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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr17 | genome | chr17:210759..212569 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G00580.1 vs.
Match: EWM21156.1 (shikimate kinase [Nannochloropsis gaditana]) HSP 1 Score: 579.3 bits (1492), Expect = 1.200e-161 Identity = 333/493 (67.55%), Postives = 362/493 (73.43%), Query Frame = 0
Query: 7 QHHQPRIIHALSLFLVLLLA---SCTHAFFS-----LSTSPSASFLLPQIVSLRPTTRSPPSSS--------SSSSSFVLFLHRHPPPSQSRLRLSSSSSNANEDENGDEGTRPNTPDENAAIWGLTDLGNSNFGKFGSDKDPHRNIRPQFMDPKAASWKSENGVDFLPELREIQMRIQGVNVYLVGMPGSGKTTLGRMLAEGLNYRWMDLDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQTVVSTGGGIMQRKENFPFLHSGLIVWLDLPPDAIIARLQASGEIAKRPLLKQAPDPVAVLRELYDARKANYALADVRVVLRAEDDGIKCLKRVTHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGTATDINEVPAEEGGENPAIGAIAALNAED---GDKKKDKGGK-----PKKKGFGTAVRKNGGGGGKAASREGGPVVPSAATAAVGSQGVGFGLGLEEYMKGGEEGEKEGGDEE 476
Q H PR I L ++LLL+ S T F LS++PS + LPQ S + P +SS S SSS R P L SSSS +EG NT +E+AAIWGLTDLGNSNFGKFGS++DPHRNIRPQF+D + A WK G DFLPEL EI+MRIQGVNVYLVGMPGSGKTTLGRMLAEGL YRWMDLDQFIEQKLGK+ATKVFEEDGEE WRKQETLGMGALQTYVQTVVSTGGGIMQRKEN PFLHSGLIVWLDLPP+ I+AR+Q+SGEI KRPLLK A DPV +R LY+ RK NYALADVRVVLR EDD +KCLKRV HRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKG+ TDINEVPAEEGGENP IGAI ALN + G+ KKD GGK KKKGFG AVRK G G + +E P TAAVGSQGVGFGLGLEEYMKG E KEG D E
Sbjct: 71 QFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPE-------EEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKE--GADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKGEGKKDWGGKADKRGQKKKGFGGAVRKGGEGSSQEGRQESAP-----ETAAVGSQGVGFGLGLEEYMKGEEGKRKEGEDGE 549
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G00580.1 ID=NO17G00580.1|Name=NO17G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp
ATGGGCCATGCGCCTGCACAACACCACCAACCCCGGATAATACATGCCCT
GTCCCTCTTCCTCGTTCTTCTCCTTGCGTCATGCACGCACGCCTTCTTCT
CCCTCTCTACATCGCCCTCCGCCTCCTTCCTTCTCCCGCAAATAGTCTCC
CTCCGTCCCACCACCCGCAGCCCTCCCTCCTCCTCCTCCTCCTCCTCTTC
CTTTGTCCTCTTCCTGCACCGCCATCCTCCTCCTTCCCAATCACGCCTCC
GTCTCTCCTCCTCCTCCTCGAACGCCAACGAAGATGAAAATGGCGATGAA
GGCACGAGACCCAACACTCCCGATGAAAACGCAGCAATCTGGGGTCTGAC
CGACCTAGGTAACAGCAACTTTGGTAAATTTGGCTCCGACAAAGATCCAC
ATCGCAACATCCGCCCACAGTTCATGGATCCAAAAGCCGCCAGCTGGAAG
AGCGAGAACGGTGTTGACTTCCTCCCCGAGCTCCGCGAGATACAAATGCG
GATCCAAGGCGTTAATGTCTACCTTGTCGGCATGCCTGGCTCCGGTAAGA
CGACCCTCGGCCGCATGCTAGCTGAGGGGCTTAATTATAGATGGATGGAT
CTGGATCAATTCATCGAGCAAAAACTGGGGAAATCGGCCACGAAAGTCTT
TGAGGAAGACGGGGAGGAAACGTGGCGAAAGCAAGAGACGCTGGGCATGG
GCGCCTTACAGACTTATGTCCAAACAGTCGTGAGCACCGGTGGAGGCATC
ATGCAACGCAAGGAAAACTTCCCGTTTCTCCATAGCGGACTCATCGTCTG
GCTTGACCTACCCCCAGACGCGATCATTGCTCGCTTGCAGGCCTCAGGGG
AGATTGCCAAACGTCCCCTGCTTAAACAAGCGCCAGACCCAGTCGCCGTC
