVGQLLAKHLGYRFLDTDSVITQSAGKSINQLFAEEGEAAFRQLESDVLAQVCAYTQLTVATGGGIVLRRENWSYLHHGLIVWLDVPVELLFTRL---AEDTTRPLLQDA-DPKGKLRSLLEQRTPLYSQADLKITVKAEETP----EEIANRIIEAI 171 The following BLAST results are available for this feature:
BLAST of NO17G00580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G00580 ID=NO17G00580|Name=NO17G00580|organism=Nannochloropsis oceanica|type=gene|length=1811bpback to top protein sequence of NO17G00580.1 >NO17G00580.1-protein ID=NO17G00580.1-protein|Name=NO17G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bpback to top Synonyms
Publications
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