CTCCGCGAACTTTATGATGCCCGAAAGGCCAACTACGCCCTTGCCGATGT
CCGGGTTGTCTTACGCGCAGAAGACGATGGCATCAAATGCCTCAAACGGG
TCACACATCGAATCATCGAAGAACTCGACCTGAGGCCGCCCAAGGCGAAA
ATGTGGGAAGAAAAACGGAATAAAATGAAGAACCTTTGGGAGACCATGAA
GGCCAAAGGGACAGCGACGGACATCAATGAGGTGCCGGCGGAGGAAGGGG
GGGAAAATCCGGCGATCGGCGCGATTGCGGCACTGAACGCGGAGGATGGG
GATAAGAAGAAGGATAAGGGAGGGAAGCCGAAGAAGAAGGGCTTTGGAAC
AGCGGTGCGGAAGAATGGAGGGGGAGGAGGGAAGGCAGCAAGTAGGGAGG
GAGGGCCGGTGGTGCCGTCAGCGGCCACAGCAGCAGTAGGGTCACAGGGA
GTAGGTTTTGGGCTGGGGTTGGAGGAGTATATGAAGGGAGGGGAGGAGGG
AGAGAAGGAGGGAGGGGACGAGGAGCAGCAGCAACAACAACAACAACAAC
AACAACAACAACAACAACAAAAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACGACAACAACAACAGCAACA
ACAACAACAACAACAACAACAACAACAACAACAACAATAA back to topprotein sequence of NO17G00580.1 >NO17G00580.1-protein ID=NO17G00580.1-protein|Name=NO17G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MGHAPAQHHQPRIIHALSLFLVLLLASCTHAFFSLSTSPSASFLLPQIVS
LRPTTRSPPSSSSSSSSFVLFLHRHPPPSQSRLRLSSSSSNANEDENGDE
GTRPNTPDENAAIWGLTDLGNSNFGKFGSDKDPHRNIRPQFMDPKAASWK
SENGVDFLPELREIQMRIQGVNVYLVGMPGSGKTTLGRMLAEGLNYRWMD
LDQFIEQKLGKSATKVFEEDGEETWRKQETLGMGALQTYVQTVVSTGGGI
MQRKENFPFLHSGLIVWLDLPPDAIIARLQASGEIAKRPLLKQAPDPVAV
LRELYDARKANYALADVRVVLRAEDDGIKCLKRVTHRIIEELDLRPPKAK
MWEEKRNKMKNLWETMKAKGTATDINEVPAEEGGENPAIGAIAALNAEDG
DKKKDKGGKPKKKGFGTAVRKNGGGGGKAASREGGPVVPSAATAAVGSQG
VGFGLGLEEYMKGGEEGEKEGGDEEQQQQQQQQQQQQQQQKQQQQQQQQQ
QQQQQQQQQQRQQQQQQQQQQQQQQQQQQ* back to topmRNA from alignment at chr17:210759..212569- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G00580.1 ID=NO17G00580.1|Name=NO17G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp|location=Sequence derived from alignment at chr17:210759..212569- (Nannochloropsis oceanica)
ATGGGCCATGCGCCTGCACAACACCACCAACCCCGGATAATACATGCCCT
GTCCCTCTTCCTCGTTCTTCTCCTTGCGTCATGCACGCACGCCTTCTTCT
CCCTCTCTACATCGCCCTCCGCCTCCTTCCTTCTCCCGCAAATAGTCTCC
CTCCGTCCCACCACCCGCAGCCCTCCCTCCTCCTCCTCCTCCTCCTCTTC
CTTTGTCCTCTTCCTGCACCGCCATCCTCCTCCTTCCCAATCACGCCTCC
GTCTCTCCTCCTCCTCCTCGAACGCCAACGAAGATGAAAATGGCGATGAA
GGCACGAGACCCAACACTCCCGATGAAAACGCAGCAATCTGGGGTCTGAC
CGACCTAGGTAACAGCAACTTTGGTAAATTTGGCTCCGACAAAGATCCAC
ATCGCAACATCCGCCCACAGTTCATGGATCCAAAAGCCGCCAGCTGGAAG
AGCGAGAACGGTGTTGACTTCCTCCCCGAGCTCCGCGAGATACAAATGCG
GATCCAAGGCGTTAATGTCTACCTTGTCGGCATGCCTGGCTCCGGTAAGA
CGACCCTCGGCCGCATGCTAGCTGAGGGGCTTAATTATAGATGGATGGAT
CTGGATCAATTCATCGAGCAAAAACTGGGGAAATCGGCCACGAAAGTCTT
TGAGGAAGACGGGGAGGAAACGTGGCGAAAGCAAGAGACGCTGGGCATGG
GCGCCTTACAGACTTATGTCCAAACAGTCGTGAGCACCGGTGGAGGCATC
ATGCAACGCAAGGAAAACTTCCCGTTTCTCCATAGCGGACTCATCGTCTG
GCTTGACCTACCCCCAGACGCGATCATTGCTCGCTTGCAGGCCTCAGGGG
AGATTGCCAAACGTCCCCTGCTTAAACAAGCGCCAGACCCAGTCGCCGTC
CTCCGCGAACTTTATGATGCCCGAAAGGCCAACTACGCCCTTGCCGATGT
CCGGGTTGTCTTACGCGCAGAAGACGATGGCATCAAATGCCTCAAACGGG
TCACACATCGAATCATCGAAGAACTCGACCTGAGGCCGCCCAAGGCGAAA
ATGTGGGAAGAAAAACGGAATAAAATGAAGAACCTTTGGGAGACCATGAA
GGCCAAAGGGACAGCGACGGACATCAATGAGGTGCCGGCGGAGGAAGGGG
GGGAAAATCCGGCGATCGGCGCGATTGCGGCACTGAACGCGGAGGATGGG
GATAAGAAGAAGGATAAGGGAGGGAAGCCGAAGAAGAAGGGCTTTGGAAC
AGCGGTGCGGAAGAATGGAGGGGGAGGAGGGAAGGCAGCAAGTAGGGAGG
GAGGGCCGGTGGTGCCGTCAGCGGCCACAGCAGCAGTAGGGTCACAGGGA
GTAGGTTTTGGGCTGGGGTTGGAGGAGTATATGAAGGGAGGGGAGGAGGG
AGAGAAGGAGGGAGGGGACGAGGAGCAGCAGGTGGCCGATGCCGCATAGA
TTGTGGAAAGTTACGGAGATGCATATACCGAGAGAAATTTCATGCTAGAA
GGAAATAAATCAATAAGCAGTAAGAAGAAGAAGAAGAAGAAGAACAACAA
CAACAACAAAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAAAACAACAAC
AGCAACAACAACAACAACAACAACAACAACAACAACAACAAAAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACGACAACAACAACAGCAACAACAACAACAACAACAACAACAACAACAAC
AACAACAATAA back to topCoding sequence (CDS) from alignment at chr17:210759..212569- >NO17G00580.1 ID=NO17G00580.1|Name=NO17G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=1590bp|location=Sequence derived from alignment at chr17:210759..212569- (Nannochloropsis oceanica)
ATGGGCCATGCGCCTGCACAACACCACCAACCCCGGATAATACATGCCCT
GTCCCTCTTCCTCGTTCTTCTCCTTGCGTCATGCACGCACGCCTTCTTCT
CCCTCTCTACATCGCCCTCCGCCTCCTTCCTTCTCCCGCAAATAGTCTCC
CTCCGTCCCACCACCCGCAGCCCTCCCTCCTCCTCCTCCTCCTCCTCTTC
CTTTGTCCTCTTCCTGCACCGCCATCCTCCTCCTTCCCAATCACGCCTCC
GTCTCTCCTCCTCCTCCTCGAACGCCAACGAAGATGAAAATGGCGATGAA
GGCACGAGACCCAACACTCCCGATGAAAACGCAGCAATCTGGGGTCTGAC
CGACCTAGGTAACAGCAACTTTGGTAAATTTGGCTCCGACAAAGATCCAC
ATCGCAACATCCGCCCACAGTTCATGGATCCAAAAGCCGCCAGCTGGAAG
AGCGAGAACGGTGTTGACTTCCTCCCCGAGCTCCGCGAGATACAAATGCG
GATCCAAGGCGTTAATGTCTACCTTGTCGGCATGCCTGGCTCCGGTAAGA
CGACCCTCGGCCGCATGCTAGCTGAGGGGCTTAATTATAGATGGATGGAT
CTGGATCAATTCATCGAGCAAAAACTGGGGAAATCGGCCACGAAAGTCTT
TGAGGAAGACGGGGAGGAAACGTGGCGAAAGCAAGAGACGCTGGGCATGG
GCGCCTTACAGACTTATGTCCAAACAGTCGTGAGCACCGGTGGAGGCATC
ATGCAACGCAAGGAAAACTTCCCGTTTCTCCATAGCGGACTCATCGTCTG
GCTTGACCTACCCCCAGACGCGATCATTGCTCGCTTGCAGGCCTCAGGGG
AGATTGCCAAACGTCCCCTGCTTAAACAAGCGCCAGACCCAGTCGCCGTC
CTCCGCGAACTTTATGATGCCCGAAAGGCCAACTACGCCCTTGCCGATGT
CCGGGTTGTCTTACGCGCAGAAGACGATGGCATCAAATGCCTCAAACGGG
TCACACATCGAATCATCGAAGAACTCGACCTGAGGCCGCCCAAGGCGAAA
ATGTGGGAAGAAAAACGGAATAAAATGAAGAACCTTTGGGAGACCATGAA
GGCCAAAGGGACAGCGACGGACATCAATGAGGTGCCGGCGGAGGAAGGGG
GGGAAAATCCGGCGATCGGCGCGATTGCGGCACTGAACGCGGAGGATGGG
GATAAGAAGAAGGATAAGGGAGGGAAGCCGAAGAAGAAGGGCTTTGGAAC
AGCGGTGCGGAAGAATGGAGGGGGAGGAGGGAAGGCAGCAAGTAGGGAGG
GAGGGCCGGTGGTGCCGTCAGCGGCCACAGCAGCAGTAGGGTCACAGGGA
GTAGGTTTTGGGCTGGGGTTGGAGGAGTATATGAAGGGAGGGGAGGAGGG
AGAGAAGGAGGGAGGGGACGAGGAGCAGCAGCAACAACAACAACAACAAC
AACAACAACAACAACAACAAAAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACGACAACAACAACAGCAACA
ACAACAACAACAACAACAACAACAACAACAACAACAATAA back to top
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